Project measure / variable:   HMDPpheno10   xanthine

ID, description, units MPD:50502   xanthine   liver xanthine (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno10 - liver xanthine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means6332532   None
Median of the strain means6358604   None
SD of the strain means± 581887
Coefficient of variation (CV)0.0919
Min–max range of strain means4517668   –   7728960   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 9827705000018.12 467985952381.815 3.34 0.0009
Residuals 34 4763880876923.78 140114143438.935


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 5738320.0 0.0   1   0.0 0.0 5738320.0, 5738320.0 -1.02
A/J m 6733099.0 78699.0   2   55648.0 0.0117 6677450.0, 6788747.0 0.69
AKR/J m 5683288.0 0.0   1   0.0 0.0 5683288.0, 5683288.0 -1.12
AXB10/PgnJ m 6322866.0 0.0   1   0.0 0.0 6322866.0, 6322866.0 -0.02
AXB12/PgnJ m 6245002.0 0.0   1   0.0 0.0 6245002.0, 6245002.0 -0.15
AXB13/PgnJ m 6819347.0 0.0   1   0.0 0.0 6819347.0, 6819347.0 0.84
AXB15/PgnJ m 7003029.0 0.0   1   0.0 0.0 7003029.0, 7003029.0 1.15
AXB19a/PgnJ m 7234093.0 0.0   1   0.0 0.0 7234093.0, 7234093.0 1.55
AXB19b/PgnJ m 7276200.0 6798.0   2   4807.0 0.000934 7271393.0, 7281007.0 1.62
AXB19/PgnJ m 7294241.0 0.0   1   0.0 0.0 7294241.0, 7294241.0 1.65
AXB1/PgnJ m 7239609.0 0.0   1   0.0 0.0 7239609.0, 7239609.0 1.56
AXB23/PgnJ m 6314910.0 0.0   1   0.0 0.0 6314910.0, 6314910.0 -0.03
AXB24/PgnJ m 5749056.0 57321.0   2   40532.0 0.00997 5708524.0, 5789588.0 -1.0
AXB2/PgnJ m 6405833.0 0.0   1   0.0 0.0 6405833.0, 6405833.0 0.13
AXB4/PgnJ m 6271207.0 0.0   1   0.0 0.0 6271207.0, 6271207.0 -0.11
AXB5/PgnJ m 4517668.0 0.0   1   0.0 0.0 4517668.0, 4517668.0 -3.12
AXB6/PgnJ m 7217036.0 0.0   1   0.0 0.0 7217036.0, 7217036.0 1.52
AXB8/PgnJ m 6525219.0 0.0   1   0.0 0.0 6525219.0, 6525219.0 0.33
BALB/cJ m 6006392.0 313141.0   3 180792.0 0.0521 5781492.0, 6364040.0 -0.56
BTBR T+ Itpr3tf/J m 5077818.0 0.0   1   0.0 0.0 5077818.0, 5077818.0 -2.16
BUB/BnJ m 6413734.0 0.0   1   0.0 0.0 6413734.0, 6413734.0 0.14
BXA11/PgnJ m 6570068.0 0.0   1   0.0 0.0 6570068.0, 6570068.0 0.41
BXA12/PgnJ m 5357256.0 0.0   1   0.0 0.0 5357256.0, 5357256.0 -1.68
BXA13/PgnJ m 7471160.0 0.0   1   0.0 0.0 7471160.0, 7471160.0 1.96
BXA14/PgnJ m 6786768.0 0.0   1   0.0 0.0 6786768.0, 6786768.0 0.78
