Project measure / variable:   HMDPpheno10   xanthine

ID, description, units MPD:50502   xanthine   liver xanthine (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno10 - liver xanthine (16h fast), relative abundance

RIIIS/JBXA13/PgnJPL/JBXD12/TyJAXB19/PgnJAXB19b/PgnJAXB1/PgnJAXB19a/PgnJAXB6/PgnJBXH22/KccJBXD22/TyJBXH9/TyJKK/HlJLG/JAXB15/PgnJBXH20/KccJSWR/JC58/JBXH10/TyJAXB13/PgnJBXA14/PgnJCE/JBXH2/TyJBXD32/TyJA/JBXD15/TyJCXB3/ByJC57BL/6JBXD14/TyJBXA24/PgnJCXB2/ByJCXB1/ByJBXD29-Tlr4<lps-2J>/JBXH4/TyJCXB11/HiAJBXA11/PgnJBXD5/TyJBXD36/TyJCXB8/HiAJBXD9/TyJAXB8/PgnJBXD24/TyJ-Cep290<rd16>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 T<+> Itpr3<tf>/JAXB5/PgnJ (no units) 4,500,0005,000,0005,500,0006,000,0006,500,0007,000,0007,500,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means6332532   None
Median of the strain means6358604   None
SD of the strain means± 581887
Coefficient of variation (CV)0.0919
Min–max range of strain means4517668   –   7728960   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 9827705000018.12 467985952381.815 3.34 0.0009
Residuals 34 4763880876923.78 140114143438.935


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 106 (106)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 5738320.0 0.0   1   0.0 0.0 5738320.0, 5738320.0 -1.02
A/J m 6733099.0 78699.0   2   55648.0 0.0117 6677450.0, 6788747.0 0.69
AKR/J m 5683288.0 0.0   1   0.0 0.0 5683288.0, 5683288.0 -1.12
AXB10/PgnJ m 6322866.0 0.0   1   0.0 0.0 6322866.0, 6322866.0 -0.02
AXB12/PgnJ m 6245002.0 0.0   1   0.0 0.0 6245002.0, 6245002.0 -0.15
AXB13/PgnJ m 6819347.0 0.0   1   0.0 0.0 6819347.0, 6819347.0 0.84
AXB15/PgnJ m 7003029.0 0.0   1   0.0 0.0 7003029.0, 7003029.0 1.15
AXB19a/PgnJ m 7234093.0 0.0   1   0.0 0.0 7234093.0, 7234093.0 1.55
AXB19b/PgnJ m 7276200.0 6798.0   2   4807.0 0.000934 7271393.0, 7281007.0 1.62
AXB19/PgnJ m 7294241.0 0.0   1   0.0 0.0 7294241.0, 7294241.0 1.65
AXB1/PgnJ m 7239609.0 0.0   1   0.0 0.0 7239609.0, 7239609.0 1.56
AXB23/PgnJ m 6314910.0 0.0   1   0.0 0.0 6314910.0, 6314910.0 -0.03
AXB24/PgnJ m 5749056.0 57321.0   2   40532.0 0.00997 5708524.0, 5789588.0 -1.0
AXB2/PgnJ m 6405833.0 0.0   1   0.0 0.0 6405833.0, 6405833.0 0.13
AXB4/PgnJ m 6271207.0 0.0   1   0.0 0.0 6271207.0, 6271207.0 -0.11
AXB5/PgnJ m 4517668.0 0.0   1   0.0 0.0 4517668.0, 4517668.0 -3.12
AXB6/PgnJ m 7217036.0 0.0   1   0.0 0.0 7217036.0, 7217036.0 1.52
AXB8/PgnJ m 6525219.0 0.0   1   0.0 0.0 6525219.0, 6525219.0 0.33
BALB/cJ m 6006392.0 313141.0   3 180792.0 0.0521 5781492.0, 6364040.0 -0.56
BTBR T+ Itpr3tf/J m 5077818.0 0.0   1   0.0 0.0 5077818.0, 5077818.0 -2.16
BUB/BnJ m 6413734.0 0.0   1   0.0 0.0 6413734.0, 6413734.0 0.14
BXA11/PgnJ m 6570068.0 0.0   1   0.0 0.0 6570068.0, 6570068.0 0.41
BXA12/PgnJ m 5357256.0 0.0   1   0.0 0.0 5357256.0, 5357256.0 -1.68
BXA13/PgnJ m 7471160.0 0.0   1   0.0 0.0 7471160.0, 7471160.0 1.96
BXA14/PgnJ m 6786768.0 0.0   1   0.0 0.0 6786768.0, 6786768.0 0.78
