Project measure / variable:   HMDPpheno10   methyladenosine

ID, description, units MPD:50512   methyladenosine   liver N1-methyladenosine (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno10 - liver N1-methyladenosine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means66113   None
Median of the strain means64115   None
SD of the strain means± 15671
Coefficient of variation (CV)0.237
Min–max range of strain means38949   –   146081   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 6646762174.4818 316512484.4991 1.8125 0.0597
Residuals 34 5937458183.9603 174631123.0577


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 38949.0 0.0   1   0.0 0.0 38949.0, 38949.0 -1.73
A/J m 65040.0 14953.0   2   10573.0 0.23 54467.0, 75614.0 -0.07
AKR/J m 56245.0 0.0   1   0.0 0.0 56245.0, 56245.0 -0.63
AXB10/PgnJ m 58110.0 0.0   1   0.0 0.0 58110.0, 58110.0 -0.51
AXB12/PgnJ m 69876.0 0.0   1   0.0 0.0 69876.0, 69876.0 0.24
AXB13/PgnJ m 65449.0 0.0   1   0.0 0.0 65449.0, 65449.0 -0.04
AXB15/PgnJ m 73679.0 0.0   1   0.0 0.0 73679.0, 73679.0 0.48
AXB19a/PgnJ m 69160.0 0.0   1   0.0 0.0 69160.0, 69160.0 0.19
AXB19b/PgnJ m 77334.0 12004.0   2   8488.0 0.155 68846.0, 85822.0 0.72
AXB19/PgnJ m 72376.0 0.0   1   0.0 0.0 72376.0, 72376.0 0.4
AXB1/PgnJ m 146081.0 0.0   1   0.0 0.0 146081.0, 146081.0 5.1
AXB23/PgnJ m 78216.0 0.0   1   0.0 0.0 78216.0, 78216.0 0.77
AXB24/PgnJ m 59773.0 7154.0   2   5058.0 0.12 54715.0, 64832.0 -0.4
AXB2/PgnJ m 73556.0 0.0   1   0.0 0.0 73556.0, 73556.0 0.47
AXB4/PgnJ m 97062.0 0.0   1   0.0 0.0 97062.0, 97062.0 1.97
AXB5/PgnJ m 44922.0 0.0   1   0.0 0.0 44922.0, 44922.0 -1.35
AXB6/PgnJ m 88182.0 0.0   1   0.0 0.0 88182.0, 88182.0 1.41
AXB8/PgnJ m 75682.0 0.0   1   0.0 0.0 75682.0, 75682.0 0.61
BALB/cJ m 56592.0 5418.0   3 3128.0 0.0957 51116.0, 61949.0 -0.61
BTBR T+ Itpr3tf/J m 53226.0 0.0   1   0.0 0.0 53226.0, 53226.0 -0.82
BUB/BnJ m 72557.0 0.0   1   0.0 0.0 72557.0, 72557.0 0.41
BXA11/PgnJ m 62023.0 0.0   1   0.0 0.0 62023.0, 62023.0 -0.26
BXA12/PgnJ m 63258.0 0.0   1   0.0 0.0 63258.0, 63258.0 -0.18
BXA13/PgnJ m 83934.0 0.0   1   0.0 0.0 83934.0, 83934.0 1.14
BXA14/PgnJ m 75240.0 0.0   1   0.0 0.0 75240.0, 75240.0 0.58
BXA16/PgnJ m 58023.0 9165.0   2   6481.0 0.158 51542.0, 64504.0 -0.52
BXA1/PgnJ m 51176.0 0.0   1   0.0 0.0 51176.0, 51176.0 -0.95
BXA24/PgnJ m 53361.0 0.0   1   0.0 0.0 53361.0, 53361.0 -0.81
BXA25/PgnJ m 50915.0 0.0   1   0.0 0.0 50915.0, 50915.0 -0.97
BXA26/PgnJ m 72663.0 0.0   1   0.0 0.0 72663.0, 72663.0 0.42
BXA2/PgnJ m 55041.0 0.0   1   0.0 0.0 55041.0, 55041.0 -0.71
BXA4/PgnJ m 62956.0 0.0   1   0.0 0.0 62956.0, 62956.0 -0.2
BXA7/PgnJ m 49640.0 0.0   1   0.0 0.0 49640.0, 49640.0 -1.05
BXA8/PgnJ m 92850.0 0.0   1   0.0 0.0 92850.0, 92850.0 1.71
BXD11/TyJ m 53944.0 0.0   1   0.0 0.0 53944.0, 53944.0 -0.78
