Project measure / variable:   HMDPpheno10   adenine

ID, description, units MPD:50507   adenine   adenine (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   105 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno10 - adenine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested105 strains
Mean of the strain means100250   None
Median of the strain means89767   None
SD of the strain means± 60040
Coefficient of variation (CV)0.599
Min–max range of strain means32267   –   527110   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 63781665853.9146 3037222183.5197 1.178 0.3274
Residuals 34 87660110806.4047 2578238553.1296


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 92266.0 0.0   1   0.0 0.0 92266.0, 92266.0 -0.13
A/J m 58168.0 10967.0   2   7755.0 0.189 50413.0, 65923.0 -0.7
AKR/J m 81508.0 0.0   1   0.0 0.0 81508.0, 81508.0 -0.31
AXB10/PgnJ m 53747.0 0.0   1   0.0 0.0 53747.0, 53747.0 -0.77
AXB12/PgnJ m 57181.0 0.0   1   0.0 0.0 57181.0, 57181.0 -0.72
AXB13/PgnJ m 67496.0 0.0   1   0.0 0.0 67496.0, 67496.0 -0.55
AXB15/PgnJ m 98442.0 0.0   1   0.0 0.0 98442.0, 98442.0 -0.03
AXB19a/PgnJ m 111034.0 0.0   1   0.0 0.0 111034.0, 111034.0 0.18
AXB19b/PgnJ m 140688.0 26677.0   2   18864.0 0.19 121824.0, 159552.0 0.67
AXB19/PgnJ m 91001.0 0.0   1   0.0 0.0 91001.0, 91001.0 -0.15
AXB1/PgnJ m 32267.0 0.0   1   0.0 0.0 32267.0, 32267.0 -1.13
AXB23/PgnJ m 49343.0 0.0   1   0.0 0.0 49343.0, 49343.0 -0.85
AXB24/PgnJ m 73339.0 7608.0   2   5380.0 0.104 67960.0, 78719.0 -0.45
AXB2/PgnJ m 131269.0 0.0   1   0.0 0.0 131269.0, 131269.0 0.52
AXB4/PgnJ m 83467.0 0.0   1   0.0 0.0 83467.0, 83467.0 -0.28
AXB5/PgnJ m 68089.0 0.0   1   0.0 0.0 68089.0, 68089.0 -0.54
AXB6/PgnJ m 64181.0 0.0   1   0.0 0.0 64181.0, 64181.0 -0.6
AXB8/PgnJ m 132954.0 0.0   1   0.0 0.0 132954.0, 132954.0 0.54
BALB/cJ m 91687.0 7159.0   3 4133.0 0.0781 86086.0, 99753.0 -0.14
BTBR T+ Itpr3tf/J m 136435.0 0.0   1   0.0 0.0 136435.0, 136435.0 0.6
BUB/BnJ m 82602.0 0.0   1   0.0 0.0 82602.0, 82602.0 -0.29
BXA11/PgnJ m 43517.0 0.0   1   0.0 0.0 43517.0, 43517.0 -0.94
BXA12/PgnJ m 72858.0 0.0   1   0.0 0.0 72858.0, 72858.0 -0.46
BXA13/PgnJ m 100512.0 0.0   1   0.0 0.0 100512.0, 100512.0 0.0
BXA14/PgnJ m 145203.0 0.0   1   0.0 0.0 145203.0, 145203.0 0.75
BXA16/PgnJ m 53604.0 28337.0   2   20037.0 0.529 33567.0, 73641.0 -0.78
BXA1/PgnJ m 61802.0 0.0   1   0.0 0.0 61802.0, 61802.0 -0.64
BXA24/PgnJ m 66650.0 0.0   1   0.0 0.0 66650.0, 66650.0 -0.56
BXA25/PgnJ m 71139.0 0.0   1   0.0 0.0 71139.0, 71139.0 -0.48
BXA26/PgnJ m 90944.0 0.0   1   0.0 0.0 90944.0, 90944.0 -0.15
BXA2/PgnJ m 78355.0 0.0   1   0.0 0.0 78355.0, 78355.0 -0.36
BXA4/PgnJ m 58797.0 0.0   1   0.0 0.0 58797.0, 58797.0 -0.69
BXA7/PgnJ m 80152.0 0.0   1   0.0 0.0 80152.0, 80152.0 -0.33
BXA8/PgnJ m 82810.0 0.0   1   0.0 0.0 82810.0, 82810.0 -0.29
