Project measure / variable:   HMDPpheno10   cytidine

ID, description, units MPD:50516   cytidine   cytidine (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno10 - cytidine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means792466   None
Median of the strain means609600   None
SD of the strain means± 469068
Coefficient of variation (CV)0.592
Min–max range of strain means290216   –   2451278   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 3309754528180.21 157607358484.772 14.6864 < 0.0001
Residuals 34 364870933393.625 10731498040.989


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 504402.0 0.0   1   0.0 0.0 504402.0, 504402.0 -0.61
A/J m 778927.0 192627.0   2   136208.0 0.247 642719.0, 915135.0 -0.03
AKR/J m 524801.0 0.0   1   0.0 0.0 524801.0, 524801.0 -0.57
AXB10/PgnJ m 889847.0 0.0   1   0.0 0.0 889847.0, 889847.0 0.21
AXB12/PgnJ m 923296.0 0.0   1   0.0 0.0 923296.0, 923296.0 0.28
AXB13/PgnJ m 461481.0 0.0   1   0.0 0.0 461481.0, 461481.0 -0.71
AXB15/PgnJ m 608057.0 0.0   1   0.0 0.0 608057.0, 608057.0 -0.39
AXB19a/PgnJ m 521145.0 0.0   1   0.0 0.0 521145.0, 521145.0 -0.58
AXB19b/PgnJ m 552329.0 40350.0   2   28532.0 0.0731 523797.0, 580861.0 -0.51
AXB19/PgnJ m 732325.0 0.0   1   0.0 0.0 732325.0, 732325.0 -0.13
AXB1/PgnJ m 870483.0 0.0   1   0.0 0.0 870483.0, 870483.0 0.17
AXB23/PgnJ m 887155.0 0.0   1   0.0 0.0 887155.0, 887155.0 0.2
AXB24/PgnJ m 857202.0 48034.0   2   33966.0 0.056 823237.0, 891168.0 0.14
AXB2/PgnJ m 997480.0 0.0   1   0.0 0.0 997480.0, 997480.0 0.44
AXB4/PgnJ m 567642.0 0.0   1   0.0 0.0 567642.0, 567642.0 -0.48
AXB5/PgnJ m 581157.0 0.0   1   0.0 0.0 581157.0, 581157.0 -0.45
AXB6/PgnJ m 1024437.0 0.0   1   0.0 0.0 1024437.0, 1024437.0 0.49
AXB8/PgnJ m 441782.0 0.0   1   0.0 0.0 441782.0, 441782.0 -0.75
BALB/cJ m 526549.0 119319.0   3 68889.0 0.227 389790.0, 609412.0 -0.57
BTBR T+ Itpr3tf/J m 548659.0 0.0   1   0.0 0.0 548659.0, 548659.0 -0.52
BUB/BnJ m 2307518.0 0.0   1   0.0 0.0 2307518.0, 2307518.0 3.23
BXA11/PgnJ m 777566.0 0.0   1   0.0 0.0 777566.0, 777566.0 -0.03
BXA12/PgnJ m 654575.0 0.0   1   0.0 0.0 654575.0, 654575.0 -0.29
BXA13/PgnJ m 802284.0 0.0   1   0.0 0.0 802284.0, 802284.0 0.02
BXA14/PgnJ m 653647.0 0.0   1   0.0 0.0 653647.0, 653647.0 -0.3
BXA16/PgnJ m 554141.0 248569.0   2   175765.0 0.449 378376.0, 729906.0 -0.51
BXA1/PgnJ m 450267.0 0.0   1   0.0 0.0 450267.0, 450267.0 -0.73
BXA24/PgnJ m 732518.0 0.0   1   0.0 0.0 732518.0, 732518.0 -0.13
BXA25/PgnJ m 1042899.0 0.0   1   0.0 0.0 1042899.0, 1042899.0 0.53
BXA26/PgnJ m 632973.0 0.0   1   0.0 0.0 632973.0, 632973.0 -0.34
BXA2/PgnJ m 473208.0 0.0   1   0.0 0.0 473208.0, 473208.0 -0.68
BXA4/PgnJ m 597629.0 0.0   1   0.0 0.0 597629.0, 597629.0 -0.42
BXA7/PgnJ m 603250.0 0.0   1   0.0 0.0 603250.0, 603250.0 -0.4
BXA8/PgnJ m 552507.0 0.0   1   0.0 0.0 552507.0, 552507.0 -0.51
BXD11/TyJ m 718877.0 0.0   1   0.0 0.0 718877.0, 718877.0 -0.16
BXD12/TyJ m 547508.0 0.0   1   0.0 0.0 547508.0, 547508.0 -0.52