BXD12/TyJ m 92818.0 0.0   1   0.0 0.0 92818.0, 92818.0 1.7
BXD13/TyJ m 68488.0 0.0   1   0.0 0.0 68488.0, 68488.0 0.15
BXD14/TyJ m 68140.0 0.0   1   0.0 0.0 68140.0, 68140.0 0.13
BXD15/TyJ m 66054.0 0.0   1   0.0 0.0 66054.0, 66054.0 0.0
BXD18/TyJ m 44163.0 0.0   1   0.0 0.0 44163.0, 44163.0 -1.4
BXD19/TyJ m 60310.0 2030.0   2   1436.0 0.0337 58875.0, 61746.0 -0.37
BXD1/TyJ m 52874.0 0.0   1   0.0 0.0 52874.0, 52874.0 -0.84
BXD20/TyJ m 86026.0 0.0   1   0.0 0.0 86026.0, 86026.0 1.27
BXD21/TyJ m 40564.0 0.0   1   0.0 0.0 40564.0, 40564.0 -1.63
BXD22/TyJ m 93722.0 0.0   1   0.0 0.0 93722.0, 93722.0 1.76
BXD24/TyJ m 62012.0 0.0   1   0.0 0.0 62012.0, 62012.0 -0.26
BXD24/TyJ-Cep290rd16/J m 64162.0 0.0   1   0.0 0.0 64162.0, 64162.0 -0.12
BXD28/TyJ m 58548.0 5252.0   2   3714.0 0.0897 54834.0, 62262.0 -0.48
BXD29-Tlr4lps-2J/J m 74888.0 0.0   1   0.0 0.0 74888.0, 74888.0 0.56
BXD2/TyJ m 73613.0 0.0   1   0.0 0.0 73613.0, 73613.0 0.48
BXD32/TyJ m 82687.0 0.0   1   0.0 0.0 82687.0, 82687.0 1.06
BXD33/TyJ m 70626.0 0.0   1   0.0 0.0 70626.0, 70626.0 0.29
BXD34/TyJ m 49333.0 0.0   1   0.0 0.0 49333.0, 49333.0 -1.07
BXD36/TyJ m 49717.0 0.0   1   0.0 0.0 49717.0, 49717.0 -1.05
BXD38/TyJ m 56582.0 0.0   1   0.0 0.0 56582.0, 56582.0 -0.61
BXD39/TyJ m 61479.0 0.0   1   0.0 0.0 61479.0, 61479.0 -0.3
BXD40/TyJ m 58011.0 0.0   1   0.0 0.0 58011.0, 58011.0 -0.52
BXD42/TyJ m 54365.0 0.0   1   0.0 0.0 54365.0, 54365.0 -0.75
BXD5/TyJ m 59640.0 0.0   1   0.0 0.0 59640.0, 59640.0 -0.41
BXD6/TyJ m 64068.0 0.0   1   0.0 0.0 64068.0, 64068.0 -0.13
BXD8/TyJ m 59001.0 0.0   1   0.0 0.0 59001.0, 59001.0 -0.45
BXD9/TyJ m 64866.0 0.0   1   0.0 0.0 64866.0, 64866.0 -0.08
BXH10/TyJ m 73394.0 0.0   1   0.0 0.0 73394.0, 73394.0 0.46
BXH19/TyJ m 62612.0 0.0   1   0.0 0.0 62612.0, 62612.0 -0.22
BXH20/KccJ m 63592.0 0.0   1   0.0 0.0 63592.0, 63592.0 -0.16
BXH22/KccJ m 65687.0 0.0   1   0.0 0.0 65687.0, 65687.0 -0.03
BXH2/TyJ m 51768.0 0.0   1   0.0 0.0 51768.0, 51768.0 -0.92
BXH4/TyJ m 54938.0 18646.0   2   13185.0 0.339 41753.0, 68123.0 -0.71
BXH6/TyJ m 64200.0 0.0   1   0.0 0.0 64200.0, 64200.0 -0.12
BXH7/TyJ m 68735.0 0.0   1   0.0 0.0 68735.0, 68735.0 0.17
BXH8/TyJ m 57590.0 0.0   1   0.0 0.0 57590.0, 57590.0 -0.54
BXH9/TyJ m 55440.0 0.0   1   0.0 0.0 55440.0, 55440.0 -0.68
C3H/HeJ m 56737.0 9230.0   2   6526.0 0.163 50211.0, 63264.0 -0.6
C57BL/6J m 73279.0 10879.0   5 4865.0 0.148 56694.0, 85043.0 0.46
C57L/J m 69563.0 0.0   1   0.0 0.0 69563.0, 69563.0 0.22
C58/J m 117461.0 0.0   1   0.0 0.0 117461.0, 117461.0 3.28
CAST/EiJ m 52200.0 0.0   1   0.0 0.0 52200.0, 52200.0 -0.89
CBA/J m 43471.0 0.0   1   0.0 0.0 43471.0, 43471.0 -1.44
CE/J m 46212.0 0.0   1   0.0 0.0 46212.0, 46212.0 -1.27
CXB11/HiAJ m 86193.0 14796.0   2   10462.0 0.172 75730.0, 96655.0 1.28