BXA16/PgnJ m 6380233.0 222353.0   2   157227.0 0.0349 6223006.0, 6537460.0 0.08
BXA1/PgnJ m 5965280.0 0.0   1   0.0 0.0 5965280.0, 5965280.0 -0.63
BXA24/PgnJ m 6641442.0 0.0   1   0.0 0.0 6641442.0, 6641442.0 0.53
BXA25/PgnJ m 5844928.0 0.0   1   0.0 0.0 5844928.0, 5844928.0 -0.84
BXA26/PgnJ m 5248904.0 0.0   1   0.0 0.0 5248904.0, 5248904.0 -1.86
BXA2/PgnJ m 6192222.0 0.0   1   0.0 0.0 6192222.0, 6192222.0 -0.24
BXA4/PgnJ m 6241086.0 0.0   1   0.0 0.0 6241086.0, 6241086.0 -0.16
BXA7/PgnJ m 6450406.0 0.0   1   0.0 0.0 6450406.0, 6450406.0 0.2
BXA8/PgnJ m 6211408.0 0.0   1   0.0 0.0 6211408.0, 6211408.0 -0.21
BXD11/TyJ m 6216456.0 0.0   1   0.0 0.0 6216456.0, 6216456.0 -0.2
BXD12/TyJ m 7407324.0 0.0   1   0.0 0.0 7407324.0, 7407324.0 1.85
BXD13/TyJ m 5927466.0 0.0   1   0.0 0.0 5927466.0, 5927466.0 -0.7
BXD14/TyJ m 6672166.0 0.0   1   0.0 0.0 6672166.0, 6672166.0 0.58
BXD15/TyJ m 6716930.0 0.0   1   0.0 0.0 6716930.0, 6716930.0 0.66
BXD18/TyJ m 5501924.0 0.0   1   0.0 0.0 5501924.0, 5501924.0 -1.43
BXD19/TyJ m 6363552.0 306696.0   2   216866.0 0.0482 6146685.0, 6580418.0 0.05
BXD1/TyJ m 6228156.0 0.0   1   0.0 0.0 6228156.0, 6228156.0 -0.18
BXD20/TyJ m 5608365.0 0.0   1   0.0 0.0 5608365.0, 5608365.0 -1.24
BXD21/TyJ m 6191838.0 0.0   1   0.0 0.0 6191838.0, 6191838.0 -0.24
BXD22/TyJ m 7069114.0 0.0   1   0.0 0.0 7069114.0, 7069114.0 1.27
BXD24/TyJ m 6369558.0 0.0   1   0.0 0.0 6369558.0, 6369558.0 0.06
BXD24/TyJ-Cep290rd16/J m 6503584.0 0.0   1   0.0 0.0 6503584.0, 6503584.0 0.29
BXD28/TyJ m 5587134.0 151795.0   2   107335.0 0.0272 5479799.0, 5694470.0 -1.28
BXD29-Tlr4lps-2J/J m 6614020.0 0.0   1   0.0 0.0 6614020.0, 6614020.0 0.48
BXD2/TyJ m 6416420.0 0.0   1   0.0 0.0 6416420.0, 6416420.0 0.14
BXD32/TyJ m 6736954.0 0.0   1   0.0 0.0 6736954.0, 6736954.0 0.7
BXD33/TyJ m 6395130.0 0.0   1   0.0 0.0 6395130.0, 6395130.0 0.11
BXD34/TyJ m 6372156.0 0.0   1   0.0 0.0 6372156.0, 6372156.0 0.07
BXD36/TyJ m 6549866.0 0.0   1   0.0 0.0 6549866.0, 6549866.0 0.37
BXD38/TyJ m 6474132.0 0.0   1   0.0 0.0 6474132.0, 6474132.0 0.24
BXD39/TyJ m 6353656.0 0.0   1   0.0 0.0 6353656.0, 6353656.0 0.04
BXD40/TyJ m 6103475.0 0.0   1   0.0 0.0 6103475.0, 6103475.0 -0.39
BXD42/TyJ m 5660588.0 0.0   1   0.0 0.0 5660588.0, 5660588.0 -1.15
BXD5/TyJ m 6569376.0 0.0   1   0.0 0.0 6569376.0, 6569376.0 0.41
