Project measure / variable:   HMDPpheno10   pseudouridine

ID, description, units MPD:50521   pseudouridine   pseudouridine (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno10 - pseudouridine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means19823   None
Median of the strain means18234   None
SD of the strain means± 6498
Coefficient of variation (CV)0.328
Min–max range of strain means5912   –   49826   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 1170431602.7249 55734838.225 1.8928 0.0475
Residuals 34 1001141868.1687 29445349.0638


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 26372.0 0.0   1   0.0 0.0 26372.0, 26372.0 1.01
A/J m 31231.0 14693.0   2   10390.0 0.47 20841.0, 41621.0 1.76
AKR/J m 18566.0 0.0   1   0.0 0.0 18566.0, 18566.0 -0.19
AXB10/PgnJ m 12258.0 0.0   1   0.0 0.0 12258.0, 12258.0 -1.16
AXB12/PgnJ m 21061.0 0.0   1   0.0 0.0 21061.0, 21061.0 0.19
AXB13/PgnJ m 22187.0 0.0   1   0.0 0.0 22187.0, 22187.0 0.36
AXB15/PgnJ m 28483.0 0.0   1   0.0 0.0 28483.0, 28483.0 1.33
AXB19a/PgnJ m 21364.0 0.0   1   0.0 0.0 21364.0, 21364.0 0.24
AXB19b/PgnJ m 22943.0 6598.0   2   4666.0 0.288 18277.0, 27609.0 0.48
AXB19/PgnJ m 22095.0 0.0   1   0.0 0.0 22095.0, 22095.0 0.35
AXB1/PgnJ m 25077.0 0.0   1   0.0 0.0 25077.0, 25077.0 0.81
AXB23/PgnJ m 13858.0 0.0   1   0.0 0.0 13858.0, 13858.0 -0.92
AXB24/PgnJ m 17093.0 8226.0   2   5817.0 0.481 11276.0, 22909.0 -0.42
AXB2/PgnJ m 21484.0 0.0   1   0.0 0.0 21484.0, 21484.0 0.26
AXB4/PgnJ m 15291.0 0.0   1   0.0 0.0 15291.0, 15291.0 -0.7
AXB5/PgnJ m 17107.0 0.0   1   0.0 0.0 17107.0, 17107.0 -0.42
AXB6/PgnJ m 26750.0 0.0   1   0.0 0.0 26750.0, 26750.0 1.07
AXB8/PgnJ m 15712.0 0.0   1   0.0 0.0 15712.0, 15712.0 -0.63
BALB/cJ m 21366.0 8083.0   3 4667.0 0.378 15706.0, 30623.0 0.24
BTBR T+ Itpr3tf/J m 19642.0 0.0   1   0.0 0.0 19642.0, 19642.0 -0.03
BUB/BnJ m 25573.0 0.0   1   0.0 0.0 25573.0, 25573.0 0.88
BXA11/PgnJ m 15898.0 0.0   1   0.0 0.0 15898.0, 15898.0 -0.6
BXA12/PgnJ m 18302.0 0.0   1   0.0 0.0 18302.0, 18302.0 -0.23
BXA13/PgnJ m 22385.0 0.0   1   0.0 0.0 22385.0, 22385.0 0.39
BXA14/PgnJ m 12262.0 0.0   1   0.0 0.0 12262.0, 12262.0 -1.16
BXA16/PgnJ m 16820.0 4447.0   2   3145.0 0.264 13675.0, 19964.0 -0.46
BXA1/PgnJ m 14339.0 0.0   1   0.0 0.0 14339.0, 14339.0 -0.84
BXA24/PgnJ m 23983.0 0.0   1   0.0 0.0 23983.0, 23983.0 0.64
BXA25/PgnJ m 17931.0 0.0   1   0.0 0.0 17931.0, 17931.0 -0.29
BXA26/PgnJ m 27293.0 0.0   1   0.0 0.0 27293.0, 27293.0 1.15
BXA2/PgnJ m 14104.0 0.0   1   0.0 0.0 14104.0, 14104.0 -0.88
BXA4/PgnJ m 23278.0 0.0   1   0.0 0.0 23278.0, 23278.0 0.53
BXA7/PgnJ m 26952.0 0.0   1   0.0 0.0 26952.0, 26952.0 1.1
BXA8/PgnJ m 16445.0 0.0   1   0.0 0.0 16445.0, 16445.0 -0.52
BXD11/TyJ m 15376.0 0.0   1   0.0 0.0 15376.0, 15376.0 -0.68
