Project measure / variable:   HMDPpheno10   thymine

ID, description, units MPD:50517   thymine   thymine (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno10 - thymine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means58204   None
Median of the strain means56046   None
SD of the strain means± 19578
Coefficient of variation (CV)0.336
Min–max range of strain means16136   –   151974   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 9983030303.8871 475382395.4232 4.2816 0.0001
Residuals 34 3774963732.0922 111028345.0615


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 33921.0 0.0   1   0.0 0.0 33921.0, 33921.0 -1.24
A/J m 57574.0 11034.0   2   7802.0 0.192 49772.0, 65377.0 -0.03
AKR/J m 55874.0 0.0   1   0.0 0.0 55874.0, 55874.0 -0.12
AXB10/PgnJ m 47608.0 0.0   1   0.0 0.0 47608.0, 47608.0 -0.54
AXB12/PgnJ m 54261.0 0.0   1   0.0 0.0 54261.0, 54261.0 -0.2
AXB13/PgnJ m 64876.0 0.0   1   0.0 0.0 64876.0, 64876.0 0.34
AXB15/PgnJ m 51775.0 0.0   1   0.0 0.0 51775.0, 51775.0 -0.33
AXB19a/PgnJ m 59413.0 0.0   1   0.0 0.0 59413.0, 59413.0 0.06
AXB19b/PgnJ m 82195.0 756.0   2   534.0 0.0092 81660.0, 82729.0 1.23
AXB19/PgnJ m 65333.0 0.0   1   0.0 0.0 65333.0, 65333.0 0.36
AXB1/PgnJ m 151974.0 0.0   1   0.0 0.0 151974.0, 151974.0 4.79
AXB23/PgnJ m 68663.0 0.0   1   0.0 0.0 68663.0, 68663.0 0.53
AXB24/PgnJ m 31263.0 4745.0   2   3355.0 0.152 27908.0, 34618.0 -1.38
AXB2/PgnJ m 59346.0 0.0   1   0.0 0.0 59346.0, 59346.0 0.06
AXB4/PgnJ m 94113.0 0.0   1   0.0 0.0 94113.0, 94113.0 1.83
AXB5/PgnJ m 36051.0 0.0   1   0.0 0.0 36051.0, 36051.0 -1.13
AXB6/PgnJ m 55228.0 0.0   1   0.0 0.0 55228.0, 55228.0 -0.15
AXB8/PgnJ m 35513.0 0.0   1   0.0 0.0 35513.0, 35513.0 -1.16
BALB/cJ m 44074.0 3128.0   3 1806.0 0.071 40723.0, 46917.0 -0.72
BTBR T+ Itpr3tf/J m 81998.0 0.0   1   0.0 0.0 81998.0, 81998.0 1.22
BUB/BnJ m 65699.0 0.0   1   0.0 0.0 65699.0, 65699.0 0.38
BXA11/PgnJ m 62560.0 0.0   1   0.0 0.0 62560.0, 62560.0 0.22
BXA12/PgnJ m 31674.0 0.0   1   0.0 0.0 31674.0, 31674.0 -1.36
BXA13/PgnJ m 44685.0 0.0   1   0.0 0.0 44685.0, 44685.0 -0.69
BXA14/PgnJ m 46388.0 0.0   1   0.0 0.0 46388.0, 46388.0 -0.6
BXA16/PgnJ m 53649.0 10194.0   2   7209.0 0.19 46441.0, 60858.0 -0.23
BXA1/PgnJ m 47398.0 0.0   1   0.0 0.0 47398.0, 47398.0 -0.55
BXA24/PgnJ m 76221.0 0.0   1   0.0 0.0 76221.0, 76221.0 0.92
BXA25/PgnJ m 53263.0 0.0   1   0.0 0.0 53263.0, 53263.0 -0.25
BXA26/PgnJ m 31480.0 0.0   1   0.0 0.0 31480.0, 31480.0 -1.36
BXA2/PgnJ m 56854.0 0.0   1   0.0 0.0 56854.0, 56854.0 -0.07
BXA4/PgnJ m 48213.0 0.0   1   0.0 0.0 48213.0, 48213.0 -0.51
BXA7/PgnJ m 47876.0 0.0   1   0.0 0.0 47876.0, 47876.0 -0.53
BXA8/PgnJ m 32668.0 0.0   1   0.0 0.0 32668.0, 32668.0 -1.3
BXD11/TyJ m 42710.0 0.0   1   0.0 0.0 42710.0, 42710.0 -0.79
