Project measure / variable:   HMDPpheno10   glycylisoleucine

ID, description, units MPD:50524   glycylisoleucine   glycylisoleucine (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   92 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno10 - glycylisoleucine (16h fast), relative abundance

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-Tlr4<lps-2J>/JSWR/JBXD19/TyJAXB19a/PgnJFVB/NJBXD12/TyJDBA/2JAXB8/PgnJBXA16/PgnJBXD21/TyJBXD36/TyJRIIIS/JBXD1/TyJBXD8/TyJSJL/JBXA11/PgnJPL/JCXB11/HiAJBTBR T<+> Itpr3<tf>/JBXH19/TyJBXD24/TyJMA/MyJBXD18/TyJBXD13/TyJAXB15/PgnJKK/HlJ (no units) 20,00040,00060,00080,000100,000120,000140,000160,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested92 strains
Mean of the strain means51249   None
Median of the strain means48824   None
SD of the strain means± 23047
Coefficient of variation (CV)0.450
Min–max range of strain means18259   –   155860   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 26153027968.7297 1307651398.4365 2.76 0.0047
Residuals 33 15635169289.2103 473793008.7639


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 92 (92)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 49053.0 0.0   1   0.0 0.0 49053.0, 49053.0 -0.1
A/J m 48601.0 28868.0   2   20413.0 0.594 28188.0, 69013.0 -0.11
AXB10/PgnJ m 42464.0 0.0   1   0.0 0.0 42464.0, 42464.0 -0.38
AXB12/PgnJ m 36526.0 0.0   1   0.0 0.0 36526.0, 36526.0 -0.64
AXB13/PgnJ m 84898.0 0.0   1   0.0 0.0 84898.0, 84898.0 1.46
AXB15/PgnJ m 19426.0 0.0   1   0.0 0.0 19426.0, 19426.0 -1.38
AXB19a/PgnJ m 35643.0 0.0   1   0.0 0.0 35643.0, 35643.0 -0.68
AXB19b/PgnJ m 52696.0 20294.0   2   14350.0 0.385 38346.0, 67046.0 0.06
AXB19/PgnJ m 39499.0 0.0   1   0.0 0.0 39499.0, 39499.0 -0.51
AXB23/PgnJ m 37590.0 0.0   1   0.0 0.0 37590.0, 37590.0 -0.59
AXB24/PgnJ m 50502.0 21147.0   2   14953.0 0.419 35549.0, 65456.0 -0.03
AXB4/PgnJ m 81126.0 0.0   1   0.0 0.0 81126.0, 81126.0 1.3
AXB5/PgnJ m 67403.0 0.0   1   0.0 0.0 67403.0, 67403.0 0.7
AXB6/PgnJ m 67459.0 0.0   1   0.0 0.0 67459.0, 67459.0 0.7
AXB8/PgnJ m 32685.0 0.0   1   0.0 0.0 32685.0, 32685.0 -0.81
BALB/cJ m 53307.0 14154.0   3 8172.0 0.266 43397.0, 69516.0 0.09
BTBR T+ Itpr3tf/J m 24685.0 0.0   1   0.0 0.0 24685.0, 24685.0 -1.15
BXA11/PgnJ m 27877.0 0.0   1   0.0 0.0 27877.0, 27877.0 -1.01
BXA13/PgnJ m 42971.0 0.0   1   0.0 0.0 42971.0, 42971.0 -0.36
BXA14/PgnJ m 60295.0 0.0   1   0.0 0.0 60295.0, 60295.0 0.39
BXA16/PgnJ m 31072.0 16665.0   2   11784.0 0.536 19288.0, 42856.0 -0.88
BXA1/PgnJ m 65307.0 0.0   1   0.0 0.0 65307.0, 65307.0 0.61
BXA24/PgnJ m 71883.0 0.0   1   0.0 0.0 71883.0, 71883.0 0.9
BXA26/PgnJ m 75404.0 0.0   1   0.0 0.0 75404.0, 75404.0 1.05
BXA2/PgnJ m 68870.0 0.0   1   0.0 0.0 68870.0, 68870.0 0.76
BXA7/PgnJ m 86442.0 0.0   1   0.0 0.0 86442.0, 86442.0 1.53
BXA8/PgnJ m 45465.0 0.0   1   0.0 0.0 45465.0, 45465.0 -0.25
BXD11/TyJ m 50999.0 0.0   1   0.0 0.0 50999.0, 50999.0 -0.01
BXD12/TyJ m 33573.0 0.0   1   0.0 0.0 33573.0, 33573.0 -0.77
BXD13/TyJ m 20333.0 0.0   1   0.0 0.0 20333.0, 20333.0 -1.34
BXD14/TyJ m 63930.0 0.0   1   0.0 0.0 63930.0, 63930.0 0.55
BXD15/TyJ m 38106.0 0.0   1   0.0 0.0 38106.0, 38106.0 -0.57
BXD18/TyJ m 22002.0 0.0   1   0.0 0.0 22002.0, 22002.0 -1.27
BXD19/TyJ m 36243.0 0.0   1   0.0 0.0 36243.0, 36243.0 -0.65
BXD1/TyJ m 29660.0 0.0   1   0.0 0.0 29660.0, 29660.0 -0.94
BXD20/TyJ m 44596.0 0.0   1   0.0 0.0 44596.0, 44596.0 -0.29
BXD21/TyJ m 30250.0 0.0   1   0.0 0.0 30250.0, 30250.0 -0.91
