Project measure / variable:   Rice1   Krtap11_1

ID, description, units MPD:49231   Krtap11_1   KRTAP11-1, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRTAP11-1, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means4.91   None 4.82   None
Median of the strain means5.00   None 5.00   None
SD of the strain means± 2.08 ± 2.22
Coefficient of variation (CV)0.424 0.460
Min–max range of strain means0   –   8.50   None 0   –   8.00   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0909 0.0909 0.0526 0.8207
strain 10 172.1818 17.2182 9.9684 < 0.0001
sex:strain 10 12.9091 1.2909 0.7474 0.6746
Residuals 22 38.0 1.7273


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 4.0 2.83   2   2.0 0.707 2.0, 6.0 -0.44
C3H/HeJ m 3.0 0.0   2   0.0 0.0 3.0, 3.0 -0.82
C57BL/6J f 5.0 2.83   2   2.0 0.566 3.0, 7.0 0.04
C57BL/6J m 4.0 1.41   2   1.0 0.354 3.0, 5.0 -0.37
CAST/EiJ f 0.0 0.0   2   0.0 0.0 -2.36
CAST/EiJ m 0.0 0.0   2   0.0 0.0 -2.17
DBA/1J f 5.5 0.707   2   0.5 0.129 5.0, 6.0 0.28
DBA/1J m 4.0 1.41   2   1.0 0.354 3.0, 5.0 -0.37
MRL/MpJ f 6.0 1.41   2   1.0 0.236 5.0, 7.0 0.52
MRL/MpJ m 7.0 1.41   2   1.0 0.202 6.0, 8.0 0.98
MRL/MpJ Faslpr-Foxq1sa-J/J f 5.5 0.707   2   0.5 0.129 5.0, 6.0 0.28
MRL/MpJ Faslpr-Foxq1sa-J/J m 6.5 0.707   2   0.5 0.109 6.0, 7.0 0.76
NOD/ShiLtJ f 4.5 0.707   2   0.5 0.157 4.0, 5.0 -0.2
NOD/ShiLtJ m 5.0 1.41   2   1.0 0.283 4.0, 6.0 0.08
NZW/LacJ f 4.5 0.707   2   0.5 0.157 4.0, 5.0 -0.2
NZW/LacJ m 6.5 0.707   2   0.5 0.109 6.0, 7.0 0.76
SB/LeJ f 6.5 0.707   2   0.5 0.109 6.0, 7.0 0.76
SB/LeJ m 5.0 1.41   2   1.0 0.283 4.0, 6.0 0.08
STOCK a/a Tmem79ma Flgft/J f 8.5 0.707   2   0.5 0.0832 8.0, 9.0 1.72
STOCK a/a Tmem79ma Flgft/J m 8.0 1.41   2   1.0 0.177 7.0, 9.0 1.44
WSB/EiJ f 4.0 1.41   2   1.0 0.354 3.0, 5.0 -0.44
WSB/EiJ m 4.0 1.41   2   1.0 0.354 3.0, 5.0 -0.37


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 4.0 0.9293 5.9273 2.0727
C3H/HeJ m 3.0 0.9293 4.9273 1.0727
C57BL/6J f 5.0 0.9293 6.9273 3.0727
C57BL/6J m 4.0 0.9293 5.9273 2.0727
CAST/EiJ f 0.0 0.9293 1.9273 -1.9273
CAST/EiJ m 0.0 0.9293 1.9273 -1.9273
DBA/1J f 5.5 0.9293 7.4273 3.5727
DBA/1J m 4.0 0.9293 5.9273 2.0727
MRL/MpJ f 6.0 0.9293 7.9273 4.0727
MRL/MpJ m 7.0 0.9293 8.9273 5.0727
MRL/MpJ Faslpr-Foxq1sa-J/J f 5.5 0.9293 7.4273 3.5727
MRL/MpJ Faslpr-Foxq1sa-J/J m 6.5 0.9293 8.4273 4.5727
NOD/ShiLtJ f 4.5 0.9293 6.4273 2.5727
NOD/ShiLtJ m 5.0 0.9293 6.9273 3.0727
NZW/LacJ f 4.5 0.9293 6.4273 2.5727
NZW/LacJ m 6.5 0.9293 8.4273 4.5727
SB/LeJ f 6.5 0.9293 8.4273 4.5727
SB/LeJ m 5.0 0.9293 6.9273 3.0727
STOCK a/a Tmem79ma Flgft/J f 8.5 0.9293 10.4273 6.5727
STOCK a/a Tmem79ma Flgft/J m 8.0 0.9293 9.9273 6.0727
WSB/EiJ f 4.0 0.9293 5.9273 2.0727
WSB/EiJ m 4.0 0.9293 5.9273 2.0727


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 3.5 0.6571 4.8628 2.1372
C57BL/6J both 4.5 0.6571 5.8628 3.1372
CAST/EiJ both 0.0 0.6571 1.3628 -1.3628
DBA/1J both 4.75 0.6571 6.1128 3.3872
MRL/MpJ both 6.5 0.6571 7.8628 5.1372
MRL/MpJ Faslpr-Foxq1sa-J/J both 6.0 0.6571 7.3628 4.6372
NOD/ShiLtJ both 4.75 0.6571 6.1128 3.3872
NZW/LacJ both 5.5 0.6571 6.8628 4.1372
SB/LeJ both 5.75 0.6571 7.1128 4.3872
STOCK a/a Tmem79ma Flgft/J both 8.25 0.6571 9.6128 6.8872
WSB/EiJ both 4.0 0.6571 5.3628 2.6372




  GWAS USING LINEAR MIXED MODELS