Project measure / variable:   Rice1   Pkp1

ID, description, units MPD:49243   Pkp1   PKP1, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - PKP1, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means8.00   None 7.18   None
Median of the strain means8.00   None 6.50   None
SD of the strain means± 3.26 ± 2.39
Coefficient of variation (CV)0.407 0.333
Min–max range of strain means3.50   –   15.5   None 3.50   –   12.0   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 7.3636 7.3636 1.296 0.2672
strain 10 288.1364 28.8136 5.0712 0.0007
sex:strain 10 38.1364 3.8136 0.6712 0.7388
Residuals 22 125.0 5.6818


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 8.5 2.12   2   1.5 0.25 7.0, 10.0 0.15
C3H/HeJ m 6.5 2.12   2   1.5 0.326 5.0, 8.0 -0.29
C57BL/6J f 9.5 0.707   2   0.5 0.0744 9.0, 10.0 0.46
C57BL/6J m 8.5 3.54   2   2.5 0.416 6.0, 11.0 0.55
CAST/EiJ f 10.5 0.707   2   0.5 0.0673 10.0, 11.0 0.77
CAST/EiJ m 9.0 1.41   2   1.0 0.157 8.0, 10.0 0.76
DBA/1J f 8.0 1.41   2   1.0 0.177 7.0, 9.0 0.0
DBA/1J m 5.5 0.707   2   0.5 0.129 5.0, 6.0 -0.7
MRL/MpJ f 8.5 0.707   2   0.5 0.0832 8.0, 9.0 0.15
MRL/MpJ m 5.5 3.54   2   2.5 0.643 3.0, 8.0 -0.7
MRL/MpJ Faslpr-Foxq1sa-J/J f 4.5 0.707   2   0.5 0.157 4.0, 5.0 -1.08
MRL/MpJ Faslpr-Foxq1sa-J/J m 5.0 0.0   2   0.0 0.0 5.0, 5.0 -0.91
NOD/ShiLtJ f 5.5 2.12   2   1.5 0.386 4.0, 7.0 -0.77
NOD/ShiLtJ m 8.0 1.41   2   1.0 0.177 7.0, 9.0 0.34
NZW/LacJ f 7.0 0.0   2   0.0 0.0 7.0, 7.0 -0.31
NZW/LacJ m 6.5 0.707   2   0.5 0.109 6.0, 7.0 -0.29
SB/LeJ f 3.5 2.12   2   1.5 0.606 2.0, 5.0 -1.38
SB/LeJ m 3.5 2.12   2   1.5 0.606 2.0, 5.0 -1.54
STOCK a/a Tmem79ma Flgft/J f 15.5 6.36   2   4.5 0.411 11.0, 20.0 2.3
STOCK a/a Tmem79ma Flgft/J m 12.0 2.83   2   2.0 0.236 10.0, 14.0 2.02
WSB/EiJ f 7.0 4.24   2   3.0 0.606 4.0, 10.0 -0.31
WSB/EiJ m 9.0 1.41   2   1.0 0.157 8.0, 10.0 0.76


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 8.5 1.6855 11.9955 5.0045
C3H/HeJ m 6.5 1.6855 9.9955 3.0045
C57BL/6J f 9.5 1.6855 12.9955 6.0045
C57BL/6J m 8.5 1.6855 11.9955 5.0045
CAST/EiJ f 10.5 1.6855 13.9955 7.0045
CAST/EiJ m 9.0 1.6855 12.4955 5.5045
DBA/1J f 8.0 1.6855 11.4955 4.5045
DBA/1J m 5.5 1.6855 8.9955 2.0045
MRL/MpJ f 8.5 1.6855 11.9955 5.0045
MRL/MpJ m 5.5 1.6855 8.9955 2.0045
MRL/MpJ Faslpr-Foxq1sa-J/J f 4.5 1.6855 7.9955 1.0045
MRL/MpJ Faslpr-Foxq1sa-J/J m 5.0 1.6855 8.4955 1.5045
NOD/ShiLtJ f 5.5 1.6855 8.9955 2.0045
NOD/ShiLtJ m 8.0 1.6855 11.4955 4.5045
NZW/LacJ f 7.0 1.6855 10.4955 3.5045
NZW/LacJ m 6.5 1.6855 9.9955 3.0045
SB/LeJ f 3.5 1.6855 6.9955 0.0045
SB/LeJ m 3.5 1.6855 6.9955 0.0045
STOCK a/a Tmem79ma Flgft/J f 15.5 1.6855 18.9955 12.0045
STOCK a/a Tmem79ma Flgft/J m 12.0 1.6855 15.4955 8.5045
WSB/EiJ f 7.0 1.6855 10.4955 3.5045
WSB/EiJ m 9.0 1.6855 12.4955 5.5045


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 7.5 1.1918 9.9717 5.0283
C57BL/6J both 9.0 1.1918 11.4717 6.5283
CAST/EiJ both 9.75 1.1918 12.2217 7.2783
DBA/1J both 6.75 1.1918 9.2217 4.2783
MRL/MpJ both 7.0 1.1918 9.4717 4.5283
MRL/MpJ Faslpr-Foxq1sa-J/J both 4.75 1.1918 7.2217 2.2783
NOD/ShiLtJ both 6.75 1.1918 9.2217 4.2783
NZW/LacJ both 6.75 1.1918 9.2217 4.2783
SB/LeJ both 3.5 1.1918 5.9717 1.0283
STOCK a/a Tmem79ma Flgft/J both 13.75 1.1918 16.2217 11.2783
WSB/EiJ both 8.0 1.1918 10.4717 5.5283




  GWAS USING LINEAR MIXED MODELS