Project measure / variable:   HMDPpheno10   AMP_3

ID, description, units MPD:50510   AMP_3   liver adenosine 3'-monophosphate (3'-AMP) (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno10 - liver adenosine 3'-monophosphate (3'-AMP) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means308745   None
Median of the strain means288190   None
SD of the strain means± 85644
Coefficient of variation (CV)0.277
Min–max range of strain means168756   –   588368   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 284521447151.199 13548640340.5333 3.6418 0.0004
Residuals 34 126490033074.13 3720295090.4156


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 274657.0 0.0   1   0.0 0.0 274657.0, 274657.0 -0.4
A/J m 496444.0 155183.0   2   109731.0 0.313 386713.0, 606175.0 2.19
AKR/J m 277847.0 0.0   1   0.0 0.0 277847.0, 277847.0 -0.36
AXB10/PgnJ m 237348.0 0.0   1   0.0 0.0 237348.0, 237348.0 -0.83
AXB12/PgnJ m 262408.0 0.0   1   0.0 0.0 262408.0, 262408.0 -0.54
AXB13/PgnJ m 402296.0 0.0   1   0.0 0.0 402296.0, 402296.0 1.09
AXB15/PgnJ m 287969.0 0.0   1   0.0 0.0 287969.0, 287969.0 -0.24
AXB19a/PgnJ m 245422.0 0.0   1   0.0 0.0 245422.0, 245422.0 -0.74
AXB19b/PgnJ m 403178.0 66716.0   2   47175.0 0.165 356003.0, 450353.0 1.1
AXB19/PgnJ m 285933.0 0.0   1   0.0 0.0 285933.0, 285933.0 -0.27
AXB1/PgnJ m 306188.0 0.0   1   0.0 0.0 306188.0, 306188.0 -0.03
AXB23/PgnJ m 334234.0 0.0   1   0.0 0.0 334234.0, 334234.0 0.3
AXB24/PgnJ m 322750.0 80907.0   2   57210.0 0.251 265540.0, 379960.0 0.16
AXB2/PgnJ m 523274.0 0.0   1   0.0 0.0 523274.0, 523274.0 2.5
AXB4/PgnJ m 367236.0 0.0   1   0.0 0.0 367236.0, 367236.0 0.68
AXB5/PgnJ m 176339.0 0.0   1   0.0 0.0 176339.0, 176339.0 -1.55
AXB6/PgnJ m 255377.0 0.0   1   0.0 0.0 255377.0, 255377.0 -0.62
AXB8/PgnJ m 214172.0 0.0   1   0.0 0.0 214172.0, 214172.0 -1.1
BALB/cJ m 368485.0 50392.0   3 29094.0 0.137 316203.0, 416746.0 0.7
BTBR T+ Itpr3tf/J m 303854.0 0.0   1   0.0 0.0 303854.0, 303854.0 -0.06
BUB/BnJ m 232200.0 0.0   1   0.0 0.0 232200.0, 232200.0 -0.89
BXA11/PgnJ m 541188.0 0.0   1   0.0 0.0 541188.0, 541188.0 2.71
BXA12/PgnJ m 293608.0 0.0   1   0.0 0.0 293608.0, 293608.0 -0.18
BXA13/PgnJ m 523524.0 0.0   1   0.0 0.0 523524.0, 523524.0 2.51
BXA14/PgnJ m 237148.0 0.0   1   0.0 0.0 237148.0, 237148.0 -0.84
BXA16/PgnJ m 310874.0 32024.0   2   22645.0 0.103 288229.0, 333518.0 0.02
BXA1/PgnJ m 343023.0 0.0   1   0.0 0.0 343023.0, 343023.0 0.4
BXA24/PgnJ m 267468.0 0.0   1   0.0 0.0 267468.0, 267468.0 -0.48
BXA25/PgnJ m 418121.0 0.0   1   0.0 0.0 418121.0, 418121.0 1.28
BXA26/PgnJ m 293472.0 0.0   1   0.0 0.0 293472.0, 293472.0 -0.18
BXA2/PgnJ m 233842.0 0.0   1   0.0 0.0 233842.0, 233842.0 -0.87
BXA4/PgnJ m 404128.0 0.0   1   0.0 0.0 404128.0, 404128.0 1.11
BXA7/PgnJ m 197230.0 0.0   1   0.0 0.0 197230.0, 197230.0 -1.3
BXA8/PgnJ m 279296.0 0.0   1   0.0 0.0 279296.0, 279296.0 -0.34
BXD11/TyJ m 371156.0 0.0   1   0.0 0.0 371156.0, 371156.0 0.73