BXA16/PgnJ m 6380233.0 222353.0   2   157227.0 0.0349 6223006.0, 6537460.0 0.08
BXA1/PgnJ m 5965280.0 0.0   1   0.0 0.0 5965280.0, 5965280.0 -0.63
BXA24/PgnJ m 6641442.0 0.0   1   0.0 0.0 6641442.0, 6641442.0 0.53
BXA25/PgnJ m 5844928.0 0.0   1   0.0 0.0 5844928.0, 5844928.0 -0.84
BXA26/PgnJ m 5248904.0 0.0   1   0.0 0.0 5248904.0, 5248904.0 -1.86
BXA2/PgnJ m 6192222.0 0.0   1   0.0 0.0 6192222.0, 6192222.0 -0.24
BXA4/PgnJ m 6241086.0 0.0   1   0.0 0.0 6241086.0, 6241086.0 -0.16
BXA7/PgnJ m 6450406.0 0.0   1   0.0 0.0 6450406.0, 6450406.0 0.2
BXA8/PgnJ m 6211408.0 0.0   1   0.0 0.0 6211408.0, 6211408.0 -0.21
BXD11/TyJ m 6216456.0 0.0   1   0.0 0.0 6216456.0, 6216456.0 -0.2
BXD12/TyJ m 7407324.0 0.0   1   0.0 0.0 7407324.0, 7407324.0 1.85
BXD13/TyJ m 5927466.0 0.0   1   0.0 0.0 5927466.0, 5927466.0 -0.7
BXD14/TyJ m 6672166.0 0.0   1   0.0 0.0 6672166.0, 6672166.0 0.58
BXD15/TyJ m 6716930.0 0.0   1   0.0 0.0 6716930.0, 6716930.0 0.66
BXD18/TyJ m 5501924.0 0.0   1   0.0 0.0 5501924.0, 5501924.0 -1.43
BXD19/TyJ m 6363552.0 306696.0   2   216866.0 0.0482 6146685.0, 6580418.0 0.05
BXD1/TyJ m 6228156.0 0.0   1   0.0 0.0 6228156.0, 6228156.0 -0.18
BXD20/TyJ m 5608365.0 0.0   1   0.0 0.0 5608365.0, 5608365.0 -1.24
BXD21/TyJ m 6191838.0 0.0   1   0.0 0.0 6191838.0, 6191838.0 -0.24
BXD22/TyJ m 7069114.0 0.0   1   0.0 0.0 7069114.0, 7069114.0 1.27
BXD24/TyJ m 6369558.0 0.0   1   0.0 0.0 6369558.0, 6369558.0 0.06
BXD24/TyJ-Cep290rd16/J m 6503584.0 0.0   1   0.0 0.0 6503584.0, 6503584.0 0.29
BXD28/TyJ m 5587134.0 151795.0   2   107335.0 0.0272 5479799.0, 5694470.0 -1.28
BXD29-Tlr4lps-2J/J m 6614020.0 0.0   1   0.0 0.0 6614020.0, 6614020.0 0.48
BXD2/TyJ m 6416420.0 0.0   1   0.0 0.0 6416420.0, 6416420.0 0.14
BXD32/TyJ m 6736954.0 0.0   1   0.0 0.0 6736954.0, 6736954.0 0.7
BXD33/TyJ m 6395130.0 0.0   1   0.0 0.0 6395130.0, 6395130.0 0.11
BXD34/TyJ m 6372156.0 0.0   1   0.0 0.0 6372156.0, 6372156.0 0.07
BXD36/TyJ m 6549866.0 0.0   1   0.0 0.0 6549866.0, 6549866.0 0.37
BXD38/TyJ m 6474132.0 0.0   1   0.0 0.0 6474132.0, 6474132.0 0.24
BXD39/TyJ m 6353656.0 0.0   1   0.0 0.0 6353656.0, 6353656.0 0.04
BXD40/TyJ m 6103475.0 0.0   1   0.0 0.0 6103475.0, 6103475.0 -0.39
BXD42/TyJ m 5660588.0 0.0   1   0.0 0.0 5660588.0, 5660588.0 -1.15
BXD5/TyJ m 6569376.0 0.0   1   0.0 0.0 6569376.0, 6569376.0 0.41
BXD6/TyJ m 6288540.0 0.0   1   0.0 0.0 6288540.0, 6288540.0 -0.08
BXD8/TyJ m 5766544.0 0.0   1   0.0 0.0 5766544.0, 5766544.0 -0.97
BXD9/TyJ m 6533370.0 0.0   1   0.0 0.0 6533370.0, 6533370.0 0.35
BXH10/TyJ m 6912646.0 0.0   1   0.0 0.0 6912646.0, 6912646.0 1.0
BXH19/TyJ m 6442662.0 0.0   1   0.0 0.0 6442662.0, 6442662.0 0.19
BXH20/KccJ m 6982719.0 0.0   1   0.0 0.0 6982719.0, 6982719.0 1.12
BXH22/KccJ m 7176162.0 0.0   1   0.0 0.0 7176162.0, 7176162.0 1.45
BXH2/TyJ m 6760793.0 0.0   1   0.0 0.0 6760793.0, 6760793.0 0.74
BXH4/TyJ m 6605678.0 147483.0   2   104286.0 0.0223 6501391.0, 6709964.0 0.47
