Project measure / variable:   HMDPpheno10   xanthosine

ID, description, units MPD:50503   xanthosine   liver xanthosine (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno10 - liver xanthosine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means472567   None
Median of the strain means460522   None
SD of the strain means± 174981
Coefficient of variation (CV)0.370
Min–max range of strain means182570   –   1051142   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 2103701296966.36 100176252236.493 5.0627 < 0.0001
Residuals 34 672766298012.899 19787244059.2029


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 473776.0 0.0   1   0.0 0.0 473776.0, 473776.0 0.01
A/J m 535508.0 93609.0   2   66192.0 0.175 469317.0, 601700.0 0.36
AKR/J m 485521.0 0.0   1   0.0 0.0 485521.0, 485521.0 0.07
AXB10/PgnJ m 633473.0 0.0   1   0.0 0.0 633473.0, 633473.0 0.92
AXB12/PgnJ m 327443.0 0.0   1   0.0 0.0 327443.0, 327443.0 -0.83
AXB13/PgnJ m 682960.0 0.0   1   0.0 0.0 682960.0, 682960.0 1.2
AXB15/PgnJ m 555065.0 0.0   1   0.0 0.0 555065.0, 555065.0 0.47
AXB19a/PgnJ m 671152.0 0.0   1   0.0 0.0 671152.0, 671152.0 1.13
AXB19b/PgnJ m 347880.0 65706.0   2   46461.0 0.189 301419.0, 394341.0 -0.71
AXB19/PgnJ m 468058.0 0.0   1   0.0 0.0 468058.0, 468058.0 -0.03
AXB1/PgnJ m 234828.0 0.0   1   0.0 0.0 234828.0, 234828.0 -1.36
AXB23/PgnJ m 458241.0 0.0   1   0.0 0.0 458241.0, 458241.0 -0.08
AXB24/PgnJ m 611791.0 138861.0   2   98190.0 0.227 513601.0, 709980.0 0.8
AXB2/PgnJ m 471944.0 0.0   1   0.0 0.0 471944.0, 471944.0 0.0
AXB4/PgnJ m 413592.0 0.0   1   0.0 0.0 413592.0, 413592.0 -0.34
AXB5/PgnJ m 511573.0 0.0   1   0.0 0.0 511573.0, 511573.0 0.22
AXB6/PgnJ m 582999.0 0.0   1   0.0 0.0 582999.0, 582999.0 0.63
AXB8/PgnJ m 802400.0 0.0   1   0.0 0.0 802400.0, 802400.0 1.88
BALB/cJ m 329555.0 126422.0   3 72990.0 0.384 231127.0, 472131.0 -0.82
BTBR T+ Itpr3tf/J m 294686.0 0.0   1   0.0 0.0 294686.0, 294686.0 -1.02
BUB/BnJ m 462045.0 0.0   1   0.0 0.0 462045.0, 462045.0 -0.06
BXA11/PgnJ m 577771.0 0.0   1   0.0 0.0 577771.0, 577771.0 0.6
BXA12/PgnJ m 598302.0 0.0   1   0.0 0.0 598302.0, 598302.0 0.72
BXA13/PgnJ m 510846.0 0.0   1   0.0 0.0 510846.0, 510846.0 0.22
BXA14/PgnJ m 1051142.0 0.0   1   0.0 0.0 1051142.0, 1051142.0 3.31
BXA16/PgnJ m 603936.0 281417.0   2   198992.0 0.466 404944.0, 802928.0 0.75
BXA1/PgnJ m 606484.0 0.0   1   0.0 0.0 606484.0, 606484.0 0.77
BXA24/PgnJ m 667510.0 0.0   1   0.0 0.0 667510.0, 667510.0 1.11
BXA25/PgnJ m 418092.0 0.0   1   0.0 0.0 418092.0, 418092.0 -0.31
BXA26/PgnJ m 581614.0 0.0   1   0.0 0.0 581614.0, 581614.0 0.62
BXA2/PgnJ m 550798.0 0.0   1   0.0 0.0 550798.0, 550798.0 0.45
BXA4/PgnJ m 478314.0 0.0   1   0.0 0.0 478314.0, 478314.0 0.03
BXA7/PgnJ m 503933.0 0.0   1   0.0 0.0 503933.0, 503933.0 0.18
BXA8/PgnJ m 818489.0 0.0   1   0.0 0.0 818489.0, 818489.0 1.98
BXD11/TyJ m 331523.0 0.0   1   0.0 0.0 331523.0, 331523.0 -0.81
BXD12/TyJ m 297681.0 0.0   1   0.0 0.0 297681.0, 297681.0 -1.0
