Project measure / variable:   HMDPpheno10   methyluridine

ID, description, units MPD:50520   methyluridine   5-methyluridine (ribothymidine) (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   100 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno10 - 5-methyluridine (ribothymidine) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested100 strains
Mean of the strain means6947   None
Median of the strain means6558   None
SD of the strain means± 1713
Coefficient of variation (CV)0.247
Min–max range of strain means3998   –   11877   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 70423223.6211 3521161.1811 2.0601 0.0331
Residuals 32 54695319.0872 1709228.7215


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 4842.0 0.0   1   0.0 0.0 4842.0, 4842.0 -1.23
A/J m 8296.0 2331.0   2   1648.0 0.281 6648.0, 9945.0 0.79
AKR/J m 7180.0 0.0   1   0.0 0.0 7180.0, 7180.0 0.14
AXB10/PgnJ m 6560.0 0.0   1   0.0 0.0 6560.0, 6560.0 -0.23
AXB12/PgnJ m 6086.0 0.0   1   0.0 0.0 6086.0, 6086.0 -0.5
AXB13/PgnJ m 6448.0 0.0   1   0.0 0.0 6448.0, 6448.0 -0.29
AXB15/PgnJ m 7983.0 0.0   1   0.0 0.0 7983.0, 7983.0 0.61
AXB19a/PgnJ m 9803.0 0.0   1   0.0 0.0 9803.0, 9803.0 1.67
AXB19b/PgnJ m 9137.0 915.0   2   647.0 0.1 8490.0, 9784.0 1.28
AXB19/PgnJ m 11082.0 0.0   1   0.0 0.0 11082.0, 11082.0 2.41
AXB1/PgnJ m 11877.0 0.0   1   0.0 0.0 11877.0, 11877.0 2.88
AXB23/PgnJ m 7036.0 0.0   1   0.0 0.0 7036.0, 7036.0 0.05
AXB24/PgnJ m 6045.0 707.0   2   500.0 0.117 5545.0, 6544.0 -0.53
AXB2/PgnJ m 6484.0 0.0   1   0.0 0.0 6484.0, 6484.0 -0.27
AXB4/PgnJ m 10030.0 0.0   1   0.0 0.0 10030.0, 10030.0 1.8
AXB5/PgnJ m 6102.0 0.0   1   0.0 0.0 6102.0, 6102.0 -0.49
AXB6/PgnJ m 7596.0 0.0   1   0.0 0.0 7596.0, 7596.0 0.38
AXB8/PgnJ m 6671.0 0.0   1   0.0 0.0 6671.0, 6671.0 -0.16
BALB/cJ m 6082.0 744.0   2   526.0 0.122 5556.0, 6609.0 -0.5
BTBR T+ Itpr3tf/J m 8520.0 0.0   1   0.0 0.0 8520.0, 8520.0 0.92
BUB/BnJ m 5350.0 0.0   1   0.0 0.0 5350.0, 5350.0 -0.93
BXA11/PgnJ m 6392.0 0.0   1   0.0 0.0 6392.0, 6392.0 -0.32
BXA12/PgnJ m 4584.0 0.0   1   0.0 0.0 4584.0, 4584.0 -1.38
BXA13/PgnJ m 7018.0 0.0   1   0.0 0.0 7018.0, 7018.0 0.04
BXA14/PgnJ m 7374.0 0.0   1   0.0 0.0 7374.0, 7374.0 0.25
BXA16/PgnJ m 6816.0 680.0   2   481.0 0.0998 6336.0, 7297.0 -0.08
BXA1/PgnJ m 6712.0 0.0   1   0.0 0.0 6712.0, 6712.0 -0.14
BXA24/PgnJ m 7220.0 0.0   1   0.0 0.0 7220.0, 7220.0 0.16
BXA25/PgnJ m 5335.0 0.0   1   0.0 0.0 5335.0, 5335.0 -0.94
BXA26/PgnJ m 4847.0 0.0   1   0.0 0.0 4847.0, 4847.0 -1.23
BXA2/PgnJ m 7874.0 0.0   1   0.0 0.0 7874.0, 7874.0 0.54
