Project measure / variable:   HMDPpheno10   deoxyinosine

ID, description, units MPD:50504   deoxyinosine   liver 2'-deoxyinosine (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   105 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno10 - liver 2'-deoxyinosine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested105 strains
Mean of the strain means8496   None
Median of the strain means8064   None
SD of the strain means± 2405
Coefficient of variation (CV)0.283
Min–max range of strain means4105   –   16880   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 366090669.1806 17432889.0086 4.3092 0.0001
Residuals 33 133500712.7147 4045476.1429


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 6128.0 0.0   1   0.0 0.0 6128.0, 6128.0 -0.98
A/J m 9416.0 708.0   2   501.0 0.0752 8915.0, 9916.0 0.38
AKR/J m 8185.0 0.0   1   0.0 0.0 8185.0, 8185.0 -0.13
AXB10/PgnJ m 7902.0 0.0   1   0.0 0.0 7902.0, 7902.0 -0.25
AXB12/PgnJ m 9627.0 0.0   1   0.0 0.0 9627.0, 9627.0 0.47
AXB13/PgnJ m 7778.0 0.0   1   0.0 0.0 7778.0, 7778.0 -0.3
AXB15/PgnJ m 6936.0 0.0   1   0.0 0.0 6936.0, 6936.0 -0.65
AXB19a/PgnJ m 8102.0 0.0   1   0.0 0.0 8102.0, 8102.0 -0.16
AXB19b/PgnJ m 8106.0 77.9   2   55.0 0.0096 8051.0, 8161.0 -0.16
AXB19/PgnJ m 9687.0 0.0   1   0.0 0.0 9687.0, 9687.0 0.5
AXB1/PgnJ m 14680.0 0.0   1   0.0 0.0 14680.0, 14680.0 2.57
AXB23/PgnJ m 8044.0 0.0   1   0.0 0.0 8044.0, 8044.0 -0.19
AXB24/PgnJ m 5412.0 1818.0   2   1285.0 0.336 4126.0, 6697.0 -1.28
AXB2/PgnJ m 7234.0 0.0   1   0.0 0.0 7234.0, 7234.0 -0.52
AXB4/PgnJ m 8548.0 0.0   1   0.0 0.0 8548.0, 8548.0 0.02
AXB5/PgnJ m 5492.0 0.0   1   0.0 0.0 5492.0, 5492.0 -1.25
AXB6/PgnJ m 9156.0 0.0   1   0.0 0.0 9156.0, 9156.0 0.27
AXB8/PgnJ m 5119.0 0.0   1   0.0 0.0 5119.0, 5119.0 -1.4
BALB/cJ m 6590.0 1277.0   3 737.0 0.194 5506.0, 7998.0 -0.79
BTBR T+ Itpr3tf/J m 13717.0 0.0   1   0.0 0.0 13717.0, 13717.0 2.17
BUB/BnJ m 9307.0 0.0   1   0.0 0.0 9307.0, 9307.0 0.34
BXA11/PgnJ m 6498.0 0.0   1   0.0 0.0 6498.0, 6498.0 -0.83
BXA13/PgnJ m 5632.0 0.0   1   0.0 0.0 5632.0, 5632.0 -1.19
BXA14/PgnJ m 6321.0 0.0   1   0.0 0.0 6321.0, 6321.0 -0.9
BXA16/PgnJ m 7875.0 236.0   2   167.0 0.03 7708.0, 8042.0 -0.26
BXA1/PgnJ m 7871.0 0.0   1   0.0 0.0 7871.0, 7871.0 -0.26
BXA24/PgnJ m 8743.0 0.0   1   0.0 0.0 8743.0, 8743.0 0.1
BXA25/PgnJ m 5370.0 0.0   1   0.0 0.0 5370.0, 5370.0 -1.3
BXA26/PgnJ m 6630.0 0.0   1   0.0 0.0 6630.0, 6630.0 -0.78
BXA2/PgnJ m 8737.0 0.0   1   0.0 0.0 8737.0, 8737.0 0.1
BXA4/PgnJ m 7543.0 0.0   1   0.0 0.0 7543.0, 7543.0 -0.4
BXA7/PgnJ m 8290.0 0.0   1   0.0 0.0 8290.0, 8290.0 -0.09
BXA8/PgnJ m 4105.0 0.0   1   0.0 0.0 4105.0, 4105.0 -1.83
BXD11/TyJ m 7769.0 0.0   1   0.0 0.0 7769.0, 7769.0 -0.3
