Project measure / variable:   HMDPpheno10   thymine

ID, description, units MPD:50517   thymine   thymine (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno10 - thymine (16h fast), relative abundance

AXB1/PgnJC58/JBXD22/TyJAXB4/PgnJSWR/JNOD/ShiLtJAXB19b/PgnJBXD24/TyJ-Cep290<rd16>/JBTBR T<+> Itpr3<tf>/JBXH19/TyJBXD13/TyJI/LnJCXB8/HiAJBXD40/TyJBXA24/PgnJBXH20/KccJBXD2/TyJFVB/NJBXD12/TyJBXH22/KccJBXH7/TyJLG/JBXD1/TyJCXB13/HiAJLP/JBXD29-Tlr4<lps-2J>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 (no units) 20,00040,00060,00080,000100,000120,000140,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means58204   None
Median of the strain means56046   None
SD of the strain means± 19578
Coefficient of variation (CV)0.336
Min–max range of strain means16136   –   151974   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 9983030303.8871 475382395.4232 4.2816 0.0001
Residuals 34 3774963732.0922 111028345.0615


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 106 (106)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 33921.0 0.0   1   0.0 0.0 33921.0, 33921.0 -1.24
A/J m 57574.0 11034.0   2   7802.0 0.192 49772.0, 65377.0 -0.03
AKR/J m 55874.0 0.0   1   0.0 0.0 55874.0, 55874.0 -0.12
AXB10/PgnJ m 47608.0 0.0   1   0.0 0.0 47608.0, 47608.0 -0.54
AXB12/PgnJ m 54261.0 0.0   1   0.0 0.0 54261.0, 54261.0 -0.2
AXB13/PgnJ m 64876.0 0.0   1   0.0 0.0 64876.0, 64876.0 0.34
AXB15/PgnJ m 51775.0 0.0   1   0.0 0.0 51775.0, 51775.0 -0.33
AXB19a/PgnJ m 59413.0 0.0   1   0.0 0.0 59413.0, 59413.0 0.06
AXB19b/PgnJ m 82195.0 756.0   2   534.0 0.0092 81660.0, 82729.0 1.23
AXB19/PgnJ m 65333.0 0.0   1   0.0 0.0 65333.0, 65333.0 0.36
AXB1/PgnJ m 151974.0 0.0   1   0.0 0.0 151974.0, 151974.0 4.79
AXB23/PgnJ m 68663.0 0.0   1   0.0 0.0 68663.0, 68663.0 0.53
AXB24/PgnJ m 31263.0 4745.0   2   3355.0 0.152 27908.0, 34618.0 -1.38
AXB2/PgnJ m 59346.0 0.0   1   0.0 0.0 59346.0, 59346.0 0.06
AXB4/PgnJ m 94113.0 0.0   1   0.0 0.0 94113.0, 94113.0 1.83
AXB5/PgnJ m 36051.0 0.0   1   0.0 0.0 36051.0, 36051.0 -1.13
AXB6/PgnJ m 55228.0 0.0   1   0.0 0.0 55228.0, 55228.0 -0.15
AXB8/PgnJ m 35513.0 0.0   1   0.0 0.0 35513.0, 35513.0 -1.16
BALB/cJ m 44074.0 3128.0   3 1806.0 0.071 40723.0, 46917.0 -0.72
BTBR T+ Itpr3tf/J m 81998.0 0.0   1   0.0 0.0 81998.0, 81998.0 1.22
BUB/BnJ m 65699.0 0.0   1   0.0 0.0 65699.0, 65699.0 0.38
BXA11/PgnJ m 62560.0 0.0   1   0.0 0.0 62560.0, 62560.0 0.22
BXA12/PgnJ m 31674.0 0.0   1   0.0 0.0 31674.0, 31674.0 -1.36
BXA13/PgnJ m 44685.0 0.0   1   0.0 0.0 44685.0, 44685.0 -0.69
BXA14/PgnJ m 46388.0 0.0   1   0.0 0.0 46388.0, 46388.0 -0.6
BXA16/PgnJ m 53649.0 10194.0   2   7209.0 0.19 46441.0, 60858.0 -0.23
BXA1/PgnJ m 47398.0 0.0   1   0.0 0.0 47398.0, 47398.0 -0.55
BXA24/PgnJ m 76221.0 0.0   1   0.0 0.0 76221.0, 76221.0 0.92
BXA25/PgnJ m 53263.0 0.0   1   0.0 0.0 53263.0, 53263.0 -0.25
BXA26/PgnJ m 31480.0 0.0   1   0.0 0.0 31480.0, 31480.0 -1.36
BXA2/PgnJ m 56854.0 0.0   1   0.0 0.0 56854.0, 56854.0 -0.07