BXD12/TyJ m 229404.0 0.0   1   0.0 0.0 229404.0, 229404.0 -0.93
BXD13/TyJ m 182856.0 0.0   1   0.0 0.0 182856.0, 182856.0 -1.47
BXD14/TyJ m 264633.0 0.0   1   0.0 0.0 264633.0, 264633.0 -0.52
BXD15/TyJ m 383477.0 0.0   1   0.0 0.0 383477.0, 383477.0 0.87
BXD18/TyJ m 247855.0 0.0   1   0.0 0.0 247855.0, 247855.0 -0.71
BXD19/TyJ m 289830.0 53091.0   2   37541.0 0.183 252289.0, 327372.0 -0.22
BXD1/TyJ m 313481.0 0.0   1   0.0 0.0 313481.0, 313481.0 0.06
BXD20/TyJ m 304941.0 0.0   1   0.0 0.0 304941.0, 304941.0 -0.04
BXD21/TyJ m 314714.0 0.0   1   0.0 0.0 314714.0, 314714.0 0.07
BXD22/TyJ m 381841.0 0.0   1   0.0 0.0 381841.0, 381841.0 0.85
BXD24/TyJ m 451201.0 0.0   1   0.0 0.0 451201.0, 451201.0 1.66
BXD24/TyJ-Cep290rd16/J m 358839.0 0.0   1   0.0 0.0 358839.0, 358839.0 0.58
BXD28/TyJ m 246128.0 100629.0   2   71155.0 0.409 174972.0, 317283.0 -0.73
BXD29-Tlr4lps-2J/J m 588368.0 0.0   1   0.0 0.0 588368.0, 588368.0 3.26
BXD2/TyJ m 284540.0 0.0   1   0.0 0.0 284540.0, 284540.0 -0.28
BXD32/TyJ m 286406.0 0.0   1   0.0 0.0 286406.0, 286406.0 -0.26
BXD33/TyJ m 298552.0 0.0   1   0.0 0.0 298552.0, 298552.0 -0.12
BXD34/TyJ m 230832.0 0.0   1   0.0 0.0 230832.0, 230832.0 -0.91
BXD36/TyJ m 187574.0 0.0   1   0.0 0.0 187574.0, 187574.0 -1.41
BXD38/TyJ m 180560.0 0.0   1   0.0 0.0 180560.0, 180560.0 -1.5
BXD39/TyJ m 413359.0 0.0   1   0.0 0.0 413359.0, 413359.0 1.22
BXD40/TyJ m 171614.0 0.0   1   0.0 0.0 171614.0, 171614.0 -1.6
BXD42/TyJ m 344650.0 0.0   1   0.0 0.0 344650.0, 344650.0 0.42
BXD5/TyJ m 389518.0 0.0   1   0.0 0.0 389518.0, 389518.0 0.94
BXD6/TyJ m 270764.0 0.0   1   0.0 0.0 270764.0, 270764.0 -0.44
BXD8/TyJ m 250543.0 0.0   1   0.0 0.0 250543.0, 250543.0 -0.68
BXD9/TyJ m 286141.0 0.0   1   0.0 0.0 286141.0, 286141.0 -0.26
BXH10/TyJ m 343921.0 0.0   1   0.0 0.0 343921.0, 343921.0 0.41
BXH19/TyJ m 190589.0 0.0   1   0.0 0.0 190589.0, 190589.0 -1.38
BXH20/KccJ m 252497.0 0.0   1   0.0 0.0 252497.0, 252497.0 -0.66
BXH22/KccJ m 438954.0 0.0   1   0.0 0.0 438954.0, 438954.0 1.52
BXH2/TyJ m 277176.0 0.0   1   0.0 0.0 277176.0, 277176.0 -0.37
BXH4/TyJ m 299205.0 71309.0   2   50423.0 0.238 248782.0, 349628.0 -0.11
BXH6/TyJ m 168756.0 0.0   1   0.0 0.0 168756.0, 168756.0 -1.63
BXH7/TyJ m 274657.0 0.0   1   0.0 0.0 274657.0, 274657.0 -0.4
BXH8/TyJ m 251127.0 0.0   1   0.0 0.0 251127.0, 251127.0 -0.67
BXH9/TyJ m 328776.0 0.0   1   0.0 0.0 328776.0, 328776.0 0.23
C3H/HeJ m 371743.0 65478.0   2   46300.0 0.176 325443.0, 418043.0 0.74
C57BL/6J m 221855.0 41600.0   5 18604.0 0.188 174016.0, 270191.0 -1.01
C57L/J m 188845.0 0.0   1   0.0 0.0 188845.0, 188845.0 -1.4
C58/J m 285177.0 0.0   1   0.0 0.0 285177.0, 285177.0 -0.28
CAST/EiJ m 373549.0 0.0   1   0.0 0.0 373549.0, 373549.0 0.76
CBA/J m 250733.0 0.0   1   0.0 0.0 250733.0, 250733.0 -0.68
CE/J m 476350.0 0.0   1   0.0 0.0 476350.0, 476350.0 1.96
CXB11/HiAJ m 267686.0 15658.0   2   11072.0 0.0585 256614.0, 278759.0 -0.48
CXB12/HiAJ m 310186.0 543.0   2   384.0 0.00175 309802.0, 310570.0 0.02