BXD12/TyJ m 73109.0 0.0   1   0.0 0.0 73109.0, 73109.0 0.76
BXD13/TyJ m 80295.0 0.0   1   0.0 0.0 80295.0, 80295.0 1.13
BXD14/TyJ m 63770.0 0.0   1   0.0 0.0 63770.0, 63770.0 0.28
BXD15/TyJ m 65995.0 0.0   1   0.0 0.0 65995.0, 65995.0 0.4
BXD18/TyJ m 41418.0 0.0   1   0.0 0.0 41418.0, 41418.0 -0.86
BXD19/TyJ m 55630.0 912.0   2   645.0 0.0164 54985.0, 56275.0 -0.13
BXD1/TyJ m 69955.0 0.0   1   0.0 0.0 69955.0, 69955.0 0.6
BXD20/TyJ m 68462.0 0.0   1   0.0 0.0 68462.0, 68462.0 0.52
BXD21/TyJ m 49257.0 0.0   1   0.0 0.0 49257.0, 49257.0 -0.46
BXD22/TyJ m 101145.0 0.0   1   0.0 0.0 101145.0, 101145.0 2.19
BXD24/TyJ m 59808.0 0.0   1   0.0 0.0 59808.0, 59808.0 0.08
BXD24/TyJ-Cep290rd16/J m 82126.0 0.0   1   0.0 0.0 82126.0, 82126.0 1.22
BXD28/TyJ m 48546.0 14336.0   2   10137.0 0.295 38409.0, 58684.0 -0.49
BXD29-Tlr4lps-2J/J m 68833.0 0.0   1   0.0 0.0 68833.0, 68833.0 0.54
BXD2/TyJ m 74814.0 0.0   1   0.0 0.0 74814.0, 74814.0 0.85
BXD32/TyJ m 48523.0 0.0   1   0.0 0.0 48523.0, 48523.0 -0.49
BXD33/TyJ m 38756.0 0.0   1   0.0 0.0 38756.0, 38756.0 -0.99
BXD34/TyJ m 26630.0 0.0   1   0.0 0.0 26630.0, 26630.0 -1.61
BXD36/TyJ m 16136.0 0.0   1   0.0 0.0 16136.0, 16136.0 -2.15
BXD38/TyJ m 30754.0 0.0   1   0.0 0.0 30754.0, 30754.0 -1.4
BXD39/TyJ m 36680.0 0.0   1   0.0 0.0 36680.0, 36680.0 -1.1
BXD40/TyJ m 77278.0 0.0   1   0.0 0.0 77278.0, 77278.0 0.97
BXD42/TyJ m 48565.0 0.0   1   0.0 0.0 48565.0, 48565.0 -0.49
BXD5/TyJ m 46243.0 0.0   1   0.0 0.0 46243.0, 46243.0 -0.61
BXD6/TyJ m 59171.0 0.0   1   0.0 0.0 59171.0, 59171.0 0.05
BXD8/TyJ m 56802.0 0.0   1   0.0 0.0 56802.0, 56802.0 -0.07
BXD9/TyJ m 54218.0 0.0   1   0.0 0.0 54218.0, 54218.0 -0.2
BXH10/TyJ m 62659.0 0.0   1   0.0 0.0 62659.0, 62659.0 0.23
BXH19/TyJ m 80903.0 0.0   1   0.0 0.0 80903.0, 80903.0 1.16
BXH20/KccJ m 75986.0 0.0   1   0.0 0.0 75986.0, 75986.0 0.91
BXH22/KccJ m 71197.0 0.0   1   0.0 0.0 71197.0, 71197.0 0.66
BXH2/TyJ m 60491.0 0.0   1   0.0 0.0 60491.0, 60491.0 0.12
BXH4/TyJ m 37463.0 19958.0   2   14112.0 0.533 23350.0, 51575.0 -1.06
BXH6/TyJ m 53942.0 0.0   1   0.0 0.0 53942.0, 53942.0 -0.22
BXH7/TyJ m 70377.0 0.0   1   0.0 0.0 70377.0, 70377.0 0.62
BXH8/TyJ m 33286.0 0.0   1   0.0 0.0 33286.0, 33286.0 -1.27
BXH9/TyJ m 51163.0 0.0   1   0.0 0.0 51163.0, 51163.0 -0.36
C3H/HeJ m 58061.0 433.0   2   306.0 0.00746 57755.0, 58368.0 -0.01
C57BL/6J m 31605.0 5843.0   5 2613.0 0.185 24130.0, 38098.0 -1.36
C57L/J m 64883.0 0.0   1   0.0 0.0 64883.0, 64883.0 0.34
C58/J m 131412.0 0.0   1   0.0 0.0 131412.0, 131412.0 3.74
CAST/EiJ m 44688.0 0.0   1   0.0 0.0 44688.0, 44688.0 -0.69
CBA/J m 55834.0 0.0   1   0.0 0.0 55834.0, 55834.0 -0.12
CE/J m 61023.0 0.0   1   0.0 0.0 61023.0, 61023.0 0.14
CXB11/HiAJ m 49203.0 5469.0   2   3867.0 0.111 45336.0, 53070.0 -0.46
CXB12/HiAJ m 49331.0 6862.0   2   4852.0 0.139 44479.0, 54183.0 -0.45