BXD13/TyJ m 449605.0 0.0   1   0.0 0.0 449605.0, 449605.0 -0.13
BXD14/TyJ m 388906.0 0.0   1   0.0 0.0 388906.0, 388906.0 -0.48
BXD15/TyJ m 245886.0 0.0   1   0.0 0.0 245886.0, 245886.0 -1.3
BXD18/TyJ m 336143.0 0.0   1   0.0 0.0 336143.0, 336143.0 -0.78
BXD19/TyJ m 398322.0 83645.0   2   59146.0 0.21 339176.0, 457468.0 -0.42
BXD1/TyJ m 343461.0 0.0   1   0.0 0.0 343461.0, 343461.0 -0.74
BXD20/TyJ m 251864.0 0.0   1   0.0 0.0 251864.0, 251864.0 -1.26
BXD21/TyJ m 347596.0 0.0   1   0.0 0.0 347596.0, 347596.0 -0.71
BXD22/TyJ m 387586.0 0.0   1   0.0 0.0 387586.0, 387586.0 -0.49
BXD24/TyJ m 383635.0 0.0   1   0.0 0.0 383635.0, 383635.0 -0.51
BXD24/TyJ-Cep290rd16/J m 263936.0 0.0   1   0.0 0.0 263936.0, 263936.0 -1.19
BXD28/TyJ m 470446.0 30727.0   2   21727.0 0.0653 448719.0, 492173.0 -0.01
BXD29-Tlr4lps-2J/J m 230285.0 0.0   1   0.0 0.0 230285.0, 230285.0 -1.38
BXD2/TyJ m 373365.0 0.0   1   0.0 0.0 373365.0, 373365.0 -0.57
BXD32/TyJ m 468246.0 0.0   1   0.0 0.0 468246.0, 468246.0 -0.02
BXD33/TyJ m 429890.0 0.0   1   0.0 0.0 429890.0, 429890.0 -0.24
BXD34/TyJ m 270255.0 0.0   1   0.0 0.0 270255.0, 270255.0 -1.16
BXD36/TyJ m 182570.0 0.0   1   0.0 0.0 182570.0, 182570.0 -1.66
BXD38/TyJ m 507769.0 0.0   1   0.0 0.0 507769.0, 507769.0 0.2
BXD39/TyJ m 455641.0 0.0   1   0.0 0.0 455641.0, 455641.0 -0.1
BXD40/TyJ m 302922.0 0.0   1   0.0 0.0 302922.0, 302922.0 -0.97
BXD42/TyJ m 291689.0 0.0   1   0.0 0.0 291689.0, 291689.0 -1.03
BXD5/TyJ m 458749.0 0.0   1   0.0 0.0 458749.0, 458749.0 -0.08
BXD6/TyJ m 436042.0 0.0   1   0.0 0.0 436042.0, 436042.0 -0.21
BXD8/TyJ m 294900.0 0.0   1   0.0 0.0 294900.0, 294900.0 -1.02
BXD9/TyJ m 464226.0 0.0   1   0.0 0.0 464226.0, 464226.0 -0.05
BXH10/TyJ m 454635.0 0.0   1   0.0 0.0 454635.0, 454635.0 -0.1
BXH19/TyJ m 575695.0 0.0   1   0.0 0.0 575695.0, 575695.0 0.59
BXH20/KccJ m 489112.0 0.0   1   0.0 0.0 489112.0, 489112.0 0.09
BXH22/KccJ m 555285.0 0.0   1   0.0 0.0 555285.0, 555285.0 0.47
BXH2/TyJ m 549288.0 0.0   1   0.0 0.0 549288.0, 549288.0 0.44
BXH4/TyJ m 687554.0 291842.0   2   206364.0 0.424 481190.0, 893918.0 1.23
BXH6/TyJ m 399954.0 0.0   1   0.0 0.0 399954.0, 399954.0 -0.41
BXH7/TyJ m 297067.0 0.0   1   0.0 0.0 297067.0, 297067.0 -1.0
BXH8/TyJ m 734514.0 0.0   1   0.0 0.0 734514.0, 734514.0 1.5
BXH9/TyJ m 305501.0 0.0   1   0.0 0.0 305501.0, 305501.0 -0.95
C3H/HeJ m 402251.0 13065.0   2   9239.0 0.0325 393013.0, 411490.0 -0.4
C57BL/6J m 550784.0 136685.0   5 61128.0 0.248 363245.0, 698054.0 0.45
C57L/J m 386574.0 0.0   1   0.0 0.0 386574.0, 386574.0 -0.49
C58/J m 260581.0 0.0   1   0.0 0.0 260581.0, 260581.0 -1.21
CAST/EiJ m 257758.0 0.0   1   0.0 0.0 257758.0, 257758.0 -1.23
CBA/J m 393765.0 0.0   1   0.0 0.0 393765.0, 393765.0 -0.45
CE/J m 532266.0 0.0   1   0.0 0.0 532266.0, 532266.0 0.34
CXB11/HiAJ m 701295.0 156394.0   2   110587.0 0.223 590707.0, 811882.0 1.31
CXB12/HiAJ m 600992.0 79611.0   2   56294.0 0.132 544699.0, 657286.0 0.73