BXD6/TyJ m 6288540.0 0.0   1   0.0 0.0 6288540.0, 6288540.0 -0.08
BXD8/TyJ m 5766544.0 0.0   1   0.0 0.0 5766544.0, 5766544.0 -0.97
BXD9/TyJ m 6533370.0 0.0   1   0.0 0.0 6533370.0, 6533370.0 0.35
BXH10/TyJ m 6912646.0 0.0   1   0.0 0.0 6912646.0, 6912646.0 1.0
BXH19/TyJ m 6442662.0 0.0   1   0.0 0.0 6442662.0, 6442662.0 0.19
BXH20/KccJ m 6982719.0 0.0   1   0.0 0.0 6982719.0, 6982719.0 1.12
BXH22/KccJ m 7176162.0 0.0   1   0.0 0.0 7176162.0, 7176162.0 1.45
BXH2/TyJ m 6760793.0 0.0   1   0.0 0.0 6760793.0, 6760793.0 0.74
BXH4/TyJ m 6605678.0 147483.0   2   104286.0 0.0223 6501391.0, 6709964.0 0.47
BXH6/TyJ m 6190470.0 0.0   1   0.0 0.0 6190470.0, 6190470.0 -0.24
BXH7/TyJ m 6103523.0 0.0   1   0.0 0.0 6103523.0, 6103523.0 -0.39
BXH8/TyJ m 5685292.0 0.0   1   0.0 0.0 5685292.0, 5685292.0 -1.11
BXH9/TyJ m 7064600.0 0.0   1   0.0 0.0 7064600.0, 7064600.0 1.26
C3H/HeJ m 5928642.0 387122.0   2   273736.0 0.0653 5654906.0, 6202378.0 -0.69
C57BL/6J m 6700722.0 378781.0   5 169396.0 0.0565 6345700.0, 7112793.0 0.63
C57L/J m 5416082.0 0.0   1   0.0 0.0 5416082.0, 5416082.0 -1.57
C58/J m 6934532.0 0.0   1   0.0 0.0 6934532.0, 6934532.0 1.03
CAST/EiJ m 5793763.0 0.0   1   0.0 0.0 5793763.0, 5793763.0 -0.93
CBA/J m 5446948.0 0.0   1   0.0 0.0 5446948.0, 5446948.0 -1.52
CE/J m 6769867.0 0.0   1   0.0 0.0 6769867.0, 6769867.0 0.75
CXB11/HiAJ m 6598025.0 295284.0   2   208797.0 0.0448 6389228.0, 6806822.0 0.46
CXB12/HiAJ m 5562239.0 2108.0   2   1490.0 0.000379 5560748.0, 5563730.0 -1.32
CXB13/HiAJ m 6348677.0 876500.0   3 506048.0 0.138 5587202.0, 7306796.0 0.03
CXB1/ByJ m 6633304.0 657138.0   3 379399.0 0.0991 6193250.0, 7388676.0 0.52
CXB2/ByJ m 6638808.0 163685.0   3 94504.0 0.0247 6464030.0, 6788507.0 0.53
CXB3/ByJ m 6712118.0 63942.0   2   45214.0 0.00953 6666904.0, 6757332.0 0.65
CXB4/ByJ m 5908536.0 218079.0   2   154205.0 0.0369 5754330.0, 6062740.0 -0.73
CXB6/ByJ m 5789764.0 612942.0   3 353882.0 0.106 5111714.0, 6304526.0 -0.93
CXB7/ByJ m 6256724.0 212254.0   2   150086.0 0.0339 6106638.0, 6406810.0 -0.13
CXB8/HiAJ m 6536014.0 146670.0   3 84680.0 0.0224 6380028.0, 6671133.0 0.35
CXB9/HiAJ m 5970205.0 254556.0   3 146968.0 0.0426 5676374.0, 6123943.0 -0.62
DBA/2J m 5944339.0 167846.0   4 83923.0 0.0282 5801680.0, 6186656.0 -0.67
FVB/NJ m 5891384.0 0.0   1   0.0 0.0 5891384.0, 5891384.0 -0.76