BXD22/TyJ m 67421.0 0.0   1   0.0 0.0 67421.0, 67421.0 0.7
BXD24/TyJ m 22524.0 0.0   1   0.0 0.0 22524.0, 22524.0 -1.25
BXD28/TyJ m 71243.0 13615.0   2   9628.0 0.191 61615.0, 80870.0 0.87
BXD29-Tlr4lps-2J/J m 36399.0 0.0   1   0.0 0.0 36399.0, 36399.0 -0.64
BXD2/TyJ m 37761.0 0.0   1   0.0 0.0 37761.0, 37761.0 -0.59
BXD32/TyJ m 38814.0 0.0   1   0.0 0.0 38814.0, 38814.0 -0.54
BXD33/TyJ m 39160.0 0.0   1   0.0 0.0 39160.0, 39160.0 -0.52
BXD34/TyJ m 38884.0 0.0   1   0.0 0.0 38884.0, 38884.0 -0.54
BXD36/TyJ m 30099.0 0.0   1   0.0 0.0 30099.0, 30099.0 -0.92
BXD38/TyJ m 46385.0 0.0   1   0.0 0.0 46385.0, 46385.0 -0.21
BXD39/TyJ m 36670.0 0.0   1   0.0 0.0 36670.0, 36670.0 -0.63
BXD40/TyJ m 36558.0 0.0   1   0.0 0.0 36558.0, 36558.0 -0.64
BXD5/TyJ m 40864.0 0.0   1   0.0 0.0 40864.0, 40864.0 -0.45
BXD6/TyJ m 39202.0 0.0   1   0.0 0.0 39202.0, 39202.0 -0.52
BXD8/TyJ m 28860.0 0.0   1   0.0 0.0 28860.0, 28860.0 -0.97
BXH10/TyJ m 62711.0 0.0   1   0.0 0.0 62711.0, 62711.0 0.5
BXH19/TyJ m 22539.0 0.0   1   0.0 0.0 22539.0, 22539.0 -1.25
BXH20/KccJ m 50026.0 0.0   1   0.0 0.0 50026.0, 50026.0 -0.05
BXH22/KccJ m 49047.0 0.0   1   0.0 0.0 49047.0, 49047.0 -0.1
BXH2/TyJ m 50644.0 0.0   1   0.0 0.0 50644.0, 50644.0 -0.03
BXH4/TyJ m 47067.0 3028.0   2   2141.0 0.0643 44925.0, 49208.0 -0.18
BXH6/TyJ m 54387.0 0.0   1   0.0 0.0 54387.0, 54387.0 0.14
BXH7/TyJ m 50026.0 0.0   1   0.0 0.0 50026.0, 50026.0 -0.05
BXH8/TyJ m 77974.0 0.0   1   0.0 0.0 77974.0, 77974.0 1.16
C3H/HeJ m 58887.0 34306.0   2   24258.0 0.583 34629.0, 83145.0 0.33
C57BL/6J m 79865.0 28606.0   5 12793.0 0.358 45134.0, 124224.0 1.24
C58/J m 155860.0 0.0   1   0.0 0.0 155860.0, 155860.0 4.54
CAST/EiJ m 52077.0 0.0   1   0.0 0.0 52077.0, 52077.0 0.04
CBA/J m 67266.0 0.0   1   0.0 0.0 67266.0, 67266.0 0.69
CE/J m 57060.0 0.0   1   0.0 0.0 57060.0, 57060.0 0.25
CXB11/HiAJ m 27430.0 5597.0   2   3958.0 0.204 23472.0, 31388.0 -1.03
CXB12/HiAJ m 107648.0 24654.0   2   17433.0 0.229 90215.0, 125080.0 2.45
CXB13/HiAJ m 86458.0 33060.0   3 19087.0 0.382 56710.0, 122051.0 1.53
CXB1/ByJ m 67981.0 14805.0   3 8548.0 0.218 51779.0, 80807.0 0.73
CXB2/ByJ m 84359.0 5976.0   3 3450.0 0.0708 77560.0, 88776.0 1.44
CXB3/ByJ m 63469.0 7208.0   2   5097.0 0.114 58373.0, 68566.0 0.53
CXB4/ByJ m 68351.0 20678.0   2   14621.0 0.303 53730.0, 82973.0 0.74
CXB6/ByJ m 60145.0 22070.0   3 12742.0 0.367 34795.0, 75082.0 0.39
CXB7/ByJ m 63118.0 12344.0   2   8728.0 0.196 54389.0, 71846.0 0.51
CXB8/HiAJ m 111973.0 37523.0   3 21664.0 0.335 69958.0, 142146.0 2.63
CXB9/HiAJ m 77651.0 18686.0   3 10788.0 0.241 59101.0, 96470.0 1.15
DBA/2J m 33003.0 7406.0   4 3703.0 0.224 26246.0, 41254.0 -0.79
FVB/NJ m 34431.0 0.0   1   0.0 0.0 34431.0, 34431.0 -0.73
I/LnJ m 50026.0 0.0   1   0.0 0.0 50026.0, 50026.0 -0.05
KK/HlJ m 18259.0 0.0   1   0.0 0.0 18259.0, 18259.0 -1.43
MA/MyJ m 22520.0 0.0   1   0.0 0.0 22520.0, 22520.0 -1.25
NOD/ShiLtJ m 37126.0 0.0   1   0.0 0.0 37126.0, 37126.0 -0.61
NON/ShiLtJ m 81044.0 0.0   1   0.0 0.0 81044.0, 81044.0 1.29
NZW/LacJ m 50258.0 0.0   1   0.0 0.0 50258.0, 50258.0 -0.04
PL/J m 27868.0 0.0   1   0.0 0.0 27868.0, 27868.0 -1.01
RIIIS/J m 29727.0 0.0   1   0.0 0.0 29727.0, 29727.0 -0.93
SEA/GnJ m 77759.0 0.0   1   0.0 0.0 77759.0, 77759.0 1.15
SJL/J m 28333.0 0.0   1   0.0 0.0 28333.0, 28333.0 -0.99
SM/J m 54588.0 0.0   1   0.0 0.0 54588.0, 54588.0 0.14
SWR/J m 36281.0 0.0   1   0.0 0.0 36281.0, 36281.0 -0.65