CXB13/HiAJ m 762351.0 99279.0   3 57319.0 0.13 661805.0, 860312.0 1.66
CXB1/ByJ m 979333.0 113397.0   3 65470.0 0.116 875878.0, 1100570.0 2.9
CXB2/ByJ m 574651.0 162253.0   3 93677.0 0.282 397850.0, 716735.0 0.58
CXB3/ByJ m 660898.0 40621.0   2   28723.0 0.0615 632175.0, 689621.0 1.08
CXB4/ByJ m 820797.0 138068.0   2   97628.0 0.168 723168.0, 918425.0 1.99
CXB6/ByJ m 737414.0 168802.0   3 97458.0 0.229 570622.0, 908157.0 1.51
CXB7/ByJ m 725916.0 45164.0   2   31936.0 0.0622 693980.0, 757852.0 1.45
CXB8/HiAJ m 824224.0 94429.0   3 54519.0 0.115 718995.0, 901577.0 2.01
CXB9/HiAJ m 760755.0 257856.0   3 148873.0 0.339 483958.0, 994166.0 1.65
DBA/2J m 221440.0 24464.0   4 12232.0 0.11 196728.0, 244346.0 -1.44
FVB/NJ m 263696.0 0.0   1   0.0 0.0 263696.0, 263696.0 -1.19
I/LnJ m 302479.0 0.0   1   0.0 0.0 302479.0, 302479.0 -0.97
KK/HlJ m 482133.0 0.0   1   0.0 0.0 482133.0, 482133.0 0.05
LG/J m 283821.0 0.0   1   0.0 0.0 283821.0, 283821.0 -1.08
LP/J m 458999.0 0.0   1   0.0 0.0 458999.0, 458999.0 -0.08
MA/MyJ m 296840.0 0.0   1   0.0 0.0 296840.0, 296840.0 -1.0
NOD/ShiLtJ m 321782.0 0.0   1   0.0 0.0 321782.0, 321782.0 -0.86
NON/ShiLtJ m 539096.0 0.0   1   0.0 0.0 539096.0, 539096.0 0.38
NZW/LacJ m 586141.0 0.0   1   0.0 0.0 586141.0, 586141.0 0.65
PL/J m 470872.0 0.0   1   0.0 0.0 470872.0, 470872.0 -0.01
RIIIS/J m 390974.0 0.0   1   0.0 0.0 390974.0, 390974.0 -0.47
SEA/GnJ m 379738.0 0.0   1   0.0 0.0 379738.0, 379738.0 -0.53
SJL/J m 207332.0 0.0   1   0.0 0.0 207332.0, 207332.0 -1.52
SM/J m 223468.0 0.0   1   0.0 0.0 223468.0, 223468.0 -1.42
SWR/J m 297197.0 0.0   1   0.0 0.0 297197.0, 297197.0 -1.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 535508.5 99466.688 737649.1306 333367.8694
AXB19b/PgnJ m 347879.85 99466.688 550020.4806 145739.2194
AXB24/PgnJ m 611790.75 99466.688 813931.3806 409650.1194
BALB/cJ m 329555.4 81214.2107 494602.5338 164508.2662
BXA16/PgnJ m 603935.55 99466.688 806076.1806 401794.9194
BXD19/TyJ m 398321.95 99466.688 600462.5806 196181.3194
BXD28/TyJ m 470445.95 99466.688 672586.5806 268305.3194
BXH4/TyJ m 687554.0 99466.688 889694.6306 485413.3694
C3H/HeJ m 402251.35 99466.688 604391.9806 200110.7194
C57BL/6J m 550784.08 62908.2571 678629.0401 422939.1199
CXB11/HiAJ m 701294.55 99466.688 903435.1806 499153.9194
CXB12/HiAJ m 600992.35 99466.688 803132.9806 398851.7194
CXB13/HiAJ m 762350.7 81214.2107 927397.8338 597303.5662
CXB1/ByJ m 979333.1 81214.2107 1144380.2338 814285.9662
CXB2/ByJ m 574650.8333 81214.2107 739697.9671 409603.6996
CXB3/ByJ m 660898.0 99466.688 863038.6306 458757.3694
CXB4/ByJ m 820796.7 99466.688 1022937.3306 618656.0694
CXB6/ByJ m 737414.0333 81214.2107 902461.1671 572366.8996
CXB7/ByJ m 725915.85 99466.688 928056.4806 523775.2194
CXB8/HiAJ m 824224.0667 81214.2107 989271.2004 659176.9329
CXB9/HiAJ m 760755.3667 81214.2107 925802.5004 595708.2329
DBA/2J m 221439.8 70333.5696 364374.8107 78504.7893




  GWAS USING LINEAR MIXED MODELS