BXD11/TyJ m 59765.0 0.0   1   0.0 0.0 59765.0, 59765.0 -0.67
BXD12/TyJ m 83706.0 0.0   1   0.0 0.0 83706.0, 83706.0 -0.28
BXD13/TyJ m 105231.0 0.0   1   0.0 0.0 105231.0, 105231.0 0.08
BXD14/TyJ m 135426.0 0.0   1   0.0 0.0 135426.0, 135426.0 0.59
BXD15/TyJ m 86180.0 0.0   1   0.0 0.0 86180.0, 86180.0 -0.23
BXD18/TyJ m 38977.0 0.0   1   0.0 0.0 38977.0, 38977.0 -1.02
BXD19/TyJ m 113392.0 38189.0   2   27003.0 0.337 86388.0, 140395.0 0.22
BXD1/TyJ m 98935.0 0.0   1   0.0 0.0 98935.0, 98935.0 -0.02
BXD21/TyJ m 74720.0 0.0   1   0.0 0.0 74720.0, 74720.0 -0.43
BXD22/TyJ m 86451.0 0.0   1   0.0 0.0 86451.0, 86451.0 -0.23
BXD24/TyJ m 103938.0 0.0   1   0.0 0.0 103938.0, 103938.0 0.06
BXD24/TyJ-Cep290rd16/J m 94057.0 0.0   1   0.0 0.0 94057.0, 94057.0 -0.1
BXD28/TyJ m 75114.0 8185.0   2   5788.0 0.109 69326.0, 80901.0 -0.42
BXD29-Tlr4lps-2J/J m 128884.0 0.0   1   0.0 0.0 128884.0, 128884.0 0.48
BXD2/TyJ m 99815.0 0.0   1   0.0 0.0 99815.0, 99815.0 -0.01
BXD32/TyJ m 82198.0 0.0   1   0.0 0.0 82198.0, 82198.0 -0.3
BXD33/TyJ m 62075.0 0.0   1   0.0 0.0 62075.0, 62075.0 -0.64
BXD34/TyJ m 74565.0 0.0   1   0.0 0.0 74565.0, 74565.0 -0.43
BXD36/TyJ m 116542.0 0.0   1   0.0 0.0 116542.0, 116542.0 0.27
BXD38/TyJ m 130892.0 0.0   1   0.0 0.0 130892.0, 130892.0 0.51
BXD39/TyJ m 91596.0 0.0   1   0.0 0.0 91596.0, 91596.0 -0.14
BXD40/TyJ m 69043.0 0.0   1   0.0 0.0 69043.0, 69043.0 -0.52
BXD42/TyJ m 108960.0 0.0   1   0.0 0.0 108960.0, 108960.0 0.15
BXD5/TyJ m 128283.0 0.0   1   0.0 0.0 128283.0, 128283.0 0.47
BXD6/TyJ m 69586.0 0.0   1   0.0 0.0 69586.0, 69586.0 -0.51
BXD8/TyJ m 35759.0 0.0   1   0.0 0.0 35759.0, 35759.0 -1.07
BXD9/TyJ m 113950.0 0.0   1   0.0 0.0 113950.0, 113950.0 0.23
BXH10/TyJ m 231849.0 0.0   1   0.0 0.0 231849.0, 231849.0 2.19
BXH19/TyJ m 151696.0 0.0   1   0.0 0.0 151696.0, 151696.0 0.86
BXH20/KccJ m 65613.0 0.0   1   0.0 0.0 65613.0, 65613.0 -0.58
BXH22/KccJ m 62646.0 0.0   1   0.0 0.0 62646.0, 62646.0 -0.63
BXH2/TyJ m 79702.0 0.0   1   0.0 0.0 79702.0, 79702.0 -0.34
BXH4/TyJ m 98499.0 26706.0   2   18884.0 0.271 79615.0, 117383.0 -0.03
BXH6/TyJ m 91995.0 0.0   1   0.0 0.0 91995.0, 91995.0 -0.14
BXH7/TyJ m 76253.0 0.0   1   0.0 0.0 76253.0, 76253.0 -0.4
BXH8/TyJ m 89767.0 0.0   1   0.0 0.0 89767.0, 89767.0 -0.17
BXH9/TyJ m 58490.0 0.0   1   0.0 0.0 58490.0, 58490.0 -0.7
C3H/HeJ m 127974.0 48792.0   2   34501.0 0.381 93473.0, 162476.0 0.46
C57BL/6J m 134553.0 63987.0   5 28616.0 0.476 59492.0, 230227.0 0.57
C57L/J m 79818.0 0.0   1   0.0 0.0 79818.0, 79818.0 -0.34
C58/J m 82750.0 0.0   1   0.0 0.0 82750.0, 82750.0 -0.29
CAST/EiJ m 382989.0 0.0   1   0.0 0.0 382989.0, 382989.0 4.71
CBA/J m 92863.0 0.0   1   0.0 0.0 92863.0, 92863.0 -0.12
CE/J m 83868.0 0.0   1   0.0 0.0 83868.0, 83868.0 -0.27
CXB11/HiAJ m 142433.0 39892.0   2   28208.0 0.28 114225.0, 170641.0 0.7
CXB12/HiAJ m 52283.0 638.0   2   451.0 0.0122 51832.0, 52735.0 -0.8
