Project measure / variable:   HMDPpheno10   uracil

ID, description, units MPD:50519   uracil   uracil (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno10 - uracil (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means3775954   None
Median of the strain means3461456   None
SD of the strain means± 1376443
Coefficient of variation (CV)0.365
Min–max range of strain means1793328   –   10630074   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 39125936474879.3 1863139832137.11 1.9158 0.0445
Residuals 34 33065555836876.4 972516348143.425


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 2180998.0 0.0   1   0.0 0.0 2180998.0, 2180998.0 -1.16
A/J m 3679922.0 1584956.0   2   1120733.0 0.431 2559189.0, 4800656.0 -0.07
AKR/J m 2684564.0 0.0   1   0.0 0.0 2684564.0, 2684564.0 -0.79
AXB10/PgnJ m 3691295.0 0.0   1   0.0 0.0 3691295.0, 3691295.0 -0.06
AXB12/PgnJ m 2509731.0 0.0   1   0.0 0.0 2509731.0, 2509731.0 -0.92
AXB13/PgnJ m 2172472.0 0.0   1   0.0 0.0 2172472.0, 2172472.0 -1.16
AXB15/PgnJ m 3063918.0 0.0   1   0.0 0.0 3063918.0, 3063918.0 -0.52
AXB19a/PgnJ m 4698050.0 0.0   1   0.0 0.0 4698050.0, 4698050.0 0.67
AXB19b/PgnJ m 5576668.0 737474.0   2   521473.0 0.132 5055195.0, 6098141.0 1.31
AXB19/PgnJ m 5225618.0 0.0   1   0.0 0.0 5225618.0, 5225618.0 1.05
AXB1/PgnJ m 8985167.0 0.0   1   0.0 0.0 8985167.0, 8985167.0 3.78
AXB23/PgnJ m 2636638.0 0.0   1   0.0 0.0 2636638.0, 2636638.0 -0.83
AXB24/PgnJ m 2362927.0 264505.0   2   187034.0 0.112 2175894.0, 2549960.0 -1.03
AXB2/PgnJ m 3057725.0 0.0   1   0.0 0.0 3057725.0, 3057725.0 -0.52
AXB4/PgnJ m 6512687.0 0.0   1   0.0 0.0 6512687.0, 6512687.0 1.99
AXB5/PgnJ m 2802105.0 0.0   1   0.0 0.0 2802105.0, 2802105.0 -0.71
AXB6/PgnJ m 3452397.0 0.0   1   0.0 0.0 3452397.0, 3452397.0 -0.24
AXB8/PgnJ m 2669888.0 0.0   1   0.0 0.0 2669888.0, 2669888.0 -0.8
BALB/cJ m 2543910.0 508127.0   3 293367.0 0.2 2228872.0, 3130098.0 -0.9
BTBR T+ Itpr3tf/J m 2915183.0 0.0   1   0.0 0.0 2915183.0, 2915183.0 -0.63
BUB/BnJ m 3952437.0 0.0   1   0.0 0.0 3952437.0, 3952437.0 0.13
BXA11/PgnJ m 3484607.0 0.0   1   0.0 0.0 3484607.0, 3484607.0 -0.21
BXA12/PgnJ m 2109667.0 0.0   1   0.0 0.0 2109667.0, 2109667.0 -1.21
BXA13/PgnJ m 3598023.0 0.0   1   0.0 0.0 3598023.0, 3598023.0 -0.13
BXA14/PgnJ m 3877334.0 0.0   1   0.0 0.0 3877334.0, 3877334.0 0.07