BXA7/PgnJ m 4659.0 0.0   1   0.0 0.0 4659.0, 4659.0 -1.34
BXA8/PgnJ m 6590.0 0.0   1   0.0 0.0 6590.0, 6590.0 -0.21
BXD11/TyJ m 4637.0 0.0   1   0.0 0.0 4637.0, 4637.0 -1.35
BXD12/TyJ m 10951.0 0.0   1   0.0 0.0 10951.0, 10951.0 2.34
BXD13/TyJ m 6233.0 0.0   1   0.0 0.0 6233.0, 6233.0 -0.42
BXD14/TyJ m 7903.0 0.0   1   0.0 0.0 7903.0, 7903.0 0.56
BXD15/TyJ m 4635.0 0.0   1   0.0 0.0 4635.0, 4635.0 -1.35
BXD18/TyJ m 5316.0 0.0   1   0.0 0.0 5316.0, 5316.0 -0.95
BXD19/TyJ m 7054.0 196.0   2   138.0 0.0277 6916.0, 7193.0 0.06
BXD1/TyJ m 5870.0 0.0   1   0.0 0.0 5870.0, 5870.0 -0.63
BXD20/TyJ m 8599.0 0.0   1   0.0 0.0 8599.0, 8599.0 0.96
BXD22/TyJ m 11606.0 0.0   1   0.0 0.0 11606.0, 11606.0 2.72
BXD24/TyJ m 7079.0 0.0   1   0.0 0.0 7079.0, 7079.0 0.08
BXD24/TyJ-Cep290rd16/J m 6557.0 0.0   1   0.0 0.0 6557.0, 6557.0 -0.23
BXD28/TyJ m 8317.0 2851.0   2   2016.0 0.343 6301.0, 10332.0 0.8
BXD29-Tlr4lps-2J/J m 8812.0 0.0   1   0.0 0.0 8812.0, 8812.0 1.09
BXD2/TyJ m 8381.0 0.0   1   0.0 0.0 8381.0, 8381.0 0.84
BXD32/TyJ m 4804.0 0.0   1   0.0 0.0 4804.0, 4804.0 -1.25
BXD34/TyJ m 3998.0 0.0   1   0.0 0.0 3998.0, 3998.0 -1.72
BXD38/TyJ m 6015.0 0.0   1   0.0 0.0 6015.0, 6015.0 -0.54
BXD39/TyJ m 5183.0 0.0   1   0.0 0.0 5183.0, 5183.0 -1.03
BXD40/TyJ m 9567.0 0.0   1   0.0 0.0 9567.0, 9567.0 1.53
BXD42/TyJ m 5101.0 0.0   1   0.0 0.0 5101.0, 5101.0 -1.08
BXD5/TyJ m 4315.0 0.0   1   0.0 0.0 4315.0, 4315.0 -1.54
BXD6/TyJ m 8057.0 0.0   1   0.0 0.0 8057.0, 8057.0 0.65
BXD8/TyJ m 6453.0 0.0   1   0.0 0.0 6453.0, 6453.0 -0.29
BXD9/TyJ m 7567.0 0.0   1   0.0 0.0 7567.0, 7567.0 0.36
BXH10/TyJ m 7482.0 0.0   1   0.0 0.0 7482.0, 7482.0 0.31
BXH19/TyJ m 7919.0 0.0   1   0.0 0.0 7919.0, 7919.0 0.57
BXH20/KccJ m 5998.0 0.0   1   0.0 0.0 5998.0, 5998.0 -0.55
BXH22/KccJ m 8714.0 0.0   1   0.0 0.0 8714.0, 8714.0 1.03
BXH2/TyJ m 7814.0 0.0   1   0.0 0.0 7814.0, 7814.0 0.51
BXH4/TyJ m 5696.0 637.0   2   450.0 0.112 5246.0, 6146.0 -0.73
BXH6/TyJ m 5349.0 0.0   1   0.0 0.0 5349.0, 5349.0 -0.93
BXH7/TyJ m 7160.0 0.0   1   0.0 0.0 7160.0, 7160.0 0.12
BXH8/TyJ m 8893.0 0.0   1   0.0 0.0 8893.0, 8893.0 1.14
BXH9/TyJ m 6396.0 0.0   1   0.0 0.0 6396.0, 6396.0 -0.32
C3H/HeJ m 5626.0 0.0   1   0.0 0.0 5626.0, 5626.0 -0.77
C57BL/6J m 5575.0 707.0   5 316.0 0.127 5015.0, 6542.0 -0.8
C57L/J m 11157.0 0.0   1   0.0 0.0 11157.0, 11157.0 2.46
CAST/EiJ m 4424.0 0.0   1   0.0 0.0 4424.0, 4424.0 -1.47
CBA/J m 5985.0 0.0   1   0.0 0.0 5985.0, 5985.0 -0.56
CXB11/HiAJ m 8993.0 1805.0   2   1276.0 0.201 7716.0, 10269.0 1.19
CXB12/HiAJ m 4982.0 378.0   2   268.0 0.076 4715.0, 5250.0 -1.15