BXA4/PgnJ m 48213.0 0.0   1   0.0 0.0 48213.0, 48213.0 -0.51
BXA7/PgnJ m 47876.0 0.0   1   0.0 0.0 47876.0, 47876.0 -0.53
BXA8/PgnJ m 32668.0 0.0   1   0.0 0.0 32668.0, 32668.0 -1.3
BXD11/TyJ m 42710.0 0.0   1   0.0 0.0 42710.0, 42710.0 -0.79
BXD12/TyJ m 73109.0 0.0   1   0.0 0.0 73109.0, 73109.0 0.76
BXD13/TyJ m 80295.0 0.0   1   0.0 0.0 80295.0, 80295.0 1.13
BXD14/TyJ m 63770.0 0.0   1   0.0 0.0 63770.0, 63770.0 0.28
BXD15/TyJ m 65995.0 0.0   1   0.0 0.0 65995.0, 65995.0 0.4
BXD18/TyJ m 41418.0 0.0   1   0.0 0.0 41418.0, 41418.0 -0.86
BXD19/TyJ m 55630.0 912.0   2   645.0 0.0164 54985.0, 56275.0 -0.13
BXD1/TyJ m 69955.0 0.0   1   0.0 0.0 69955.0, 69955.0 0.6
BXD20/TyJ m 68462.0 0.0   1   0.0 0.0 68462.0, 68462.0 0.52
BXD21/TyJ m 49257.0 0.0   1   0.0 0.0 49257.0, 49257.0 -0.46
BXD22/TyJ m 101145.0 0.0   1   0.0 0.0 101145.0, 101145.0 2.19
BXD24/TyJ m 59808.0 0.0   1   0.0 0.0 59808.0, 59808.0 0.08
BXD24/TyJ-Cep290rd16/J m 82126.0 0.0   1   0.0 0.0 82126.0, 82126.0 1.22
BXD28/TyJ m 48546.0 14336.0   2   10137.0 0.295 38409.0, 58684.0 -0.49
BXD29-Tlr4lps-2J/J m 68833.0 0.0   1   0.0 0.0 68833.0, 68833.0 0.54
BXD2/TyJ m 74814.0 0.0   1   0.0 0.0 74814.0, 74814.0 0.85
BXD32/TyJ m 48523.0 0.0   1   0.0 0.0 48523.0, 48523.0 -0.49
BXD33/TyJ m 38756.0 0.0   1   0.0 0.0 38756.0, 38756.0 -0.99
BXD34/TyJ m 26630.0 0.0   1   0.0 0.0 26630.0, 26630.0 -1.61
BXD36/TyJ m 16136.0 0.0   1   0.0 0.0 16136.0, 16136.0 -2.15
BXD38/TyJ m 30754.0 0.0   1   0.0 0.0 30754.0, 30754.0 -1.4
BXD39/TyJ m 36680.0 0.0   1   0.0 0.0 36680.0, 36680.0 -1.1
BXD40/TyJ m 77278.0 0.0   1   0.0 0.0 77278.0, 77278.0 0.97
BXD42/TyJ m 48565.0 0.0   1   0.0 0.0 48565.0, 48565.0 -0.49
BXD5/TyJ m 46243.0 0.0   1   0.0 0.0 46243.0, 46243.0 -0.61
BXD6/TyJ m 59171.0 0.0   1   0.0 0.0 59171.0, 59171.0 0.05
BXD8/TyJ m 56802.0 0.0   1   0.0 0.0 56802.0, 56802.0 -0.07
BXD9/TyJ m 54218.0 0.0   1   0.0 0.0 54218.0, 54218.0 -0.2
BXH10/TyJ m 62659.0 0.0   1   0.0 0.0 62659.0, 62659.0 0.23
BXH19/TyJ m 80903.0 0.0   1   0.0 0.0 80903.0, 80903.0 1.16
BXH20/KccJ m 75986.0 0.0   1   0.0 0.0 75986.0, 75986.0 0.91
BXH22/KccJ m 71197.0 0.0   1   0.0 0.0 71197.0, 71197.0 0.66
BXH2/TyJ m 60491.0 0.0   1   0.0 0.0 60491.0, 60491.0 0.12
BXH4/TyJ m 37463.0 19958.0   2   14112.0 0.533 23350.0, 51575.0 -1.06
BXH6/TyJ m 53942.0 0.0   1   0.0 0.0 53942.0, 53942.0 -0.22
BXH7/TyJ m 70377.0 0.0   1   0.0 0.0 70377.0, 70377.0 0.62
BXH8/TyJ m 33286.0 0.0   1   0.0 0.0 33286.0, 33286.0 -1.27
BXH9/TyJ m 51163.0 0.0   1   0.0 0.0 51163.0, 51163.0 -0.36
C3H/HeJ m 58061.0 433.0   2   306.0 0.00746 57755.0, 58368.0 -0.01
C57BL/6J m 31605.0 5843.0   5 2613.0 0.185 24130.0, 38098.0 -1.36
C57L/J m 64883.0 0.0   1   0.0 0.0 64883.0, 64883.0 0.34
C58/J m 131412.0 0.0   1   0.0 0.0 131412.0, 131412.0 3.74
CAST/EiJ m 44688.0 0.0   1   0.0 0.0 44688.0, 44688.0 -0.69
CBA/J m 55834.0 0.0   1   0.0 0.0 55834.0, 55834.0 -0.12
CE/J m 61023.0 0.0   1   0.0 0.0 61023.0, 61023.0 0.14