BXD13/TyJ m 527013.0 0.0   1   0.0 0.0 527013.0, 527013.0 -0.57
BXD14/TyJ m 421436.0 0.0   1   0.0 0.0 421436.0, 421436.0 -0.79
BXD15/TyJ m 493088.0 0.0   1   0.0 0.0 493088.0, 493088.0 -0.64
BXD18/TyJ m 799698.0 0.0   1   0.0 0.0 799698.0, 799698.0 0.02
BXD19/TyJ m 620646.0 183114.0   2   129481.0 0.295 491165.0, 750127.0 -0.37
BXD1/TyJ m 411395.0 0.0   1   0.0 0.0 411395.0, 411395.0 -0.81
BXD20/TyJ m 772325.0 0.0   1   0.0 0.0 772325.0, 772325.0 -0.04
BXD21/TyJ m 538494.0 0.0   1   0.0 0.0 538494.0, 538494.0 -0.54
BXD22/TyJ m 585021.0 0.0   1   0.0 0.0 585021.0, 585021.0 -0.44
BXD24/TyJ m 639942.0 0.0   1   0.0 0.0 639942.0, 639942.0 -0.33
BXD24/TyJ-Cep290rd16/J m 829531.0 0.0   1   0.0 0.0 829531.0, 829531.0 0.08
BXD28/TyJ m 416320.0 46604.0   2   32954.0 0.112 383366.0, 449274.0 -0.8
BXD29-Tlr4lps-2J/J m 822004.0 0.0   1   0.0 0.0 822004.0, 822004.0 0.06
BXD2/TyJ m 569983.0 0.0   1   0.0 0.0 569983.0, 569983.0 -0.47
BXD32/TyJ m 529964.0 0.0   1   0.0 0.0 529964.0, 529964.0 -0.56
BXD33/TyJ m 484672.0 0.0   1   0.0 0.0 484672.0, 484672.0 -0.66
BXD34/TyJ m 466756.0 0.0   1   0.0 0.0 466756.0, 466756.0 -0.69
BXD36/TyJ m 488385.0 0.0   1   0.0 0.0 488385.0, 488385.0 -0.65
BXD38/TyJ m 627670.0 0.0   1   0.0 0.0 627670.0, 627670.0 -0.35
BXD39/TyJ m 540456.0 0.0   1   0.0 0.0 540456.0, 540456.0 -0.54
BXD40/TyJ m 711683.0 0.0   1   0.0 0.0 711683.0, 711683.0 -0.17
BXD42/TyJ m 666630.0 0.0   1   0.0 0.0 666630.0, 666630.0 -0.27
BXD5/TyJ m 501089.0 0.0   1   0.0 0.0 501089.0, 501089.0 -0.62
BXD6/TyJ m 613559.0 0.0   1   0.0 0.0 613559.0, 613559.0 -0.38
BXD8/TyJ m 453478.0 0.0   1   0.0 0.0 453478.0, 453478.0 -0.72
BXD9/TyJ m 868860.0 0.0   1   0.0 0.0 868860.0, 868860.0 0.16
BXH10/TyJ m 2369631.0 0.0   1   0.0 0.0 2369631.0, 2369631.0 3.36
BXH19/TyJ m 1023683.0 0.0   1   0.0 0.0 1023683.0, 1023683.0 0.49
BXH20/KccJ m 2431949.0 0.0   1   0.0 0.0 2431949.0, 2431949.0 3.5
BXH22/KccJ m 580366.0 0.0   1   0.0 0.0 580366.0, 580366.0 -0.45
BXH2/TyJ m 481793.0 0.0   1   0.0 0.0 481793.0, 481793.0 -0.66
BXH4/TyJ m 660042.0 22754.0   2   16089.0 0.0345 643952.0, 676131.0 -0.28
BXH6/TyJ m 1800666.0 0.0   1   0.0 0.0 1800666.0, 1800666.0 2.15
BXH7/TyJ m 1494292.0 0.0   1   0.0 0.0 1494292.0, 1494292.0 1.5
BXH8/TyJ m 540072.0 0.0   1   0.0 0.0 540072.0, 540072.0 -0.54
BXH9/TyJ m 1544566.0 0.0   1   0.0 0.0 1544566.0, 1544566.0 1.6
C3H/HeJ m 1688366.0 38734.0   2   27389.0 0.0229 1660977.0, 1715755.0 1.91
C57BL/6J m 597045.0 109411.0   5 48930.0 0.183 503182.0, 721116.0 -0.42
C57L/J m 1065724.0 0.0   1   0.0 0.0 1065724.0, 1065724.0 0.58
C58/J m 866888.0 0.0   1   0.0 0.0 866888.0, 866888.0 0.16
CAST/EiJ m 716238.0 0.0   1   0.0 0.0 716238.0, 716238.0 -0.16
CBA/J m 1603292.0 0.0   1   0.0 0.0 1603292.0, 1603292.0 1.73
CE/J m 993129.0 0.0   1   0.0 0.0 993129.0, 993129.0 0.43
CXB11/HiAJ m 415265.0 80238.0   2   56737.0 0.193 358528.0, 472002.0 -0.8
CXB12/HiAJ m 403261.0 111470.0   2   78821.0 0.276 324439.0, 482082.0 -0.83
