Project measure / variable:   HMDPpheno10   CMP_5

ID, description, units MPD:50515   CMP_5   liver cytidine 5'-monophosphate (5'-CMP) (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno10 - liver cytidine 5'-monophosphate (5'-CMP) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means232301   None
Median of the strain means210532   None
SD of the strain means± 95746
Coefficient of variation (CV)0.412
Min–max range of strain means134069   –   999446   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 103399876948.846 4923803664.2307 3.8136 0.0003
Residuals 34 43897871439.0199 1291113865.8535


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 256956.0 0.0   1   0.0 0.0 256956.0, 256956.0 0.26
A/J m 233768.0 51620.0   2   36501.0 0.221 197267.0, 270269.0 0.02
AKR/J m 257893.0 0.0   1   0.0 0.0 257893.0, 257893.0 0.27
AXB10/PgnJ m 246788.0 0.0   1   0.0 0.0 246788.0, 246788.0 0.15
AXB12/PgnJ m 181512.0 0.0   1   0.0 0.0 181512.0, 181512.0 -0.53
AXB13/PgnJ m 285850.0 0.0   1   0.0 0.0 285850.0, 285850.0 0.56
AXB15/PgnJ m 263586.0 0.0   1   0.0 0.0 263586.0, 263586.0 0.33
AXB19a/PgnJ m 282459.0 0.0   1   0.0 0.0 282459.0, 282459.0 0.52
AXB19b/PgnJ m 278760.0 51652.0   2   36524.0 0.185 242237.0, 315284.0 0.49
AXB19/PgnJ m 209755.0 0.0   1   0.0 0.0 209755.0, 209755.0 -0.24
AXB1/PgnJ m 420366.0 0.0   1   0.0 0.0 420366.0, 420366.0 1.96
AXB23/PgnJ m 218070.0 0.0   1   0.0 0.0 218070.0, 218070.0 -0.15
AXB24/PgnJ m 134069.0 28124.0   2   19887.0 0.21 114183.0, 153956.0 -1.03
AXB2/PgnJ m 363528.0 0.0   1   0.0 0.0 363528.0, 363528.0 1.37
AXB4/PgnJ m 222307.0 0.0   1   0.0 0.0 222307.0, 222307.0 -0.1
AXB5/PgnJ m 175682.0 0.0   1   0.0 0.0 175682.0, 175682.0 -0.59
AXB6/PgnJ m 226843.0 0.0   1   0.0 0.0 226843.0, 226843.0 -0.06
AXB8/PgnJ m 276004.0 0.0   1   0.0 0.0 276004.0, 276004.0 0.46
BALB/cJ m 269443.0 10571.0   3 6103.0 0.0392 257455.0, 277427.0 0.39
BTBR T+ Itpr3tf/J m 205567.0 0.0   1   0.0 0.0 205567.0, 205567.0 -0.28
BUB/BnJ m 358540.0 0.0   1   0.0 0.0 358540.0, 358540.0 1.32
BXA11/PgnJ m 142886.0 0.0   1   0.0 0.0 142886.0, 142886.0 -0.93
BXA12/PgnJ m 181630.0 0.0   1   0.0 0.0 181630.0, 181630.0 -0.53
BXA13/PgnJ m 283387.0 0.0   1   0.0 0.0 283387.0, 283387.0 0.53
BXA14/PgnJ m 191435.0 0.0   1   0.0 0.0 191435.0, 191435.0 -0.43
BXA16/PgnJ m 190363.0 16761.0   2   11852.0 0.088 178511.0, 202215.0 -0.44
BXA1/PgnJ m 177464.0 0.0   1   0.0 0.0 177464.0, 177464.0 -0.57
BXA24/PgnJ m 216182.0 0.0   1   0.0 0.0 216182.0, 216182.0 -0.17
BXA25/PgnJ m 219871.0 0.0   1   0.0 0.0 219871.0, 219871.0 -0.13
BXA26/PgnJ m 206988.0 0.0   1   0.0 0.0 206988.0, 206988.0 -0.26
BXA2/PgnJ m 184742.0 0.0   1   0.0 0.0 184742.0, 184742.0 -0.5
BXA4/PgnJ m 208050.0 0.0   1   0.0 0.0 208050.0, 208050.0 -0.25
BXA7/PgnJ m 191651.0 0.0   1   0.0 0.0 191651.0, 191651.0 -0.42
BXA8/PgnJ m 224227.0 0.0   1   0.0 0.0 224227.0, 224227.0 -0.08
BXD11/TyJ m 212422.0 0.0   1   0.0 0.0 212422.0, 212422.0 -0.21
