Project measure / variable:   Rice1   Hist1h2bp

ID, description, units MPD:49217   Hist1h2bp   HIST1H2BP, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - HIST1H2BP, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means5.36   None 5.17   None
Median of the strain means5.33   None 5.17   None
SD of the strain means± 0.732 ± 0.375
Coefficient of variation (CV)0.137 0.0726
Min–max range of strain means3.67   –   6.25   None 4.50   –   5.83   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.3946 0.3946 1.0721 0.3117
strain 10 9.7479 0.9748 2.6483 0.0273
sex:strain 10 3.8349 0.3835 1.0419 0.4431
Residuals 22 8.0978 0.3681


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 3.67 0.0   2   0.0 0.0 3.67, 3.67 -2.3
C3H/HeJ m 4.67 0.707   2   0.5 0.152 4.17, 5.17 -1.32
C57BL/6J f 5.25 0.59   2   0.417 0.112 4.83, 5.67 -0.14
C57BL/6J m 5.33 0.235   2   0.167 0.0441 5.17, 5.5 0.44
CAST/EiJ f 4.75 0.117   2   0.083 0.0247 4.67, 4.83 -0.83
CAST/EiJ m 4.5 0.0   2   0.0 0.0 4.5, 4.5 -1.78
DBA/1J f 5.25 1.06   2   0.75 0.202 4.5, 6.0 -0.14
DBA/1J m 5.58 0.354   2   0.25 0.0633 5.33, 5.83 1.11
MRL/MpJ f 4.92 0.589   2   0.416 0.12 4.5, 5.33 -0.6
MRL/MpJ m 5.08 0.589   2   0.417 0.116 4.67, 5.5 -0.23
MRL/MpJ Faslpr-Foxq1sa-J/J f 5.83 0.235   2   0.167 0.0404 5.67, 6.0 0.65
MRL/MpJ Faslpr-Foxq1sa-J/J m 5.17 0.235   2   0.167 0.0456 5.0, 5.33 0.01
NOD/ShiLtJ f 5.33 0.0   2   0.0 0.0 5.33, 5.33 -0.03
NOD/ShiLtJ m 5.08 0.354   2   0.25 0.0696 4.83, 5.33 -0.23
NZW/LacJ f 5.83 0.235   2   0.167 0.0404 5.67, 6.0 0.65
NZW/LacJ m 5.33 0.707   2   0.5 0.133 4.83, 5.83 0.44
SB/LeJ f 6.08 0.354   2   0.25 0.0581 5.83, 6.33 0.99
SB/LeJ m 5.25 0.117   2   0.083 0.0224 5.17, 5.33 0.23
STOCK a/a Tmem79ma Flgft/J f 5.75 0.117   2   0.083 0.0204 5.67, 5.83 0.54
STOCK a/a Tmem79ma Flgft/J m 5.83 0.235   2   0.167 0.0404 5.67, 6.0 1.77
WSB/EiJ f 6.25 2.0   2   1.42 0.321 4.83, 7.67 1.22
WSB/EiJ m 5.0 0.471   2   0.333 0.0942 4.67, 5.33 -0.44


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 3.667 0.429 4.5567 2.7773
C3H/HeJ m 4.667 0.429 5.5567 3.7773
C57BL/6J f 5.25 0.429 6.1397 4.3603
C57BL/6J m 5.3335 0.429 6.2232 4.4438
CAST/EiJ f 4.75 0.429 5.6397 3.8603
CAST/EiJ m 4.5 0.429 5.3897 3.6103
DBA/1J f 5.25 0.429 6.1397 4.3603
DBA/1J m 5.583 0.429 6.4727 4.6933
MRL/MpJ f 4.9165 0.429 5.8062 4.0268
MRL/MpJ m 5.0835 0.429 5.9732 4.1938
MRL/MpJ Faslpr-Foxq1sa-J/J f 5.8335 0.429 6.7232 4.9438
MRL/MpJ Faslpr-Foxq1sa-J/J m 5.1665 0.429 6.0562 4.2768
NOD/ShiLtJ f 5.333 0.429 6.2227 4.4433
NOD/ShiLtJ m 5.083 0.429 5.9727 4.1933
NZW/LacJ f 5.8335 0.429 6.7232 4.9438
NZW/LacJ m 5.333 0.429 6.2227 4.4433
SB/LeJ f 6.083 0.429 6.9727 5.1933
SB/LeJ m 5.25 0.429 6.1397 4.3603
STOCK a/a Tmem79ma Flgft/J f 5.75 0.429 6.6397 4.8603
STOCK a/a Tmem79ma Flgft/J m 5.8335 0.429 6.7232 4.9438
WSB/EiJ f 6.25 0.429 7.1397 5.3603
WSB/EiJ m 5.0 0.429 5.8897 4.1103


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 4.167 0.3033 4.7961 3.5379
C57BL/6J both 5.2917 0.3033 5.9209 4.6626
CAST/EiJ both 4.625 0.3033 5.2541 3.9959
DBA/1J both 5.4165 0.3033 6.0456 4.7874
MRL/MpJ both 5.0 0.3033 5.6291 4.3709
MRL/MpJ Faslpr-Foxq1sa-J/J both 5.5 0.3033 6.1291 4.8709
NOD/ShiLtJ both 5.208 0.3033 5.8371 4.5789
NZW/LacJ both 5.5832 0.3033 6.2124 4.9541
SB/LeJ both 5.6665 0.3033 6.2956 5.0374
STOCK a/a Tmem79ma Flgft/J both 5.7917 0.3033 6.4209 5.1626
WSB/EiJ both 5.625 0.3033 6.2541 4.9959




  GWAS USING LINEAR MIXED MODELS