BXA16/PgnJ m 3038889.0 280734.0   2   198509.0 0.0924 2840380.0, 3237398.0 -0.54
BXA1/PgnJ m 3175343.0 0.0   1   0.0 0.0 3175343.0, 3175343.0 -0.44
BXA24/PgnJ m 4313378.0 0.0   1   0.0 0.0 4313378.0, 4313378.0 0.39
BXA25/PgnJ m 2500465.0 0.0   1   0.0 0.0 2500465.0, 2500465.0 -0.93
BXA26/PgnJ m 2955624.0 0.0   1   0.0 0.0 2955624.0, 2955624.0 -0.6
BXA2/PgnJ m 3367560.0 0.0   1   0.0 0.0 3367560.0, 3367560.0 -0.3
BXA4/PgnJ m 3058149.0 0.0   1   0.0 0.0 3058149.0, 3058149.0 -0.52
BXA7/PgnJ m 3040918.0 0.0   1   0.0 0.0 3040918.0, 3040918.0 -0.53
BXA8/PgnJ m 2535841.0 0.0   1   0.0 0.0 2535841.0, 2535841.0 -0.9
BXD11/TyJ m 2715675.0 0.0   1   0.0 0.0 2715675.0, 2715675.0 -0.77
BXD12/TyJ m 3872790.0 0.0   1   0.0 0.0 3872790.0, 3872790.0 0.07
BXD13/TyJ m 3470516.0 0.0   1   0.0 0.0 3470516.0, 3470516.0 -0.22
BXD14/TyJ m 3267952.0 0.0   1   0.0 0.0 3267952.0, 3267952.0 -0.37
BXD15/TyJ m 2719857.0 0.0   1   0.0 0.0 2719857.0, 2719857.0 -0.77
BXD18/TyJ m 3366205.0 0.0   1   0.0 0.0 3366205.0, 3366205.0 -0.3
BXD19/TyJ m 2964399.0 628138.0   2   444161.0 0.212 2520239.0, 3408560.0 -0.59
BXD1/TyJ m 4417110.0 0.0   1   0.0 0.0 4417110.0, 4417110.0 0.47
BXD20/TyJ m 6808921.0 0.0   1   0.0 0.0 6808921.0, 6808921.0 2.2
BXD21/TyJ m 1793328.0 0.0   1   0.0 0.0 1793328.0, 1793328.0 -1.44
BXD22/TyJ m 3964032.0 0.0   1   0.0 0.0 3964032.0, 3964032.0 0.14
BXD24/TyJ m 3450868.0 0.0   1   0.0 0.0 3450868.0, 3450868.0 -0.24
BXD24/TyJ-Cep290rd16/J m 4350622.0 0.0   1   0.0 0.0 4350622.0, 4350622.0 0.42
BXD28/TyJ m 3336115.0 722321.0   2   510758.0 0.217 2825357.0, 3846874.0 -0.32
BXD29-Tlr4lps-2J/J m 4286560.0 0.0   1   0.0 0.0 4286560.0, 4286560.0 0.37
BXD2/TyJ m 4339138.0 0.0   1   0.0 0.0 4339138.0, 4339138.0 0.41
BXD32/TyJ m 5034172.0 0.0   1   0.0 0.0 5034172.0, 5034172.0 0.91
BXD33/TyJ m 7284590.0 0.0   1   0.0 0.0 7284590.0, 7284590.0 2.55
BXD34/TyJ m 3512440.0 0.0   1   0.0 0.0 3512440.0, 3512440.0 -0.19
BXD36/TyJ m 3266804.0 0.0   1   0.0 0.0 3266804.0, 3266804.0 -0.37
BXD38/TyJ m 4884469.0 0.0   1   0.0 0.0 4884469.0, 4884469.0 0.81
BXD39/TyJ m 3617755.0 0.0   1   0.0 0.0 3617755.0, 3617755.0 -0.11
BXD40/TyJ m 5273036.0 0.0   1   0.0 0.0 5273036.0, 5273036.0 1.09
BXD42/TyJ m 4078643.0 0.0   1   0.0 0.0 4078643.0, 4078643.0 0.22
BXD5/TyJ m 3996042.0 0.0   1   0.0 0.0 3996042.0, 3996042.0 0.16