BXD12/TyJ m 254537.0 0.0   1   0.0 0.0 254537.0, 254537.0 0.23
BXD13/TyJ m 187368.0 0.0   1   0.0 0.0 187368.0, 187368.0 -0.47
BXD14/TyJ m 283632.0 0.0   1   0.0 0.0 283632.0, 283632.0 0.54
BXD15/TyJ m 224252.0 0.0   1   0.0 0.0 224252.0, 224252.0 -0.08
BXD18/TyJ m 191318.0 0.0   1   0.0 0.0 191318.0, 191318.0 -0.43
BXD19/TyJ m 243953.0 32850.0   2   23229.0 0.135 220724.0, 267182.0 0.12
BXD1/TyJ m 148661.0 0.0   1   0.0 0.0 148661.0, 148661.0 -0.87
BXD20/TyJ m 188677.0 0.0   1   0.0 0.0 188677.0, 188677.0 -0.46
BXD21/TyJ m 178932.0 0.0   1   0.0 0.0 178932.0, 178932.0 -0.56
BXD22/TyJ m 168650.0 0.0   1   0.0 0.0 168650.0, 168650.0 -0.66
BXD24/TyJ m 176540.0 0.0   1   0.0 0.0 176540.0, 176540.0 -0.58
BXD24/TyJ-Cep290rd16/J m 230119.0 0.0   1   0.0 0.0 230119.0, 230119.0 -0.02
BXD28/TyJ m 164802.0 30461.0   2   21539.0 0.185 143263.0, 186342.0 -0.7
BXD29-Tlr4lps-2J/J m 207802.0 0.0   1   0.0 0.0 207802.0, 207802.0 -0.26
BXD2/TyJ m 211308.0 0.0   1   0.0 0.0 211308.0, 211308.0 -0.22
BXD32/TyJ m 211457.0 0.0   1   0.0 0.0 211457.0, 211457.0 -0.22
BXD33/TyJ m 166700.0 0.0   1   0.0 0.0 166700.0, 166700.0 -0.69
BXD34/TyJ m 184356.0 0.0   1   0.0 0.0 184356.0, 184356.0 -0.5
BXD36/TyJ m 209500.0 0.0   1   0.0 0.0 209500.0, 209500.0 -0.24
BXD38/TyJ m 154174.0 0.0   1   0.0 0.0 154174.0, 154174.0 -0.82
BXD39/TyJ m 153275.0 0.0   1   0.0 0.0 153275.0, 153275.0 -0.83
BXD40/TyJ m 199999.0 0.0   1   0.0 0.0 199999.0, 199999.0 -0.34
BXD42/TyJ m 198287.0 0.0   1   0.0 0.0 198287.0, 198287.0 -0.36
BXD5/TyJ m 197469.0 0.0   1   0.0 0.0 197469.0, 197469.0 -0.36
BXD6/TyJ m 208438.0 0.0   1   0.0 0.0 208438.0, 208438.0 -0.25
BXD8/TyJ m 170779.0 0.0   1   0.0 0.0 170779.0, 170779.0 -0.64
BXD9/TyJ m 188572.0 0.0   1   0.0 0.0 188572.0, 188572.0 -0.46
BXH10/TyJ m 183832.0 0.0   1   0.0 0.0 183832.0, 183832.0 -0.51
BXH19/TyJ m 248902.0 0.0   1   0.0 0.0 248902.0, 248902.0 0.17
BXH20/KccJ m 207514.0 0.0   1   0.0 0.0 207514.0, 207514.0 -0.26
BXH22/KccJ m 212348.0 0.0   1   0.0 0.0 212348.0, 212348.0 -0.21
BXH2/TyJ m 154871.0 0.0   1   0.0 0.0 154871.0, 154871.0 -0.81
BXH4/TyJ m 206945.0 2462.0   2   1741.0 0.0119 205205.0, 208686.0 -0.26
BXH6/TyJ m 220783.0 0.0   1   0.0 0.0 220783.0, 220783.0 -0.12
BXH7/TyJ m 164984.0 0.0   1   0.0 0.0 164984.0, 164984.0 -0.7
BXH8/TyJ m 227414.0 0.0   1   0.0 0.0 227414.0, 227414.0 -0.05
BXH9/TyJ m 182208.0 0.0   1   0.0 0.0 182208.0, 182208.0 -0.52
C3H/HeJ m 319063.0 12617.0   2   8921.0 0.0395 310142.0, 327984.0 0.91
C57BL/6J m 246673.0 34875.0   5 15597.0 0.141 209192.0, 284816.0 0.15
C57L/J m 317565.0 0.0   1   0.0 0.0 317565.0, 317565.0 0.89
C58/J m 999446.0 0.0   1   0.0 0.0 999446.0, 999446.0 8.01
CAST/EiJ m 205395.0 0.0   1   0.0 0.0 205395.0, 205395.0 -0.28
CBA/J m 257891.0 0.0   1   0.0 0.0 257891.0, 257891.0 0.27
CE/J m 298447.0 0.0   1   0.0 0.0 298447.0, 298447.0 0.69
CXB11/HiAJ m 205302.0 744.0   2   526.0 0.00362 204776.0, 205828.0 -0.28
CXB12/HiAJ m 144567.0 12587.0   2   8900.0 0.0871 135666.0, 153467.0 -0.92
