Project measure / variable:   HMDPpheno10   glycylvaline

ID, description, units MPD:50527   glycylvaline   glycylvaline (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   105 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno10 - glycylvaline (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested105 strains
Mean of the strain means70572   None
Median of the strain means68598   None
SD of the strain means± 28079
Coefficient of variation (CV)0.398
Min–max range of strain means19370   –   193124   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 30771623374.8502 1465315398.8024 3.1883 0.0013
Residuals 34 15625932235.9583 459586242.2341


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 59933.0 0.0   1   0.0 0.0 59933.0, 59933.0 -0.38
A/J m 70207.0 11376.0   2   8044.0 0.162 62163.0, 78251.0 -0.01
AKR/J m 41184.0 0.0   1   0.0 0.0 41184.0, 41184.0 -1.05
AXB10/PgnJ m 61142.0 0.0   1   0.0 0.0 61142.0, 61142.0 -0.34
AXB12/PgnJ m 51314.0 0.0   1   0.0 0.0 51314.0, 51314.0 -0.69
AXB13/PgnJ m 73034.0 0.0   1   0.0 0.0 73034.0, 73034.0 0.09
AXB15/PgnJ m 47573.0 0.0   1   0.0 0.0 47573.0, 47573.0 -0.82
AXB19a/PgnJ m 69360.0 0.0   1   0.0 0.0 69360.0, 69360.0 -0.04
AXB19b/PgnJ m 74998.0 4681.0   2   3310.0 0.0624 71688.0, 78308.0 0.16
AXB19/PgnJ m 60913.0 0.0   1   0.0 0.0 60913.0, 60913.0 -0.34
AXB1/PgnJ m 37881.0 0.0   1   0.0 0.0 37881.0, 37881.0 -1.16
AXB23/PgnJ m 73213.0 0.0   1   0.0 0.0 73213.0, 73213.0 0.09
AXB24/PgnJ m 68598.0 13241.0   2   9363.0 0.193 59234.0, 77961.0 -0.07
AXB2/PgnJ m 30731.0 0.0   1   0.0 0.0 30731.0, 30731.0 -1.42
AXB4/PgnJ m 88444.0 0.0   1   0.0 0.0 88444.0, 88444.0 0.64
AXB5/PgnJ m 49232.0 0.0   1   0.0 0.0 49232.0, 49232.0 -0.76
AXB6/PgnJ m 97926.0 0.0   1   0.0 0.0 97926.0, 97926.0 0.97
AXB8/PgnJ m 116622.0 0.0   1   0.0 0.0 116622.0, 116622.0 1.64
BALB/cJ m 93216.0 28308.0   3 16344.0 0.304 76212.0, 125894.0 0.81
BTBR T+ Itpr3tf/J m 56115.0 0.0   1   0.0 0.0 56115.0, 56115.0 -0.51
BUB/BnJ m 75398.0 0.0   1   0.0 0.0 75398.0, 75398.0 0.17
BXA11/PgnJ m 55435.0 0.0   1   0.0 0.0 55435.0, 55435.0 -0.54
BXA12/PgnJ m 47508.0 0.0   1   0.0 0.0 47508.0, 47508.0 -0.82
BXA13/PgnJ m 68502.0 0.0   1   0.0 0.0 68502.0, 68502.0 -0.07
BXA14/PgnJ m 97647.0 0.0   1   0.0 0.0 97647.0, 97647.0 0.96
BXA16/PgnJ m 58899.0 18403.0   2   13013.0 0.312 45886.0, 71912.0 -0.42
BXA1/PgnJ m 80816.0 0.0   1   0.0 0.0 80816.0, 80816.0 0.36
BXA24/PgnJ m 104499.0 0.0   1   0.0 0.0 104499.0, 104499.0 1.21
BXA25/PgnJ m 28970.0 0.0   1   0.0 0.0 28970.0, 28970.0 -1.48
BXA26/PgnJ m 81045.0 0.0   1   0.0 0.0 81045.0, 81045.0 0.37
BXA2/PgnJ m 105368.0 0.0   1   0.0 0.0 105368.0, 105368.0 1.24
BXA4/PgnJ m 26510.0 0.0   1   0.0 0.0 26510.0, 26510.0 -1.57
BXA7/PgnJ m 131662.0 0.0   1   0.0 0.0 131662.0, 131662.0 2.18
BXA8/PgnJ m 51431.0 0.0   1   0.0 0.0 51431.0, 51431.0 -0.68