BXD12/TyJ m 26419.0 0.0   1   0.0 0.0 26419.0, 26419.0 1.02
BXD13/TyJ m 9229.0 0.0   1   0.0 0.0 9229.0, 9229.0 -1.63
BXD14/TyJ m 22214.0 0.0   1   0.0 0.0 22214.0, 22214.0 0.37
BXD15/TyJ m 24322.0 0.0   1   0.0 0.0 24322.0, 24322.0 0.69
BXD18/TyJ m 11979.0 0.0   1   0.0 0.0 11979.0, 11979.0 -1.21
BXD19/TyJ m 19130.0 4501.0   2   3183.0 0.235 15948.0, 22313.0 -0.11
BXD1/TyJ m 14722.0 0.0   1   0.0 0.0 14722.0, 14722.0 -0.79
BXD20/TyJ m 15555.0 0.0   1   0.0 0.0 15555.0, 15555.0 -0.66
BXD21/TyJ m 13975.0 0.0   1   0.0 0.0 13975.0, 13975.0 -0.9
BXD22/TyJ m 27270.0 0.0   1   0.0 0.0 27270.0, 27270.0 1.15
BXD24/TyJ m 15660.0 0.0   1   0.0 0.0 15660.0, 15660.0 -0.64
BXD24/TyJ-Cep290rd16/J m 13657.0 0.0   1   0.0 0.0 13657.0, 13657.0 -0.95
BXD28/TyJ m 12128.0 466.0   2   329.0 0.0384 11798.0, 12457.0 -1.18
BXD29-Tlr4lps-2J/J m 26725.0 0.0   1   0.0 0.0 26725.0, 26725.0 1.06
BXD2/TyJ m 18140.0 0.0   1   0.0 0.0 18140.0, 18140.0 -0.26
BXD32/TyJ m 14578.0 0.0   1   0.0 0.0 14578.0, 14578.0 -0.81
BXD33/TyJ m 16488.0 0.0   1   0.0 0.0 16488.0, 16488.0 -0.51
BXD34/TyJ m 16387.0 0.0   1   0.0 0.0 16387.0, 16387.0 -0.53
BXD36/TyJ m 10423.0 0.0   1   0.0 0.0 10423.0, 10423.0 -1.45
BXD38/TyJ m 16214.0 0.0   1   0.0 0.0 16214.0, 16214.0 -0.56
BXD39/TyJ m 12019.0 0.0   1   0.0 0.0 12019.0, 12019.0 -1.2
BXD40/TyJ m 18166.0 0.0   1   0.0 0.0 18166.0, 18166.0 -0.26
BXD42/TyJ m 16213.0 0.0   1   0.0 0.0 16213.0, 16213.0 -0.56
BXD5/TyJ m 25940.0 0.0   1   0.0 0.0 25940.0, 25940.0 0.94
BXD6/TyJ m 15322.0 0.0   1   0.0 0.0 15322.0, 15322.0 -0.69
BXD8/TyJ m 10794.0 0.0   1   0.0 0.0 10794.0, 10794.0 -1.39
BXD9/TyJ m 19553.0 0.0   1   0.0 0.0 19553.0, 19553.0 -0.04
BXH10/TyJ m 28488.0 0.0   1   0.0 0.0 28488.0, 28488.0 1.33
BXH19/TyJ m 17197.0 0.0   1   0.0 0.0 17197.0, 17197.0 -0.4
BXH20/KccJ m 12911.0 0.0   1   0.0 0.0 12911.0, 12911.0 -1.06
BXH22/KccJ m 16220.0 0.0   1   0.0 0.0 16220.0, 16220.0 -0.55
BXH2/TyJ m 22140.0 0.0   1   0.0 0.0 22140.0, 22140.0 0.36
BXH4/TyJ m 15373.0 10066.0   2   7118.0 0.655 8255.0, 22490.0 -0.68
BXH6/TyJ m 37331.0 0.0   1   0.0 0.0 37331.0, 37331.0 2.69
BXH7/TyJ m 5912.0 0.0   1   0.0 0.0 5912.0, 5912.0 -2.14
BXH8/TyJ m 19559.0 0.0   1   0.0 0.0 19559.0, 19559.0 -0.04
BXH9/TyJ m 17711.0 0.0   1   0.0 0.0 17711.0, 17711.0 -0.33
C3H/HeJ m 32093.0 3997.0   2   2826.0 0.125 29267.0, 34919.0 1.89
C57BL/6J m 18429.0 2151.0   5 962.0 0.117 16562.0, 21996.0 -0.21
C57L/J m 14884.0 0.0   1   0.0 0.0 14884.0, 14884.0 -0.76
C58/J m 19147.0 0.0   1   0.0 0.0 19147.0, 19147.0 -0.1
CAST/EiJ m 14964.0 0.0   1   0.0 0.0 14964.0, 14964.0 -0.75
CBA/J m 20722.0 0.0   1   0.0 0.0 20722.0, 20722.0 0.14
CE/J m 16093.0 0.0   1   0.0 0.0 16093.0, 16093.0 -0.57
CXB11/HiAJ m 22512.0 11273.0   2   7972.0 0.501 14541.0, 30484.0 0.41