CXB13/HiAJ m 244423.0 107375.0   3 61993.0 0.439 159254.0, 365040.0 0.13
CXB1/ByJ m 197537.0 27352.0   3 15792.0 0.138 166968.0, 219698.0 -0.36
CXB2/ByJ m 207400.0 32946.0   3 19022.0 0.159 182207.0, 244684.0 -0.26
CXB3/ByJ m 170079.0 26019.0   2   18398.0 0.153 151680.0, 188477.0 -0.65
CXB4/ByJ m 143399.0 20100.0   2   14213.0 0.14 129186.0, 157612.0 -0.93
CXB6/ByJ m 196252.0 16926.0   3 9772.0 0.0862 178193.0, 211754.0 -0.38
CXB7/ByJ m 185290.0 3230.0   2   2284.0 0.0174 183006.0, 187574.0 -0.49
CXB8/HiAJ m 212505.0 15276.0   3 8819.0 0.0719 202613.0, 230098.0 -0.21
CXB9/HiAJ m 171612.0 20127.0   3 11621.0 0.117 149303.0, 188409.0 -0.63
DBA/2J m 187195.0 11634.0   4 5817.0 0.0621 173211.0, 198499.0 -0.47
FVB/NJ m 281090.0 0.0   1   0.0 0.0 281090.0, 281090.0 0.51
I/LnJ m 202718.0 0.0   1   0.0 0.0 202718.0, 202718.0 -0.31
KK/HlJ m 234286.0 0.0   1   0.0 0.0 234286.0, 234286.0 0.02
LG/J m 364028.0 0.0   1   0.0 0.0 364028.0, 364028.0 1.38
LP/J m 300141.0 0.0   1   0.0 0.0 300141.0, 300141.0 0.71
MA/MyJ m 335459.0 0.0   1   0.0 0.0 335459.0, 335459.0 1.08
NOD/ShiLtJ m 239184.0 0.0   1   0.0 0.0 239184.0, 239184.0 0.07
NON/ShiLtJ m 229246.0 0.0   1   0.0 0.0 229246.0, 229246.0 -0.03
NZW/LacJ m 235836.0 0.0   1   0.0 0.0 235836.0, 235836.0 0.04
PL/J m 264063.0 0.0   1   0.0 0.0 264063.0, 264063.0 0.33
RIIIS/J m 274491.0 0.0   1   0.0 0.0 274491.0, 274491.0 0.44
SEA/GnJ m 259658.0 0.0   1   0.0 0.0 259658.0, 259658.0 0.29
SJL/J m 190502.0 0.0   1   0.0 0.0 190502.0, 190502.0 -0.44
SM/J m 505108.0 0.0   1   0.0 0.0 505108.0, 505108.0 2.85
SWR/J m 285615.0 0.0   1   0.0 0.0 285615.0, 285615.0 0.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 233768.3 25407.8124 285403.1873 182133.4127
AXB19b/PgnJ m 278760.5 25407.8124 330395.3873 227125.6127
AXB24/PgnJ m 134069.35 25407.8124 185704.2373 82434.4627
BALB/cJ m 269443.2 20745.392 311602.909 227283.491
BXA16/PgnJ m 190362.8 25407.8124 241997.6873 138727.9127
BXD19/TyJ m 243953.15 25407.8124 295588.0373 192318.2627
BXD28/TyJ m 164802.25 25407.8124 216437.1373 113167.3627
BXH4/TyJ m 206945.4 25407.8124 258580.2873 155310.5127
C3H/HeJ m 319062.9 25407.8124 370697.7873 267428.0127
C57BL/6J m 246673.4 16069.3115 279330.1701 214016.6299
CXB11/HiAJ m 205302.3 25407.8124 256937.1873 153667.4127
CXB12/HiAJ m 144566.65 25407.8124 196201.5373 92931.7627
CXB13/HiAJ m 244423.0333 20745.392 286582.7423 202263.3244
CXB1/ByJ m 197536.8333 20745.392 239696.5423 155377.1244
CXB2/ByJ m 207400.4333 20745.392 249560.1423 165240.7244
CXB3/ByJ m 170078.55 25407.8124 221713.4373 118443.6627
CXB4/ByJ m 143399.3 25407.8124 195034.1873 91764.4127
CXB6/ByJ m 196252.3667 20745.392 238412.0756 154092.6577
CXB7/ByJ m 185290.45 25407.8124 236925.3373 133655.5627
CXB8/HiAJ m 212504.6333 20745.392 254664.3423 170344.9244
CXB9/HiAJ m 171611.7333 20745.392 213771.4423 129452.0244
DBA/2J m 187194.65 17966.0365 223706.029 150683.271




  GWAS USING LINEAR MIXED MODELS