CXB13/HiAJ m 305716.0 41940.0   3 24214.0 0.137 269969.0, 351885.0 -0.04
CXB1/ByJ m 260526.0 27365.0   3 15799.0 0.105 233367.0, 288093.0 -0.56
CXB2/ByJ m 316430.0 9049.0   3 5224.0 0.0286 306410.0, 324006.0 0.09
CXB3/ByJ m 291233.0 38827.0   2   27455.0 0.133 263778.0, 318687.0 -0.2
CXB4/ByJ m 288410.0 103882.0   2   73456.0 0.36 214954.0, 361866.0 -0.24
CXB6/ByJ m 236351.0 32833.0   3 18956.0 0.139 203004.0, 268644.0 -0.85
CXB7/ByJ m 283416.0 17174.0   2   12144.0 0.0606 271271.0, 295560.0 -0.3
CXB8/HiAJ m 325328.0 14643.0   3 8454.0 0.045 311143.0, 340390.0 0.19
CXB9/HiAJ m 278005.0 96005.0   3 55429.0 0.345 203316.0, 386294.0 -0.36
DBA/2J m 466757.0 75344.0   4 37672.0 0.161 367254.0, 543638.0 1.84
FVB/NJ m 274577.0 0.0   1   0.0 0.0 274577.0, 274577.0 -0.4
I/LnJ m 283214.0 0.0   1   0.0 0.0 283214.0, 283214.0 -0.3
KK/HlJ m 238407.0 0.0   1   0.0 0.0 238407.0, 238407.0 -0.82
LG/J m 299138.0 0.0   1   0.0 0.0 299138.0, 299138.0 -0.11
LP/J m 267401.0 0.0   1   0.0 0.0 267401.0, 267401.0 -0.48
MA/MyJ m 216917.0 0.0   1   0.0 0.0 216917.0, 216917.0 -1.07
NOD/ShiLtJ m 472690.0 0.0   1   0.0 0.0 472690.0, 472690.0 1.91
NON/ShiLtJ m 235004.0 0.0   1   0.0 0.0 235004.0, 235004.0 -0.86
NZW/LacJ m 262921.0 0.0   1   0.0 0.0 262921.0, 262921.0 -0.54
PL/J m 393617.0 0.0   1   0.0 0.0 393617.0, 393617.0 0.99
RIIIS/J m 280236.0 0.0   1   0.0 0.0 280236.0, 280236.0 -0.33
SEA/GnJ m 413855.0 0.0   1   0.0 0.0 413855.0, 413855.0 1.23
SJL/J m 355922.0 0.0   1   0.0 0.0 355922.0, 355922.0 0.55
SM/J m 298307.0 0.0   1   0.0 0.0 298307.0, 298307.0 -0.12
SWR/J m 366552.0 0.0   1   0.0 0.0 366552.0, 366552.0 0.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 496444.15 43129.4278 584093.6929 408794.6071
AXB19b/PgnJ m 403177.65 43129.4278 490827.1929 315528.1071
AXB24/PgnJ m 322750.5 43129.4278 410400.0429 235100.9571
BALB/cJ m 368485.4333 35215.0304 440050.9854 296919.8812
BXA16/PgnJ m 310873.65 43129.4278 398523.1929 223224.1071
BXD19/TyJ m 289830.25 43129.4278 377479.7929 202180.7071
BXD28/TyJ m 246127.5 43129.4278 333777.0429 158477.9571
BXH4/TyJ m 299205.15 43129.4278 386854.6929 211555.6071
C3H/HeJ m 371743.0 43129.4278 459392.5429 284093.4571
C57BL/6J m 221855.06 27277.4452 277289.4983 166420.6217
CXB11/HiAJ m 267686.45 43129.4278 355335.9929 180036.9071
CXB12/HiAJ m 310185.95 43129.4278 397835.4929 222536.4071
CXB13/HiAJ m 305716.3667 35215.0304 377281.9188 234150.8146
CXB1/ByJ m 260526.3333 35215.0304 332091.8854 188960.7812
CXB2/ByJ m 316430.1667 35215.0304 387995.7188 244864.6146
CXB3/ByJ m 291232.55 43129.4278 378882.0929 203583.0071
CXB4/ByJ m 288410.15 43129.4278 376059.6929 200760.6071
CXB6/ByJ m 236351.3333 35215.0304 307916.8854 164785.7812
CXB7/ByJ m 283415.55 43129.4278 371065.0929 195766.0071
CXB8/HiAJ m 325328.0 35215.0304 396893.5521 253762.4479
CXB9/HiAJ m 278004.9333 35215.0304 349570.4854 206439.3812
DBA/2J m 466757.475 30497.1109 528735.0612 404779.8888




  GWAS USING LINEAR MIXED MODELS