CXB12/HiAJ m 21060.0 1244.0   2   879.0 0.0591 20181.0, 21940.0 0.19
CXB13/HiAJ m 21709.0 4255.0   3 2457.0 0.196 17168.0, 25605.0 0.29
CXB1/ByJ m 15885.0 6943.0   3 4009.0 0.437 10406.0, 23693.0 -0.61
CXB2/ByJ m 17027.0 4212.0   3 2432.0 0.247 12274.0, 20294.0 -0.43
CXB3/ByJ m 20295.0 1999.0   2   1413.0 0.0985 18882.0, 21708.0 0.07
CXB4/ByJ m 10907.0 642.0   2   454.0 0.0588 10454.0, 11361.0 -1.37
CXB6/ByJ m 14784.0 2375.0   3 1371.0 0.161 12365.0, 17111.0 -0.78
CXB7/ByJ m 15338.0 1320.0   2   933.0 0.086 14405.0, 16271.0 -0.69
CXB8/HiAJ m 17365.0 1906.0   3 1100.0 0.11 15336.0, 19118.0 -0.38
CXB9/HiAJ m 16493.0 3640.0   3 2102.0 0.221 14031.0, 20675.0 -0.51
DBA/2J m 20027.0 2541.0   4 1270.0 0.127 16617.0, 22767.0 0.03
FVB/NJ m 15650.0 0.0   1   0.0 0.0 15650.0, 15650.0 -0.64
I/LnJ m 21119.0 0.0   1   0.0 0.0 21119.0, 21119.0 0.2
KK/HlJ m 49826.0 0.0   1   0.0 0.0 49826.0, 49826.0 4.62
LG/J m 34199.0 0.0   1   0.0 0.0 34199.0, 34199.0 2.21
LP/J m 24392.0 0.0   1   0.0 0.0 24392.0, 24392.0 0.7
MA/MyJ m 16014.0 0.0   1   0.0 0.0 16014.0, 16014.0 -0.59
NOD/ShiLtJ m 27285.0 0.0   1   0.0 0.0 27285.0, 27285.0 1.15
NON/ShiLtJ m 17561.0 0.0   1   0.0 0.0 17561.0, 17561.0 -0.35
NZW/LacJ m 26785.0 0.0   1   0.0 0.0 26785.0, 26785.0 1.07
PL/J m 29789.0 0.0   1   0.0 0.0 29789.0, 29789.0 1.53
RIIIS/J m 16799.0 0.0   1   0.0 0.0 16799.0, 16799.0 -0.47
SEA/GnJ m 27352.0 0.0   1   0.0 0.0 27352.0, 27352.0 1.16
SJL/J m 25568.0 0.0   1   0.0 0.0 25568.0, 25568.0 0.88
SM/J m 21041.0 0.0   1   0.0 0.0 21041.0, 21041.0 0.19
SWR/J m 31201.0 0.0   1   0.0 0.0 31201.0, 31201.0 1.75


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 31231.15 3837.0138 39028.9001 23433.3999
AXB19b/PgnJ m 22942.9 3837.0138 30740.6501 15145.1499
AXB24/PgnJ m 17092.65 3837.0138 24890.4001 9294.8999
BALB/cJ m 21366.3333 3132.9086 27733.1697 14999.497
BXA16/PgnJ m 16819.7 3837.0138 24617.4501 9021.9499
BXD19/TyJ m 19130.35 3837.0138 26928.1001 11332.5999
BXD28/TyJ m 12127.6 3837.0138 19925.3501 4329.8499
BXH4/TyJ m 15372.65 3837.0138 23170.4001 7574.8999
C3H/HeJ m 32093.05 3837.0138 39890.8001 24295.2999
C57BL/6J m 18429.24 2426.7406 23360.9702 13497.5098
CXB11/HiAJ m 22512.2 3837.0138 30309.9501 14714.4499
CXB12/HiAJ m 21060.3 3837.0138 28858.0501 13262.5499
CXB13/HiAJ m 21708.6 3132.9086 28075.4363 15341.7637
CXB1/ByJ m 15884.7333 3132.9086 22251.5697 9517.897
CXB2/ByJ m 17026.6333 3132.9086 23393.4697 10659.797
CXB3/ByJ m 20295.0 3837.0138 28092.7501 12497.2499
CXB4/ByJ m 10907.45 3837.0138 18705.2001 3109.6999
CXB6/ByJ m 14783.9 3132.9086 21150.7363 8417.0637
CXB7/ByJ m 15338.0 3837.0138 23135.7501 7540.2499
CXB8/HiAJ m 17364.8667 3132.9086 23731.703 10998.0303
CXB9/HiAJ m 16492.8 3132.9086 22859.6363 10125.9637
DBA/2J m 20027.4 2713.1784 25541.242 14513.558




  GWAS USING LINEAR MIXED MODELS