CXB13/HiAJ m 6206.0 2550.0   3 1472.0 0.411 4538.0, 9141.0 -0.43
CXB1/ByJ m 5295.0 722.0   3 417.0 0.136 4466.0, 5785.0 -0.96
CXB2/ByJ m 6857.0 445.0   3 257.0 0.0649 6551.0, 7368.0 -0.05
CXB3/ByJ m 5886.0 1727.0   2   1221.0 0.293 4665.0, 7108.0 -0.62
CXB4/ByJ m 6069.0 2384.0   2   1685.0 0.393 4384.0, 7755.0 -0.51
CXB6/ByJ m 5624.0 618.0   3 357.0 0.11 4918.0, 6065.0 -0.77
CXB7/ByJ m 5908.0 492.0   2   348.0 0.0832 5560.0, 6255.0 -0.61
CXB8/HiAJ m 7599.0 1327.0   3 766.0 0.175 6250.0, 8903.0 0.38
CXB9/HiAJ m 7898.0 939.0   3 542.0 0.119 7062.0, 8914.0 0.56
DBA/2J m 5992.0 1086.0   4 543.0 0.181 4672.0, 7093.0 -0.56
FVB/NJ m 6639.0 0.0   1   0.0 0.0 6639.0, 6639.0 -0.18
I/LnJ m 5308.0 0.0   1   0.0 0.0 5308.0, 5308.0 -0.96
KK/HlJ m 5788.0 0.0   1   0.0 0.0 5788.0, 5788.0 -0.68
LG/J m 8800.0 0.0   1   0.0 0.0 8800.0, 8800.0 1.08
LP/J m 10212.0 0.0   1   0.0 0.0 10212.0, 10212.0 1.91
MA/MyJ m 5679.0 0.0   1   0.0 0.0 5679.0, 5679.0 -0.74
NOD/ShiLtJ m 6399.0 0.0   1   0.0 0.0 6399.0, 6399.0 -0.32
NON/ShiLtJ m 6433.0 0.0   1   0.0 0.0 6433.0, 6433.0 -0.3
NZW/LacJ m 7296.0 0.0   1   0.0 0.0 7296.0, 7296.0 0.2
PL/J m 6652.0 0.0   1   0.0 0.0 6652.0, 6652.0 -0.17
RIIIS/J m 8687.0 0.0   1   0.0 0.0 8687.0, 8687.0 1.02
SEA/GnJ m 5899.0 0.0   1   0.0 0.0 5899.0, 5899.0 -0.61
SJL/J m 8896.0 0.0   1   0.0 0.0 8896.0, 8896.0 1.14
SM/J m 6278.0 0.0   1   0.0 0.0 6278.0, 6278.0 -0.39
SWR/J m 6551.0 0.0   1   0.0 0.0 6551.0, 6551.0 -0.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 8296.3 924.4535 10179.3503 6413.2497
AXB19b/PgnJ m 9136.85 924.4535 11019.9003 7253.7997
AXB24/PgnJ m 6044.7 924.4535 7927.7503 4161.6497
BALB/cJ m 6082.5 924.4535 7965.5503 4199.4497
BXA16/PgnJ m 6816.3 924.4535 8699.3503 4933.2497
BXD19/TyJ m 7054.2 924.4535 8937.2503 5171.1497
BXD28/TyJ m 8316.65 924.4535 10199.7003 6433.5997
BXH4/TyJ m 5696.0 924.4535 7579.0503 3812.9497
C57BL/6J m 5575.28 584.6758 6766.2256 4384.3344
CXB11/HiAJ m 8992.55 924.4535 10875.6003 7109.4997
CXB12/HiAJ m 4982.4 924.4535 6865.4503 3099.3497
CXB13/HiAJ m 6205.9333 754.8132 7743.4374 4668.4292
CXB1/ByJ m 5295.1667 754.8132 6832.6708 3757.6626
CXB2/ByJ m 6857.3 754.8132 8394.8041 5319.7959
CXB3/ByJ m 5886.45 924.4535 7769.5003 4003.3997
CXB4/ByJ m 6069.25 924.4535 7952.3003 4186.1997
CXB6/ByJ m 5623.7667 754.8132 7161.2708 4086.2626
CXB7/ByJ m 5907.5 924.4535 7790.5503 4024.4497
CXB8/HiAJ m 7598.6333 754.8132 9136.1374 6061.1292
CXB9/HiAJ m 7898.1 754.8132 9435.6041 6360.5959
DBA/2J m 5992.475 653.6874 7323.9926 4660.9574




  GWAS USING LINEAR MIXED MODELS