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 48600.55 15391.4426 79914.6754 17286.4246
AXB19b/PgnJ m 52695.6 15391.4426 84009.7254 21381.4746
AXB24/PgnJ m 50502.45 15391.4426 81816.5754 19188.3246
BALB/cJ m 53306.6667 12567.0602 78874.543 27738.7904
BXA16/PgnJ m 31072.4 15391.4426 62386.5254 0.0
BXD28/TyJ m 71242.9 15391.4426 102557.0254 39928.7746
BXH4/TyJ m 47066.55 15391.4426 78380.6754 15752.4246
C3H/HeJ m 58886.9 15391.4426 90201.0254 27572.7746
C57BL/6J m 79864.56 9734.403 99669.3518 60059.7682
CXB11/HiAJ m 27429.55 15391.4426 58743.6754 0.0
CXB12/HiAJ m 107647.55 15391.4426 138961.6754 76333.4246
CXB13/HiAJ m 86457.9 12567.0602 112025.7763 60890.0237
CXB1/ByJ m 67980.6333 12567.0602 93548.5096 42412.757
CXB2/ByJ m 84358.5667 12567.0602 109926.443 58790.6904
CXB3/ByJ m 63469.35 15391.4426 94783.4754 32155.2246
CXB4/ByJ m 68351.45 15391.4426 99665.5754 37037.3246
CXB6/ByJ m 60145.3333 12567.0602 85713.2096 34577.457
CXB7/ByJ m 63117.5 15391.4426 94431.6254 31803.3746
CXB8/HiAJ m 111973.0333 12567.0602 137540.9096 86405.157
CXB9/HiAJ m 77651.3 12567.0602 103219.1763 52083.4237
DBA/2J m 33003.45 10883.3934 55145.8804 10861.0196




  GWAS USING LINEAR MIXED MODELS

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