CXB13/HiAJ m 69504.0 10800.0   3 6235.0 0.155 57589.0, 78648.0 0.58
CXB1/ByJ m 43989.0 9847.0   3 5685.0 0.224 36531.0, 55151.0 -0.73
CXB2/ByJ m 56218.0 10681.0   3 6166.0 0.19 45127.0, 66434.0 -0.1
CXB3/ByJ m 56568.0 1373.0   2   971.0 0.0243 55597.0, 57539.0 -0.08
CXB4/ByJ m 44442.0 8670.0   2   6131.0 0.195 38311.0, 50573.0 -0.7
CXB6/ByJ m 49947.0 13271.0   3 7662.0 0.266 39310.0, 64818.0 -0.42
CXB7/ByJ m 68414.0 1998.0   2   1413.0 0.0292 67002.0, 69827.0 0.52
CXB8/HiAJ m 78903.0 24262.0   3 14008.0 0.307 54538.0, 103061.0 1.06
CXB9/HiAJ m 55345.0 6492.0   3 3748.0 0.117 50926.0, 62798.0 -0.15
DBA/2J m 43195.0 10614.0   4 5307.0 0.246 29185.0, 54301.0 -0.77
FVB/NJ m 73385.0 0.0   1   0.0 0.0 73385.0, 73385.0 0.78
I/LnJ m 79322.0 0.0   1   0.0 0.0 79322.0, 79322.0 1.08
KK/HlJ m 56524.0 0.0   1   0.0 0.0 56524.0, 56524.0 -0.09
LG/J m 70113.0 0.0   1   0.0 0.0 70113.0, 70113.0 0.61
LP/J m 68970.0 0.0   1   0.0 0.0 68970.0, 68970.0 0.55
MA/MyJ m 58755.0 0.0   1   0.0 0.0 58755.0, 58755.0 0.03
NOD/ShiLtJ m 84828.0 0.0   1   0.0 0.0 84828.0, 84828.0 1.36
NON/ShiLtJ m 41724.0 0.0   1   0.0 0.0 41724.0, 41724.0 -0.84
NZW/LacJ m 45623.0 0.0   1   0.0 0.0 45623.0, 45623.0 -0.64
PL/J m 42399.0 0.0   1   0.0 0.0 42399.0, 42399.0 -0.81
RIIIS/J m 60211.0 0.0   1   0.0 0.0 60211.0, 60211.0 0.1
SEA/GnJ m 66784.0 0.0   1   0.0 0.0 66784.0, 66784.0 0.44
SJL/J m 54908.0 0.0   1   0.0 0.0 54908.0, 54908.0 -0.17
SM/J m 54708.0 0.0   1   0.0 0.0 54708.0, 54708.0 -0.18
SWR/J m 86000.0 0.0   1   0.0 0.0 86000.0, 86000.0 1.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 57574.3 7450.7834 72716.1136 42432.4864
AXB19b/PgnJ m 82194.95 7450.7834 97336.7636 67053.1364
AXB24/PgnJ m 31262.7 7450.7834 46404.5136 16120.8864
BALB/cJ m 44074.1 6083.5391 56437.339 31710.861
BXA16/PgnJ m 53649.3 7450.7834 68791.1136 38507.4864
BXD19/TyJ m 55629.7 7450.7834 70771.5136 40487.8864
BXD28/TyJ m 48546.45 7450.7834 63688.2636 33404.6364
BXH4/TyJ m 37462.55 7450.7834 52604.3636 22320.7364
C3H/HeJ m 58061.2 7450.7834 73203.0136 42919.3864
C57BL/6J m 31605.12 4712.2891 41181.6437 22028.5963
CXB11/HiAJ m 49202.8 7450.7834 64344.6136 34060.9864
CXB12/HiAJ m 49330.95 7450.7834 64472.7636 34189.1364
CXB13/HiAJ m 69504.4333 6083.5391 81867.6723 57141.1943
CXB1/ByJ m 43988.8 6083.5391 56352.039 31625.561
CXB2/ByJ m 56217.8667 6083.5391 68581.1057 43854.6277
CXB3/ByJ m 56568.1 7450.7834 71709.9136 41426.2864
CXB4/ByJ m 44441.95 7450.7834 59583.7636 29300.1364
CXB6/ByJ m 49946.5333 6083.5391 62309.7723 37583.2943
CXB7/ByJ m 68414.15 7450.7834 83555.9636 53272.3364
CXB8/HiAJ m 78902.5667 6083.5391 91265.8057 66539.3277
CXB9/HiAJ m 55344.6 6083.5391 67707.839 42981.361
DBA/2J m 43194.525 5268.4994 53901.404 32487.646




  GWAS USING LINEAR MIXED MODELS