BXD12/TyJ m 10141.0 0.0   1   0.0 0.0 10141.0, 10141.0 0.68
BXD13/TyJ m 11104.0 0.0   1   0.0 0.0 11104.0, 11104.0 1.08
BXD14/TyJ m 5336.0 0.0   1   0.0 0.0 5336.0, 5336.0 -1.31
BXD15/TyJ m 10669.0 0.0   1   0.0 0.0 10669.0, 10669.0 0.9
BXD18/TyJ m 10670.0 0.0   1   0.0 0.0 10670.0, 10670.0 0.9
BXD19/TyJ m 8061.0 39.1   2   27.6 0.00485 8033.0, 8088.0 -0.18
BXD1/TyJ m 6996.0 0.0   1   0.0 0.0 6996.0, 6996.0 -0.62
BXD20/TyJ m 8822.0 0.0   1   0.0 0.0 8822.0, 8822.0 0.14
BXD21/TyJ m 7138.0 0.0   1   0.0 0.0 7138.0, 7138.0 -0.56
BXD22/TyJ m 13271.0 0.0   1   0.0 0.0 13271.0, 13271.0 1.99
BXD24/TyJ m 8086.0 0.0   1   0.0 0.0 8086.0, 8086.0 -0.17
BXD24/TyJ-Cep290rd16/J m 9780.0 0.0   1   0.0 0.0 9780.0, 9780.0 0.53
BXD28/TyJ m 10784.0 1717.0   2   1214.0 0.159 9570.0, 11998.0 0.95
BXD29-Tlr4lps-2J/J m 8053.0 0.0   1   0.0 0.0 8053.0, 8053.0 -0.18
BXD2/TyJ m 10273.0 0.0   1   0.0 0.0 10273.0, 10273.0 0.74
BXD32/TyJ m 9592.0 0.0   1   0.0 0.0 9592.0, 9592.0 0.46
BXD33/TyJ m 10134.0 0.0   1   0.0 0.0 10134.0, 10134.0 0.68
BXD34/TyJ m 8334.0 0.0   1   0.0 0.0 8334.0, 8334.0 -0.07
BXD36/TyJ m 8435.0 0.0   1   0.0 0.0 8435.0, 8435.0 -0.03
BXD38/TyJ m 7927.0 0.0   1   0.0 0.0 7927.0, 7927.0 -0.24
BXD39/TyJ m 5752.0 0.0   1   0.0 0.0 5752.0, 5752.0 -1.14
BXD40/TyJ m 8191.0 0.0   1   0.0 0.0 8191.0, 8191.0 -0.13
BXD42/TyJ m 10216.0 0.0   1   0.0 0.0 10216.0, 10216.0 0.72
BXD5/TyJ m 12885.0 0.0   1   0.0 0.0 12885.0, 12885.0 1.83
BXD6/TyJ m 7790.0 0.0   1   0.0 0.0 7790.0, 7790.0 -0.29
BXD8/TyJ m 6654.0 0.0   1   0.0 0.0 6654.0, 6654.0 -0.77
BXD9/TyJ m 7123.0 0.0   1   0.0 0.0 7123.0, 7123.0 -0.57
BXH10/TyJ m 9002.0 0.0   1   0.0 0.0 9002.0, 9002.0 0.21
BXH19/TyJ m 16880.0 0.0   1   0.0 0.0 16880.0, 16880.0 3.49
BXH20/KccJ m 7418.0 0.0   1   0.0 0.0 7418.0, 7418.0 -0.45
BXH22/KccJ m 9772.0 0.0   1   0.0 0.0 9772.0, 9772.0 0.53
BXH2/TyJ m 7554.0 0.0   1   0.0 0.0 7554.0, 7554.0 -0.39
BXH4/TyJ m 4554.0 633.0   2   448.0 0.139 4106.0, 5002.0 -1.64
BXH6/TyJ m 8796.0 0.0   1   0.0 0.0 8796.0, 8796.0 0.12
BXH7/TyJ m 6655.0 0.0   1   0.0 0.0 6655.0, 6655.0 -0.77
BXH8/TyJ m 8392.0 0.0   1   0.0 0.0 8392.0, 8392.0 -0.04
BXH9/TyJ m 6378.0 0.0   1   0.0 0.0 6378.0, 6378.0 -0.88
C3H/HeJ m 5734.0 1054.0   2   745.0 0.184 4989.0, 6480.0 -1.15
C57BL/6J m 7227.0 2238.0   5 1001.0 0.31 4820.0, 9649.0 -0.53
C57L/J m 10990.0 0.0   1   0.0 0.0 10990.0, 10990.0 1.04
C58/J m 13163.0 0.0   1   0.0 0.0 13163.0, 13163.0 1.94
CAST/EiJ m 5560.0 0.0   1   0.0 0.0 5560.0, 5560.0 -1.22
CBA/J m 7565.0 0.0   1   0.0 0.0 7565.0, 7565.0 -0.39
CE/J m 6080.0 0.0   1   0.0 0.0 6080.0, 6080.0 -1.0
CXB11/HiAJ m 8561.0 2214.0   2   1566.0 0.259 6996.0, 10127.0 0.03