CXB11/HiAJ m 49203.0 5469.0   2   3867.0 0.111 45336.0, 53070.0 -0.46
CXB12/HiAJ m 49331.0 6862.0   2   4852.0 0.139 44479.0, 54183.0 -0.45
CXB13/HiAJ m 69504.0 10800.0   3 6235.0 0.155 57589.0, 78648.0 0.58
CXB1/ByJ m 43989.0 9847.0   3 5685.0 0.224 36531.0, 55151.0 -0.73
CXB2/ByJ m 56218.0 10681.0   3 6166.0 0.19 45127.0, 66434.0 -0.1
CXB3/ByJ m 56568.0 1373.0   2   971.0 0.0243 55597.0, 57539.0 -0.08
CXB4/ByJ m 44442.0 8670.0   2   6131.0 0.195 38311.0, 50573.0 -0.7
CXB6/ByJ m 49947.0 13271.0   3 7662.0 0.266 39310.0, 64818.0 -0.42
CXB7/ByJ m 68414.0 1998.0   2   1413.0 0.0292 67002.0, 69827.0 0.52
CXB8/HiAJ m 78903.0 24262.0   3 14008.0 0.307 54538.0, 103061.0 1.06
CXB9/HiAJ m 55345.0 6492.0   3 3748.0 0.117 50926.0, 62798.0 -0.15
DBA/2J m 43195.0 10614.0   4 5307.0 0.246 29185.0, 54301.0 -0.77
FVB/NJ m 73385.0 0.0   1   0.0 0.0 73385.0, 73385.0 0.78
I/LnJ m 79322.0 0.0   1   0.0 0.0 79322.0, 79322.0 1.08
KK/HlJ m 56524.0 0.0   1   0.0 0.0 56524.0, 56524.0 -0.09
LG/J m 70113.0 0.0   1   0.0 0.0 70113.0, 70113.0 0.61
LP/J m 68970.0 0.0   1   0.0 0.0 68970.0, 68970.0 0.55
MA/MyJ m 58755.0 0.0   1   0.0 0.0 58755.0, 58755.0 0.03
NOD/ShiLtJ m 84828.0 0.0   1   0.0 0.0 84828.0, 84828.0 1.36
NON/ShiLtJ m 41724.0 0.0   1   0.0 0.0 41724.0, 41724.0 -0.84
NZW/LacJ m 45623.0 0.0   1   0.0 0.0 45623.0, 45623.0 -0.64
PL/J m 42399.0 0.0   1   0.0 0.0 42399.0, 42399.0 -0.81
RIIIS/J m 60211.0 0.0   1   0.0 0.0 60211.0, 60211.0 0.1
SEA/GnJ m 66784.0 0.0   1   0.0 0.0 66784.0, 66784.0 0.44
SJL/J m 54908.0 0.0   1   0.0 0.0 54908.0, 54908.0 -0.17
SM/J m 54708.0 0.0   1   0.0 0.0 54708.0, 54708.0 -0.18
SWR/J m 86000.0 0.0   1   0.0 0.0 86000.0, 86000.0 1.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 57574.3 7450.7834 72716.1136 42432.4864
AXB19b/PgnJ m 82194.95 7450.7834 97336.7636 67053.1364
AXB24/PgnJ m 31262.7 7450.7834 46404.5136 16120.8864
BALB/cJ m 44074.1 6083.5391 56437.339 31710.861
BXA16/PgnJ m 53649.3 7450.7834 68791.1136 38507.4864
BXD19/TyJ m 55629.7 7450.7834 70771.5136 40487.8864
BXD28/TyJ m 48546.45 7450.7834 63688.2636 33404.6364
BXH4/TyJ m 37462.55 7450.7834 52604.3636 22320.7364
C3H/HeJ m 58061.2 7450.7834 73203.0136 42919.3864
C57BL/6J m 31605.12 4712.2891 41181.6437 22028.5963
CXB11/HiAJ m 49202.8 7450.7834 64344.6136 34060.9864
CXB12/HiAJ m 49330.95 7450.7834 64472.7636 34189.1364
CXB13/HiAJ m 69504.4333 6083.5391 81867.6723 57141.1943
CXB1/ByJ m 43988.8 6083.5391 56352.039 31625.561
CXB2/ByJ m 56217.8667 6083.5391 68581.1057 43854.6277
CXB3/ByJ m 56568.1 7450.7834 71709.9136 41426.2864
CXB4/ByJ m 44441.95 7450.7834 59583.7636 29300.1364
CXB6/ByJ m 49946.5333 6083.5391 62309.7723 37583.2943
CXB7/ByJ m 68414.15 7450.7834 83555.9636 53272.3364
CXB8/HiAJ m 78902.5667 6083.5391 91265.8057 66539.3277
CXB9/HiAJ m 55344.6 6083.5391 67707.839 42981.361
DBA/2J m 43194.525 5268.4994 53901.404 32487.646




  GWAS USING LINEAR MIXED MODELS

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