CXB12/HiAJ m 65095.0 890.0   2   629.0 0.0137 64466.0, 65724.0 -0.06
CXB13/HiAJ m 81638.0 32739.0   3 18902.0 0.401 60491.0, 119348.0 0.99
CXB1/ByJ m 56699.0 16863.0   3 9736.0 0.297 42705.0, 75421.0 -0.6
CXB2/ByJ m 82364.0 7486.0   3 4322.0 0.0909 74507.0, 89413.0 1.04
CXB3/ByJ m 74182.0 5499.0   2   3888.0 0.0741 70294.0, 78070.0 0.51
CXB4/ByJ m 60195.0 9659.0   2   6830.0 0.16 53365.0, 67025.0 -0.38
CXB6/ByJ m 58335.0 8726.0   3 5038.0 0.15 48368.0, 64598.0 -0.5
CXB7/ByJ m 73606.0 23480.0   2   16603.0 0.319 57003.0, 90210.0 0.48
CXB8/HiAJ m 71764.0 8559.0   3 4942.0 0.119 62746.0, 79775.0 0.36
CXB9/HiAJ m 77977.0 7496.0   3 4328.0 0.0961 73622.0, 86632.0 0.76
DBA/2J m 47107.0 10127.0   4 5063.0 0.215 34785.0, 57326.0 -1.21
FVB/NJ m 54899.0 0.0   1   0.0 0.0 54899.0, 54899.0 -0.72
I/LnJ m 72751.0 0.0   1   0.0 0.0 72751.0, 72751.0 0.42
KK/HlJ m 77891.0 0.0   1   0.0 0.0 77891.0, 77891.0 0.75
LG/J m 60141.0 0.0   1   0.0 0.0 60141.0, 60141.0 -0.38
LP/J m 72730.0 0.0   1   0.0 0.0 72730.0, 72730.0 0.42
MA/MyJ m 41558.0 0.0   1   0.0 0.0 41558.0, 41558.0 -1.57
NOD/ShiLtJ m 47484.0 0.0   1   0.0 0.0 47484.0, 47484.0 -1.19
NON/ShiLtJ m 55894.0 0.0   1   0.0 0.0 55894.0, 55894.0 -0.65
NZW/LacJ m 68278.0 0.0   1   0.0 0.0 68278.0, 68278.0 0.14
PL/J m 82050.0 0.0   1   0.0 0.0 82050.0, 82050.0 1.02
RIIIS/J m 78561.0 0.0   1   0.0 0.0 78561.0, 78561.0 0.79
SEA/GnJ m 57515.0 0.0   1   0.0 0.0 57515.0, 57515.0 -0.55
SJL/J m 66120.0 0.0   1   0.0 0.0 66120.0, 66120.0 0.0
SM/J m 60058.0 0.0   1   0.0 0.0 60058.0, 60058.0 -0.39
SWR/J m 86129.0 0.0   1   0.0 0.0 86129.0, 86129.0 1.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 65040.4 9344.2796 84030.2609 46050.5391
AXB19b/PgnJ m 77334.1 9344.2796 96323.9609 58344.2391
AXB24/PgnJ m 59773.25 9344.2796 78763.1109 40783.3891
BALB/cJ m 56592.2667 7629.5724 72097.4232 41087.1101
BXA16/PgnJ m 58022.75 9344.2796 77012.6109 39032.8891
BXD19/TyJ m 60310.3 9344.2796 79300.1609 41320.4391
BXD28/TyJ m 58548.25 9344.2796 77538.1109 39558.3891
BXH4/TyJ m 54938.05 9344.2796 73927.9109 35948.1891
C3H/HeJ m 56737.3 9344.2796 75727.1609 37747.4391
C57BL/6J m 73279.14 5909.8413 85289.3826 61268.8974
CXB11/HiAJ m 86192.55 9344.2796 105182.4109 67202.6891
CXB12/HiAJ m 65095.15 9344.2796 84085.0109 46105.2891
CXB13/HiAJ m 81637.6333 7629.5724 97142.7899 66132.4768
CXB1/ByJ m 56699.3333 7629.5724 72204.4899 41194.1768
CXB2/ByJ m 82364.2 7629.5724 97869.3565 66859.0435
CXB3/ByJ m 74182.25 9344.2796 93172.1109 55192.3891
CXB4/ByJ m 60195.15 9344.2796 79185.0109 41205.2891
CXB6/ByJ m 58335.4667 7629.5724 73840.6232 42830.3101
CXB7/ByJ m 73606.35 9344.2796 92596.2109 54616.4891
CXB8/HiAJ m 71764.5 7629.5724 87269.6565 56259.3435
CXB9/HiAJ m 77976.5333 7629.5724 93481.6899 62471.3768
DBA/2J m 47107.35 6607.4035 60535.2094 33679.4906




  GWAS USING LINEAR MIXED MODELS