BXD6/TyJ m 3671758.0 0.0   1   0.0 0.0 3671758.0, 3671758.0 -0.08
BXD8/TyJ m 3423691.0 0.0   1   0.0 0.0 3423691.0, 3423691.0 -0.26
BXD9/TyJ m 3282057.0 0.0   1   0.0 0.0 3282057.0, 3282057.0 -0.36
BXH10/TyJ m 3139274.0 0.0   1   0.0 0.0 3139274.0, 3139274.0 -0.46
BXH19/TyJ m 3533896.0 0.0   1   0.0 0.0 3533896.0, 3533896.0 -0.18
BXH20/KccJ m 3582741.0 0.0   1   0.0 0.0 3582741.0, 3582741.0 -0.14
BXH22/KccJ m 5095873.0 0.0   1   0.0 0.0 5095873.0, 5095873.0 0.96
BXH2/TyJ m 4334853.0 0.0   1   0.0 0.0 4334853.0, 4334853.0 0.41
BXH4/TyJ m 3543457.0 1070333.0   2   756840.0 0.302 2786618.0, 4300296.0 -0.17
BXH6/TyJ m 5015082.0 0.0   1   0.0 0.0 5015082.0, 5015082.0 0.9
BXH7/TyJ m 4456324.0 0.0   1   0.0 0.0 4456324.0, 4456324.0 0.49
BXH8/TyJ m 4455848.0 0.0   1   0.0 0.0 4455848.0, 4455848.0 0.49
BXH9/TyJ m 3913771.0 0.0   1   0.0 0.0 3913771.0, 3913771.0 0.1
C3H/HeJ m 2864125.0 260937.0   2   184510.0 0.0911 2679615.0, 3048635.0 -0.66
C57BL/6J m 4677896.0 128910.0   5 57650.0 0.0276 4522588.0, 4879336.0 0.66
C57L/J m 5510123.0 0.0   1   0.0 0.0 5510123.0, 5510123.0 1.26
C58/J m 10630074.0 0.0   1   0.0 0.0 10630074.0, 10630074.0 4.98
CAST/EiJ m 2081906.0 0.0   1   0.0 0.0 2081906.0, 2081906.0 -1.23
CBA/J m 2293452.0 0.0   1   0.0 0.0 2293452.0, 2293452.0 -1.08
CE/J m 5155348.0 0.0   1   0.0 0.0 5155348.0, 5155348.0 1.0
CXB11/HiAJ m 3498170.0 2058663.0   2   1455694.0 0.588 2042476.0, 4953864.0 -0.2
CXB12/HiAJ m 2698399.0 526754.0   2   372471.0 0.195 2325928.0, 3070870.0 -0.78
CXB13/HiAJ m 4492247.0 2203673.0   3 1272291.0 0.491 3104005.0, 7033192.0 0.52
CXB1/ByJ m 4157460.0 1456414.0   3 840861.0 0.35 2643608.0, 5548683.0 0.28
CXB2/ByJ m 3716522.0 750675.0   3 433402.0 0.202 3145078.0, 4566692.0 -0.04
CXB3/ByJ m 3288292.0 675127.0   2   477387.0 0.205 2810905.0, 3765679.0 -0.35
CXB4/ByJ m 2964165.0 211710.0   2   149702.0 0.0714 2814463.0, 3113867.0 -0.59
CXB6/ByJ m 2387722.0 601153.0   3 347076.0 0.252 1704843.0, 2837058.0 -1.01
CXB7/ByJ m 3148899.0 155677.0   2   110080.0 0.0494 3038818.0, 3258979.0 -0.46
CXB8/HiAJ m 4484775.0 1645739.0   3 950168.0 0.367 3438943.0, 6381784.0 0.51
CXB9/HiAJ m 2742606.0 420056.0   3 242519.0 0.153 2399598.0, 3211106.0 -0.75
DBA/2J m 2904892.0 421628.0   4 210814.0 0.145 2437940.0, 3338188.0 -0.63
FVB/NJ m 2822652.0 0.0   1   0.0 0.0 2822652.0, 2822652.0 -0.69
