HMDPpheno10: Liver metabolite levels: Nucleotides and peptides in males of 104 strains of the Hybrid Mouse Diversity Panel (HMDP) (2014)

Ghazalpour A, Bennett BJ, Shih D, Che N, Orozco L, Pan C, Hagopian R, He A, Kayne P, Yang WP, Kirchgessner T, Lusis AJ. Genetic regulation of mouse liver metabolite levels. Mol Syst Biol. 2014 May 23;10(5):730. doi: 10.15252/msb.20135004.   PubMed 24860088  


       
HMDPpheno10 downloads
• Download HMDPpheno10 project data set     one row per animal, one column per trait
• Download HMDPpheno10 strain means, SD, N, etc.     one row per strain/sex/measure
Participants Anatole Ghazalpour       University of California, Los Angeles Los Angeles, CA
Brian J Bennett       University of North Carolina Chapel Hill, NC
Luz Orozco       University of California, Los Angeles Los Angeles, CA
Aldons J Lusis       University of California, Los Angeles Los Angeles, CA
With: Shih D, Che N, Pan C, Hagopian R, He A, Kayne P, Yang W-P
ContactAnatole Ghazalpour     aghazalp@ucla.edu     Lab web site
AffiliationHybrid Mouse Diversity Panel Group (HMDP)
Part of a series: • Metabolite survey: Amino acids   see HMDPpheno6
• Metabolite survey: Carbs, cofactors, vitamins, energy, xenobiotics   see HMDPpheno7
• Metabolite survey: Lipids (non-lysolipids)   see HMDPpheno8
• Metabolite survey: Lipids (lysolipids)   see HMDPpheno9
• Metabolite survey: Nucleotides, peptides   (this project) HMDPpheno10
Project type Phenotype strain survey data set
MPD identifiersHMDPpheno10     MPD:505
Data changelog No updates/corrections.       Initial release date: 06/2014.
Formatted citation
Click above to copy-paste the entire citation for this MPD web page.
Summary of procedures that were conducted
• metabolite quantification Liver metabolic profiling. Molecular measures of nucleotides, peptides. 16h fast.
Mice: HMDP w/par   106 strains   ♂   age 16wks   1 cohort

Select table page: First Prev Next Last
Data set MPD ID Procedure / Protocol Drug or Challenge Phenotype Measure Panel No. of Strains Sex Age Sample Size (Avg)
    HMDPpheno10 50501 metabolite quantification (none) methylphosphate (16h fast), relative abundance  methylphosphate HMDP 106 m 16wks N=1
    HMDPpheno10 50502 metabolite quantification (none) xanthine (16h fast), relative abundance  xanthine HMDP 106 m 16wks N=1
    HMDPpheno10 50503 metabolite quantification (none) xanthosine (16h fast), relative abundance  xanthosine HMDP 106 m 16wks N=1
    HMDPpheno10 50504 metabolite quantification (none) 2'-deoxyinosine (16h fast), relative abundance  deoxyinosine HMDP 105 m 16wks N=1
    HMDPpheno10 50505 metabolite quantification (none) hypoxanthine (16h fast), relative abundance  hypoxanthine HMDP 106 m 16wks N=1
    HMDPpheno10 50506 metabolite quantification (none) inosine (16h fast), relative abundance  inosine HMDP 106 m 16wks N=1
    HMDPpheno10 50507 metabolite quantification (none) adenine (16h fast), relative abundance  adenine HMDP 105 m 16wks N=1
    HMDPpheno10 50508 metabolite quantification (none) adenosine (16h fast), relative abundance  adenosine HMDP 106 m 16wks N=1
    HMDPpheno10 50509 metabolite quantification (none) adenosine 2'-monophosphate (2'-AMP) (16h fast), relative abundance  AMP_2 HMDP 106 m 16wks N=1
    HMDPpheno10 50510 metabolite quantification (none) adenosine 3'-monophosphate (3'-AMP) (16h fast), relative abundance  AMP_3 HMDP 106 m 16wks N=1
    HMDPpheno10 50511 metabolite quantification (none) adenosine 5'-monophosphate (AMP) (16h fast), relative abundance  AMP_5 HMDP 106 m 16wks N=1
    HMDPpheno10 50512 metabolite quantification (none) N1-methyladenosine (16h fast), relative abundance  methyladenosine HMDP 106 m 16wks N=1
    HMDPpheno10 50513 metabolite quantification (none) guanosine (16h fast), relative abundance  guanosine HMDP 99 m 16wks N=1
    HMDPpheno10 50514 metabolite quantification (none) allantoin (16h fast), relative abundance  allantoin HMDP 106 m 16wks N=1
    HMDPpheno10 50515 metabolite quantification (none) cytidine 5'-monophosphate (5'-CMP) (16h fast), relative abundance  CMP_5 HMDP 106 m 16wks N=1
    HMDPpheno10 50516 metabolite quantification (none) cytidine (16h fast), relative abundance  cytidine HMDP 106 m 16wks N=1
    HMDPpheno10 50517 metabolite quantification (none) thymine (16h fast), relative abundance  thymine HMDP 106 m 16wks N=1
    HMDPpheno10 50518 metabolite quantification (none) 3-aminoisobutyrate (16h fast), relative abundance  aminoisobutyrate HMDP 106 m 16wks N=1
    HMDPpheno10 50519 metabolite quantification (none) uracil (16h fast), relative abundance  uracil HMDP 106 m 16wks N=1
    HMDPpheno10 50520 metabolite quantification (none) 5-methyluridine (ribothymidine) (16h fast), relative abundance  methyluridine HMDP 100 m 16wks N=1
    HMDPpheno10 50521 metabolite quantification (none) pseudouridine (16h fast), relative abundance  pseudouridine HMDP 106 m 16wks N=1
    HMDPpheno10 50522 metabolite quantification (none) uridine (16h fast), relative abundance  uridine HMDP 106 m 16wks N=1
    HMDPpheno10 50523 metabolite quantification (none) glycylglycine (16h fast), relative abundance  glycylglycine HMDP 102 m 16wks N=1
    HMDPpheno10 50524 metabolite quantification (none) glycylisoleucine (16h fast), relative abundance  glycylisoleucine HMDP 92 m 16wks N=1
    HMDPpheno10 50525 metabolite quantification (none) glycylleucine (16h fast), relative abundance  glycylleucine HMDP 106 m 16wks N=1
    HMDPpheno10 50526 metabolite quantification (none) glycylproline (16h fast), relative abundance  glycylproline HMDP 106 m 16wks N=1
    HMDPpheno10 50527 metabolite quantification (none) glycylvaline (16h fast), relative abundance  glycylvaline HMDP 105 m 16wks N=1
    HMDPpheno10 50528 metabolite quantification (none) gamma-glutamylglutamate (16h fast), relative abundance  GGG HMDP 106 m 16wks N=1
    HMDPpheno10 50529 metabolite quantification (none) gamma-glutamylisoleucine (16h fast), relative abundance  GGI HMDP 95 m 16wks N=1
    HMDPpheno10 50530 metabolite quantification (none) gamma-glutamylleucine (16h fast), relative abundance  GGL HMDP 106 m 16wks N=1
    HMDPpheno10 50531 metabolite quantification (none) gamma-glutamylthreonine (16h fast), relative abundance  GGT HMDP 104 m 16wks N=1
    HMDPpheno10 50532 metabolite quantification (none) gamma-glutamylvaline (16h fast), relative abundance  GGV HMDP 106 m 16wks N=1
    All boxes             To see more rows use the paging control at top.