I/LnJ m 6299008.0 0.0   1   0.0 0.0 6299008.0, 6299008.0 -0.06
KK/HlJ m 7041508.0 0.0   1   0.0 0.0 7041508.0, 7041508.0 1.22
LG/J m 7009266.0 0.0   1   0.0 0.0 7009266.0, 7009266.0 1.16
LP/J m 5929468.0 0.0   1   0.0 0.0 5929468.0, 5929468.0 -0.69
MA/MyJ m 5493459.0 0.0   1   0.0 0.0 5493459.0, 5493459.0 -1.44
NOD/ShiLtJ m 5628297.0 0.0   1   0.0 0.0 5628297.0, 5628297.0 -1.21
NON/ShiLtJ m 5827104.0 0.0   1   0.0 0.0 5827104.0, 5827104.0 -0.87
NZW/LacJ m 6131249.0 0.0   1   0.0 0.0 6131249.0, 6131249.0 -0.35
PL/J m 7431574.0 0.0   1   0.0 0.0 7431574.0, 7431574.0 1.89
RIIIS/J m 7728960.0 0.0   1   0.0 0.0 7728960.0, 7728960.0 2.4
SEA/GnJ m 6271053.0 0.0   1   0.0 0.0 6271053.0, 6271053.0 -0.11
SJL/J m 5435595.0 0.0   1   0.0 0.0 5435595.0, 5435595.0 -1.54
SM/J m 5709822.0 0.0   1   0.0 0.0 5709822.0, 5709822.0 -1.07
SWR/J m 6959854.0 0.0   1   0.0 0.0 6959854.0, 6959854.0 1.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 6733098.75 264682.9645 7270999.2514 6195198.2486
AXB19b/PgnJ m 7276200.0 264682.9645 7814100.5014 6738299.4986
AXB24/PgnJ m 5749055.75 264682.9645 6286956.2514 5211155.2486
BALB/cJ m 6006391.6667 216112.7356 6445585.5869 5567197.7464
BXA16/PgnJ m 6380233.0 264682.9645 6918133.5014 5842332.4986
BXD19/TyJ m 6363551.5 264682.9645 6901452.0014 5825650.9986
BXD28/TyJ m 5587134.25 264682.9645 6125034.7514 5049233.7486
BXH4/TyJ m 6605677.5 264682.9645 7143578.0014 6067776.9986
C3H/HeJ m 5928642.25 264682.9645 6466542.7514 5390741.7486
C57BL/6J m 6700721.7 167400.2052 7040919.8478 6360523.5522
CXB11/HiAJ m 6598025.0 264682.9645 7135925.5014 6060124.4986
CXB12/HiAJ m 5562239.0 264682.9645 6100139.5014 5024338.4986
CXB13/HiAJ m 6348677.3333 216112.7356 6787871.2536 5909483.4131
CXB1/ByJ m 6633304.1667 216112.7356 7072498.0869 6194110.2464
CXB2/ByJ m 6638807.6667 216112.7356 7078001.5869 6199613.7464
CXB3/ByJ m 6712118.5 264682.9645 7250019.0014 6174217.9986
CXB4/ByJ m 5908535.5 264682.9645 6446436.0014 5370634.9986
CXB6/ByJ m 5789764.3333 216112.7356 6228958.2536 5350570.4131
CXB7/ByJ m 6256723.75 264682.9645 6794624.2514 5718823.2486
CXB8/HiAJ m 6536014.1667 216112.7356 6975208.0869 6096820.2464
CXB9/HiAJ m 5970205.3333 216112.7356 6409399.2536 5531011.4131
DBA/2J m 5944338.875 187159.1191 6324691.9671 5563985.7829




  GWAS USING LINEAR MIXED MODELS