I/LnJ m 6445086.0 0.0   1   0.0 0.0 6445086.0, 6445086.0 1.94
KK/HlJ m 5982414.0 0.0   1   0.0 0.0 5982414.0, 5982414.0 1.6
LG/J m 3945558.0 0.0   1   0.0 0.0 3945558.0, 3945558.0 0.12
LP/J m 3962528.0 0.0   1   0.0 0.0 3962528.0, 3962528.0 0.14
MA/MyJ m 2731248.0 0.0   1   0.0 0.0 2731248.0, 2731248.0 -0.76
NOD/ShiLtJ m 2782596.0 0.0   1   0.0 0.0 2782596.0, 2782596.0 -0.72
NON/ShiLtJ m 2906235.0 0.0   1   0.0 0.0 2906235.0, 2906235.0 -0.63
NZW/LacJ m 2397561.0 0.0   1   0.0 0.0 2397561.0, 2397561.0 -1.0
PL/J m 3072360.0 0.0   1   0.0 0.0 3072360.0, 3072360.0 -0.51
RIIIS/J m 3070551.0 0.0   1   0.0 0.0 3070551.0, 3070551.0 -0.51
SEA/GnJ m 3162887.0 0.0   1   0.0 0.0 3162887.0, 3162887.0 -0.45
SJL/J m 6056499.0 0.0   1   0.0 0.0 6056499.0, 6056499.0 1.66
SM/J m 3277444.0 0.0   1   0.0 0.0 3277444.0, 3277444.0 -0.36
SWR/J m 3987669.0 0.0   1   0.0 0.0 3987669.0, 3987669.0 0.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 3679922.25 697322.1451 5097051.3506 2262793.1494
AXB19b/PgnJ m 5576668.0 697322.1451 6993797.1006 4159538.8994
AXB24/PgnJ m 2362927.0 697322.1451 3780056.1006 945797.8994
BALB/cJ m 2543910.2667 569361.1473 3700991.3321 1386829.2013
BXA16/PgnJ m 3038889.25 697322.1451 4456018.3506 1621760.1494
BXD19/TyJ m 2964399.4 697322.1451 4381528.5006 1547270.2994
BXD28/TyJ m 3336115.4 697322.1451 4753244.5006 1918986.2994
BXH4/TyJ m 3543457.0 697322.1451 4960586.1006 2126327.8994
C3H/HeJ m 2864124.8 697322.1451 4281253.9006 1446995.6994
C57BL/6J m 4677896.2 441025.2483 5574167.3393 3781625.0607
CXB11/HiAJ m 3498170.15 697322.1451 4915299.2506 2081041.0494
CXB12/HiAJ m 2698398.9 697322.1451 4115528.0006 1281269.7994
CXB13/HiAJ m 4492246.5333 569361.1473 5649327.5987 3335165.4679
CXB1/ByJ m 4157459.9333 569361.1473 5314540.9987 3000378.8679
CXB2/ByJ m 3716521.7667 569361.1473 4873602.8321 2559440.7013
CXB3/ByJ m 3288291.9 697322.1451 4705421.0006 1871162.7994
CXB4/ByJ m 2964164.9 697322.1451 4381294.0006 1547035.7994
CXB6/ByJ m 2387722.2 569361.1473 3544803.2654 1230641.1346
CXB7/ByJ m 3148898.9 697322.1451 4566028.0006 1731769.7994
CXB8/HiAJ m 4484774.6667 569361.1473 5641855.7321 3327693.6013
CXB9/HiAJ m 2742606.1667 569361.1473 3899687.2321 1585525.1013
DBA/2J m 2904891.825 493081.2175 3906953.4219 1902830.2281




  GWAS USING LINEAR MIXED MODELS