BXD11/TyJ m 43913.0 0.0   1   0.0 0.0 43913.0, 43913.0 -0.95
BXD12/TyJ m 85979.0 0.0   1   0.0 0.0 85979.0, 85979.0 0.55
BXD13/TyJ m 38876.0 0.0   1   0.0 0.0 38876.0, 38876.0 -1.13
BXD14/TyJ m 80336.0 0.0   1   0.0 0.0 80336.0, 80336.0 0.35
BXD15/TyJ m 46254.0 0.0   1   0.0 0.0 46254.0, 46254.0 -0.87
BXD18/TyJ m 34399.0 0.0   1   0.0 0.0 34399.0, 34399.0 -1.29
BXD19/TyJ m 46358.0 877.0   2   620.0 0.0189 45738.0, 46979.0 -0.86
BXD1/TyJ m 34007.0 0.0   1   0.0 0.0 34007.0, 34007.0 -1.3
BXD20/TyJ m 71768.0 0.0   1   0.0 0.0 71768.0, 71768.0 0.04
BXD21/TyJ m 53092.0 0.0   1   0.0 0.0 53092.0, 53092.0 -0.62
BXD22/TyJ m 78799.0 0.0   1   0.0 0.0 78799.0, 78799.0 0.29
BXD24/TyJ m 39727.0 0.0   1   0.0 0.0 39727.0, 39727.0 -1.1
BXD24/TyJ-Cep290rd16/J m 28550.0 0.0   1   0.0 0.0 28550.0, 28550.0 -1.5
BXD28/TyJ m 81265.0 15935.0   2   11268.0 0.196 69997.0, 92532.0 0.38
BXD29-Tlr4lps-2J/J m 59304.0 0.0   1   0.0 0.0 59304.0, 59304.0 -0.4
BXD2/TyJ m 67853.0 0.0   1   0.0 0.0 67853.0, 67853.0 -0.1
BXD32/TyJ m 85191.0 0.0   1   0.0 0.0 85191.0, 85191.0 0.52
BXD33/TyJ m 69993.0 0.0   1   0.0 0.0 69993.0, 69993.0 -0.02
BXD34/TyJ m 63482.0 0.0   1   0.0 0.0 63482.0, 63482.0 -0.25
BXD36/TyJ m 51133.0 0.0   1   0.0 0.0 51133.0, 51133.0 -0.69
BXD38/TyJ m 54839.0 0.0   1   0.0 0.0 54839.0, 54839.0 -0.56
BXD39/TyJ m 63630.0 0.0   1   0.0 0.0 63630.0, 63630.0 -0.25
BXD40/TyJ m 73889.0 0.0   1   0.0 0.0 73889.0, 73889.0 0.12
BXD42/TyJ m 62326.0 0.0   1   0.0 0.0 62326.0, 62326.0 -0.29
BXD5/TyJ m 70882.0 0.0   1   0.0 0.0 70882.0, 70882.0 0.01
BXD6/TyJ m 67074.0 0.0   1   0.0 0.0 67074.0, 67074.0 -0.12
BXD8/TyJ m 54917.0 0.0   1   0.0 0.0 54917.0, 54917.0 -0.56
BXD9/TyJ m 64829.0 0.0   1   0.0 0.0 64829.0, 64829.0 -0.2
BXH10/TyJ m 124576.0 0.0   1   0.0 0.0 124576.0, 124576.0 1.92
BXH19/TyJ m 55038.0 0.0   1   0.0 0.0 55038.0, 55038.0 -0.55
BXH20/KccJ m 123554.0 0.0   1   0.0 0.0 123554.0, 123554.0 1.89
BXH22/KccJ m 76184.0 0.0   1   0.0 0.0 76184.0, 76184.0 0.2
BXH2/TyJ m 73907.0 0.0   1   0.0 0.0 73907.0, 73907.0 0.12
BXH4/TyJ m 76664.0 16994.0   2   12017.0 0.222 64647.0, 88681.0 0.22
BXH6/TyJ m 110209.0 0.0   1   0.0 0.0 110209.0, 110209.0 1.41
BXH7/TyJ m 56814.0 0.0   1   0.0 0.0 56814.0, 56814.0 -0.49
BXH8/TyJ m 84537.0 0.0   1   0.0 0.0 84537.0, 84537.0 0.5
BXH9/TyJ m 48996.0 0.0   1   0.0 0.0 48996.0, 48996.0 -0.77
C3H/HeJ m 85290.0 35374.0   2   25013.0 0.415 60278.0, 110303.0 0.52
C57BL/6J m 114920.0 16990.0   5 7598.0 0.148 94217.0, 132851.0 1.58
C57L/J m 39852.0 0.0   1   0.0 0.0 39852.0, 39852.0 -1.09
C58/J m 193124.0 0.0   1   0.0 0.0 193124.0, 193124.0 4.36
CAST/EiJ m 110014.0 0.0   1   0.0 0.0 110014.0, 110014.0 1.4
CBA/J m 75410.0 0.0   1   0.0 0.0 75410.0, 75410.0 0.17
CE/J m 84427.0 0.0   1   0.0 0.0 84427.0, 84427.0 0.49
CXB11/HiAJ m 43796.0 6115.0   2   4324.0 0.14 39472.0, 48120.0 -0.95