CXB13/HiAJ m 135197.0 112151.0   3 64750.0 0.83 58726.0, 263942.0 0.58
CXB1/ByJ m 93095.0 20831.0   3 12027.0 0.224 71884.0, 113523.0 -0.12
CXB2/ByJ m 138099.0 83394.0   3 48147.0 0.604 62996.0, 227844.0 0.63
CXB3/ByJ m 91303.0 56020.0   2   39612.0 0.614 51692.0, 130915.0 -0.15
CXB4/ByJ m 72257.0 16313.0   2   11535.0 0.226 60722.0, 83792.0 -0.47
CXB6/ByJ m 188468.0 82296.0   3 47514.0 0.437 103697.0, 268043.0 1.47
CXB7/ByJ m 67517.0 9578.0   2   6773.0 0.142 60744.0, 74290.0 -0.55
CXB8/HiAJ m 122958.0 16657.0   3 9617.0 0.135 108431.0, 141138.0 0.38
CXB9/HiAJ m 107960.0 44222.0   3 25532.0 0.41 67002.0, 154848.0 0.13
DBA/2J m 115261.0 24744.0   4 12372.0 0.215 92926.0, 138573.0 0.25
FVB/NJ m 125228.0 0.0   1   0.0 0.0 125228.0, 125228.0 0.42
I/LnJ m 78541.0 0.0   1   0.0 0.0 78541.0, 78541.0 -0.36
KK/HlJ m 527110.0 0.0   1   0.0 0.0 527110.0, 527110.0 7.11
LG/J m 87502.0 0.0   1   0.0 0.0 87502.0, 87502.0 -0.21
LP/J m 90993.0 0.0   1   0.0 0.0 90993.0, 90993.0 -0.15
MA/MyJ m 71543.0 0.0   1   0.0 0.0 71543.0, 71543.0 -0.48
NOD/ShiLtJ m 108694.0 0.0   1   0.0 0.0 108694.0, 108694.0 0.14
NON/ShiLtJ m 131184.0 0.0   1   0.0 0.0 131184.0, 131184.0 0.52
NZW/LacJ m 56490.0 0.0   1   0.0 0.0 56490.0, 56490.0 -0.73
PL/J m 128788.0 0.0   1   0.0 0.0 128788.0, 128788.0 0.48
RIIIS/J m 92686.0 0.0   1   0.0 0.0 92686.0, 92686.0 -0.13
SEA/GnJ m 87834.0 0.0   1   0.0 0.0 87834.0, 87834.0 -0.21
SJL/J m 88680.0 0.0   1   0.0 0.0 88680.0, 88680.0 -0.19
SM/J m 117677.0 0.0   1   0.0 0.0 117677.0, 117677.0 0.29
SWR/J m 143605.0 0.0   1   0.0 0.0 143605.0, 143605.0 0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 58168.3 35904.3072 131134.6312 0.0
AXB19b/PgnJ m 140688.1 35904.3072 213654.4312 67721.7688
AXB24/PgnJ m 73339.25 35904.3072 146305.5812 372.9188
BALB/cJ m 91687.1333 29315.7441 151263.8933 32110.3734
BXA16/PgnJ m 53603.75 35904.3072 126570.0812 0.0
BXD19/TyJ m 113391.65 35904.3072 186357.9812 40425.3188
BXD28/TyJ m 75113.5 35904.3072 148079.8312 2147.1688
BXH4/TyJ m 98498.95 35904.3072 171465.2812 25532.6188
C3H/HeJ m 127974.2 35904.3072 200940.5312 55007.8688
C57BL/6J m 134552.82 22707.8777 180700.7798 88404.8602
CXB11/HiAJ m 142433.3 35904.3072 215399.6312 69466.9688
CXB12/HiAJ m 52283.35 35904.3072 125249.6812 0.0
CXB13/HiAJ m 135197.2 29315.7441 194773.9599 75620.4401
CXB1/ByJ m 93094.8667 29315.7441 152671.6266 33518.1067
CXB2/ByJ m 138099.3 29315.7441 197676.0599 78522.5401
CXB3/ByJ m 91303.3 35904.3072 164269.6312 18336.9688
CXB4/ByJ m 72257.4 35904.3072 145223.7312 0.0
CXB6/ByJ m 188468.3667 29315.7441 248045.1266 128891.6067
CXB7/ByJ m 67516.85 35904.3072 140483.1812 0.0
CXB8/HiAJ m 122958.0667 29315.7441 182534.8266 63381.3067
CXB9/HiAJ m 107960.1 29315.7441 167536.8599 48383.3401
DBA/2J m 115260.8 25388.1791 166855.7876 63665.8124




  GWAS USING LINEAR MIXED MODELS