CXB12/HiAJ m 12190.0 2373.0   2   1678.0 0.195 10512.0, 13868.0 1.54
CXB13/HiAJ m 11099.0 844.0   3 487.0 0.076 10360.0, 12018.0 1.08
CXB1/ByJ m 6025.0 1127.0   2   797.0 0.187 5228.0, 6822.0 -1.03
CXB2/ByJ m 9811.0 3491.0   3 2016.0 0.356 5895.0, 12597.0 0.55
CXB3/ByJ m 6828.0 929.0   2   657.0 0.136 6171.0, 7485.0 -0.69
CXB4/ByJ m 7378.0 135.0   2   95.6 0.0183 7282.0, 7473.0 -0.47
CXB6/ByJ m 9202.0 2387.0   3 1378.0 0.259 7725.0, 11955.0 0.29
CXB7/ByJ m 8622.0 2955.0   2   2089.0 0.343 6533.0, 10712.0 0.05
CXB8/HiAJ m 13809.0 1305.0   3 753.0 0.0945 12303.0, 14604.0 2.21
CXB9/HiAJ m 14052.0 4451.0   3 2570.0 0.317 11451.0, 19191.0 2.31
DBA/2J m 6419.0 285.0   4 143.0 0.0445 6001.0, 6624.0 -0.86
FVB/NJ m 7748.0 0.0   1   0.0 0.0 7748.0, 7748.0 -0.31
I/LnJ m 10107.0 0.0   1   0.0 0.0 10107.0, 10107.0 0.67
KK/HlJ m 8064.0 0.0   1   0.0 0.0 8064.0, 8064.0 -0.18
LG/J m 8760.0 0.0   1   0.0 0.0 8760.0, 8760.0 0.11
LP/J m 7401.0 0.0   1   0.0 0.0 7401.0, 7401.0 -0.46
MA/MyJ m 6986.0 0.0   1   0.0 0.0 6986.0, 6986.0 -0.63
NOD/ShiLtJ m 12725.0 0.0   1   0.0 0.0 12725.0, 12725.0 1.76
NON/ShiLtJ m 7470.0 0.0   1   0.0 0.0 7470.0, 7470.0 -0.43
NZW/LacJ m 8136.0 0.0   1   0.0 0.0 8136.0, 8136.0 -0.15
PL/J m 7260.0 0.0   1   0.0 0.0 7260.0, 7260.0 -0.51
RIIIS/J m 8680.0 0.0   1   0.0 0.0 8680.0, 8680.0 0.08
SEA/GnJ m 6594.0 0.0   1   0.0 0.0 6594.0, 6594.0 -0.79
SJL/J m 6957.0 0.0   1   0.0 0.0 6957.0, 6957.0 -0.64
SM/J m 5828.0 0.0   1   0.0 0.0 5828.0, 5828.0 -1.11
SWR/J m 14915.0 0.0   1   0.0 0.0 14915.0, 14915.0 2.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 9415.9 1422.23 12309.4486 6522.3514
AXB19b/PgnJ m 8106.35 1422.23 10999.8986 5212.8014
AXB24/PgnJ m 5411.55 1422.23 8305.0986 2518.0014
BALB/cJ m 6590.2 1161.2459 8952.7726 4227.6274
BXA16/PgnJ m 7875.05 1422.23 10768.5986 4981.5014
BXD19/TyJ m 8060.85 1422.23 10954.3986 5167.3014
BXD28/TyJ m 10783.95 1422.23 13677.4986 7890.4014
BXH4/TyJ m 4553.9 1422.23 7447.4486 1660.3514
C3H/HeJ m 5734.2 1422.23 8627.7486 2840.6514
C57BL/6J m 7227.42 899.4972 9057.4608 5397.3792
CXB11/HiAJ m 8561.4 1422.23 11454.9486 5667.8514
CXB12/HiAJ m 12189.85 1422.23 15083.3986 9296.3014
CXB13/HiAJ m 11098.9 1161.2459 13461.4726 8736.3274
CXB1/ByJ m 6025.05 1422.23 8918.5986 3131.5014
CXB2/ByJ m 9810.9667 1161.2459 12173.5392 7448.3941
CXB3/ByJ m 6827.85 1422.23 9721.3986 3934.3014
CXB4/ByJ m 7377.5 1422.23 10271.0486 4483.9514
CXB6/ByJ m 9201.7667 1161.2459 11564.3392 6839.1941
CXB7/ByJ m 8622.5 1422.23 11516.0486 5728.9514
CXB8/HiAJ m 13808.6333 1161.2459 16171.2059 11446.0608
CXB9/HiAJ m 14051.8333 1161.2459 16414.4059 11689.2608
DBA/2J m 6419.2 1005.6685 8465.2479 4373.1521




  GWAS USING LINEAR MIXED MODELS