CXB13/HiAJ m 498319.0 130102.0   3 75115.0 0.261 354425.0, 607650.0 -0.63
CXB1/ByJ m 559656.0 111487.0   3 64367.0 0.199 474376.0, 685812.0 -0.5
CXB2/ByJ m 508104.0 65473.0   3 37801.0 0.129 439113.0, 569374.0 -0.61
CXB3/ByJ m 408601.0 47144.0   2   33336.0 0.115 375265.0, 441938.0 -0.82
CXB4/ByJ m 506226.0 67698.0   2   47870.0 0.134 458356.0, 554095.0 -0.61
CXB6/ByJ m 505021.0 74332.0   3 42916.0 0.147 420921.0, 561928.0 -0.61
CXB7/ByJ m 435906.0 68740.0   2   48606.0 0.158 387300.0, 484512.0 -0.76
CXB8/HiAJ m 536278.0 101938.0   3 58854.0 0.19 458262.0, 651618.0 -0.55
CXB9/HiAJ m 290216.0 59488.0   3 34346.0 0.205 224036.0, 339243.0 -1.07
DBA/2J m 575158.0 61575.0   4 30787.0 0.107 484918.0, 623608.0 -0.46
FVB/NJ m 2451278.0 0.0   1   0.0 0.0 2451278.0, 2451278.0 3.54
I/LnJ m 2001958.0 0.0   1   0.0 0.0 2001958.0, 2001958.0 2.58
KK/HlJ m 473803.0 0.0   1   0.0 0.0 473803.0, 473803.0 -0.68
LG/J m 1106859.0 0.0   1   0.0 0.0 1106859.0, 1106859.0 0.67
LP/J m 522124.0 0.0   1   0.0 0.0 522124.0, 522124.0 -0.58
MA/MyJ m 1682532.0 0.0   1   0.0 0.0 1682532.0, 1682532.0 1.9
NOD/ShiLtJ m 445934.0 0.0   1   0.0 0.0 445934.0, 445934.0 -0.74
NON/ShiLtJ m 611144.0 0.0   1   0.0 0.0 611144.0, 611144.0 -0.39
NZW/LacJ m 1622152.0 0.0   1   0.0 0.0 1622152.0, 1622152.0 1.77
PL/J m 643159.0 0.0   1   0.0 0.0 643159.0, 643159.0 -0.32
RIIIS/J m 566418.0 0.0   1   0.0 0.0 566418.0, 566418.0 -0.48
SEA/GnJ m 687113.0 0.0   1   0.0 0.0 687113.0, 687113.0 -0.22
SJL/J m 733995.0 0.0   1   0.0 0.0 733995.0, 733995.0 -0.12
SM/J m 1611336.0 0.0   1   0.0 0.0 1611336.0, 1611336.0 1.75
SWR/J m 1441194.0 0.0   1   0.0 0.0 1441194.0, 1441194.0 1.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 778927.25 73251.2732 927791.7477 630062.7523
AXB19b/PgnJ m 552328.7 73251.2732 701193.1977 403464.2023
AXB24/PgnJ m 857202.4 73251.2732 1006066.8977 708337.9023
BALB/cJ m 526549.1333 59809.4141 648096.4867 405001.7799
BXA16/PgnJ m 554141.35 73251.2732 703005.8477 405276.8523
BXD19/TyJ m 620646.25 73251.2732 769510.7477 471781.7523
BXD28/TyJ m 416320.4 73251.2732 565184.8977 267455.9023
BXH4/TyJ m 660041.7 73251.2732 808906.1977 511177.2023
C3H/HeJ m 1688365.95 73251.2732 1837230.4477 1539501.4523
C57BL/6J m 597045.48 46328.1729 691195.6551 502895.3049
CXB11/HiAJ m 415265.2 73251.2732 564129.6977 266400.7023
CXB12/HiAJ m 403260.55 73251.2732 552125.0477 254396.0523
CXB13/HiAJ m 498318.7667 59809.4141 619866.1201 376771.4133
CXB1/ByJ m 559656.2333 59809.4141 681203.5867 438108.8799
CXB2/ByJ m 508103.8333 59809.4141 629651.1867 386556.4799
CXB3/ByJ m 408601.45 73251.2732 557465.9477 259736.9523
CXB4/ByJ m 506225.5 73251.2732 655089.9977 357361.0023
CXB6/ByJ m 505020.5667 59809.4141 626567.9201 383473.2133
CXB7/ByJ m 435906.1 73251.2732 584770.5977 287041.6023
CXB8/HiAJ m 536277.7667 59809.4141 657825.1201 414730.4133
CXB9/HiAJ m 290215.9667 59809.4141 411763.3201 168668.6133
DBA/2J m 575158.1 51796.472 680421.1958 469895.0042




  GWAS USING LINEAR MIXED MODELS