CXB12/HiAJ m 104810.0 17588.0   2   12436.0 0.168 92373.0, 117246.0 1.22
CXB13/HiAJ m 110552.0 16423.0   3 9482.0 0.149 94176.0, 127022.0 1.42
CXB1/ByJ m 70440.0 7471.0   3 4313.0 0.106 63514.0, 78357.0 0.0
CXB2/ByJ m 91281.0 12349.0   3 7130.0 0.135 77761.0, 101965.0 0.74
CXB3/ByJ m 75407.0 16733.0   2   11832.0 0.222 63575.0, 87239.0 0.17
CXB4/ByJ m 102252.0 46741.0   2   33051.0 0.457 69202.0, 135303.0 1.13
CXB6/ByJ m 87610.0 31146.0   3 17982.0 0.356 52053.0, 110057.0 0.61
CXB7/ByJ m 94579.0 32254.0   2   22807.0 0.341 71772.0, 117386.0 0.85
CXB8/HiAJ m 145286.0 29129.0   3 16818.0 0.2 119173.0, 176703.0 2.66
CXB9/HiAJ m 100742.0 27791.0   3 16045.0 0.276 72550.0, 128114.0 1.07
DBA/2J m 67220.0 11817.0   4 5909.0 0.176 55229.0, 82383.0 -0.12
FVB/NJ m 30894.0 0.0   1   0.0 0.0 30894.0, 30894.0 -1.41
I/LnJ m 71647.0 0.0   1   0.0 0.0 71647.0, 71647.0 0.04
KK/HlJ m 19370.0 0.0   1   0.0 0.0 19370.0, 19370.0 -1.82
LG/J m 22901.0 0.0   1   0.0 0.0 22901.0, 22901.0 -1.7
LP/J m 47132.0 0.0   1   0.0 0.0 47132.0, 47132.0 -0.83
MA/MyJ m 31868.0 0.0   1   0.0 0.0 31868.0, 31868.0 -1.38
NOD/ShiLtJ m 53342.0 0.0   1   0.0 0.0 53342.0, 53342.0 -0.61
NON/ShiLtJ m 95031.0 0.0   1   0.0 0.0 95031.0, 95031.0 0.87
NZW/LacJ m 60284.0 0.0   1   0.0 0.0 60284.0, 60284.0 -0.37
PL/J m 61683.0 0.0   1   0.0 0.0 61683.0, 61683.0 -0.32
SEA/GnJ m 69072.0 0.0   1   0.0 0.0 69072.0, 69072.0 -0.05
SJL/J m 76612.0 0.0   1   0.0 0.0 76612.0, 76612.0 0.22
SM/J m 67659.0 0.0   1   0.0 0.0 67659.0, 67659.0 -0.1
SWR/J m 67080.0 0.0   1   0.0 0.0 67080.0, 67080.0 -0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 70207.05 15158.9288 101013.6997 39400.4003
AXB19b/PgnJ m 74997.8 15158.9288 105804.4497 44191.1503
AXB24/PgnJ m 68597.55 15158.9288 99404.1997 37790.9003
BALB/cJ m 93215.9 12377.2135 118369.4242 68062.3758
BXA16/PgnJ m 58899.35 15158.9288 89705.9997 28092.7003
BXD19/TyJ m 46358.5 15158.9288 77165.1497 15551.8503
BXD28/TyJ m 81264.55 15158.9288 112071.1997 50457.9003
BXH4/TyJ m 76664.1 15158.9288 107470.7497 45857.4503
C3H/HeJ m 85290.4 15158.9288 116097.0497 54483.7503
C57BL/6J m 114920.5 9587.3484 134404.336 95436.664
CXB11/HiAJ m 43796.4 15158.9288 74603.0497 12989.7503
CXB12/HiAJ m 104809.65 15158.9288 135616.2997 74003.0003
CXB13/HiAJ m 110552.5 12377.2135 135706.0242 85398.9758
CXB1/ByJ m 70440.3667 12377.2135 95593.8908 45286.8425
CXB2/ByJ m 91281.4 12377.2135 116434.9242 66127.8758
CXB3/ByJ m 75406.75 15158.9288 106213.3997 44600.1003
CXB4/ByJ m 102252.5 15158.9288 133059.1497 71445.8503
CXB6/ByJ m 87610.3333 12377.2135 112763.8575 62456.8092
CXB7/ByJ m 94578.55 15158.9288 125385.1997 63771.9003
CXB8/HiAJ m 145285.7 12377.2135 170439.2242 120132.1758
CXB9/HiAJ m 100741.6 12377.2135 125895.1242 75588.0758
DBA/2J m 67220.15 10718.9813 89003.7409 45436.5591




  GWAS USING LINEAR MIXED MODELS