BXH6/TyJ m 6190470.0 0.0   1   0.0 0.0 6190470.0, 6190470.0 -0.24
BXH7/TyJ m 6103523.0 0.0   1   0.0 0.0 6103523.0, 6103523.0 -0.39
BXH8/TyJ m 5685292.0 0.0   1   0.0 0.0 5685292.0, 5685292.0 -1.11
BXH9/TyJ m 7064600.0 0.0   1   0.0 0.0 7064600.0, 7064600.0 1.26
C3H/HeJ m 5928642.0 387122.0   2   273736.0 0.0653 5654906.0, 6202378.0 -0.69
C57BL/6J m 6700722.0 378781.0   5 169396.0 0.0565 6345700.0, 7112793.0 0.63
C57L/J m 5416082.0 0.0   1   0.0 0.0 5416082.0, 5416082.0 -1.57
C58/J m 6934532.0 0.0   1   0.0 0.0 6934532.0, 6934532.0 1.03
CAST/EiJ m 5793763.0 0.0   1   0.0 0.0 5793763.0, 5793763.0 -0.93
CBA/J m 5446948.0 0.0   1   0.0 0.0 5446948.0, 5446948.0 -1.52
CE/J m 6769867.0 0.0   1   0.0 0.0 6769867.0, 6769867.0 0.75
CXB11/HiAJ m 6598025.0 295284.0   2   208797.0 0.0448 6389228.0, 6806822.0 0.46
CXB12/HiAJ m 5562239.0 2108.0   2   1490.0 0.000379 5560748.0, 5563730.0 -1.32
CXB13/HiAJ m 6348677.0 876500.0   3 506048.0 0.138 5587202.0, 7306796.0 0.03
CXB1/ByJ m 6633304.0 657138.0   3 379399.0 0.0991 6193250.0, 7388676.0 0.52
CXB2/ByJ m 6638808.0 163685.0   3 94504.0 0.0247 6464030.0, 6788507.0 0.53
CXB3/ByJ m 6712118.0 63942.0   2   45214.0 0.00953 6666904.0, 6757332.0 0.65
CXB4/ByJ m 5908536.0 218079.0   2   154205.0 0.0369 5754330.0, 6062740.0 -0.73
CXB6/ByJ m 5789764.0 612942.0   3 353882.0 0.106 5111714.0, 6304526.0 -0.93
CXB7/ByJ m 6256724.0 212254.0   2   150086.0 0.0339 6106638.0, 6406810.0 -0.13
CXB8/HiAJ m 6536014.0 146670.0   3 84680.0 0.0224 6380028.0, 6671133.0 0.35
CXB9/HiAJ m 5970205.0 254556.0   3 146968.0 0.0426 5676374.0, 6123943.0 -0.62
DBA/2J m 5944339.0 167846.0   4 83923.0 0.0282 5801680.0, 6186656.0 -0.67
FVB/NJ m 5891384.0 0.0   1   0.0 0.0 5891384.0, 5891384.0 -0.76
I/LnJ m 6299008.0 0.0   1   0.0 0.0 6299008.0, 6299008.0 -0.06
KK/HlJ m 7041508.0 0.0   1   0.0 0.0 7041508.0, 7041508.0 1.22
LG/J m 7009266.0 0.0   1   0.0 0.0 7009266.0, 7009266.0 1.16
LP/J m 5929468.0 0.0   1   0.0 0.0 5929468.0, 5929468.0 -0.69
MA/MyJ m 5493459.0 0.0   1   0.0 0.0 5493459.0, 5493459.0 -1.44
NOD/ShiLtJ m 5628297.0 0.0   1   0.0 0.0 5628297.0, 5628297.0 -1.21
NON/ShiLtJ m 5827104.0 0.0   1   0.0 0.0 5827104.0, 5827104.0 -0.87
NZW/LacJ m 6131249.0 0.0   1   0.0 0.0 6131249.0, 6131249.0 -0.35
PL/J m 7431574.0 0.0   1   0.0 0.0 7431574.0, 7431574.0 1.89
RIIIS/J m 7728960.0 0.0   1   0.0 0.0 7728960.0, 7728960.0 2.4
SEA/GnJ m 6271053.0 0.0   1   0.0 0.0 6271053.0, 6271053.0 -0.11
SJL/J m 5435595.0 0.0   1   0.0 0.0 5435595.0, 5435595.0 -1.54
SM/J m 5709822.0 0.0   1   0.0 0.0 5709822.0, 5709822.0 -1.07
SWR/J m 6959854.0 0.0   1   0.0 0.0 6959854.0, 6959854.0 1.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 6733098.75 264682.9645 7270999.2514 6195198.2486
AXB19b/PgnJ m 7276200.0 264682.9645 7814100.5014 6738299.4986
AXB24/PgnJ m 5749055.75 264682.9645 6286956.2514 5211155.2486
BALB/cJ m 6006391.6667 216112.7356 6445585.5869 5567197.7464
BXA16/PgnJ m 6380233.0 264682.9645 6918133.5014 5842332.4986
BXD19/TyJ m 6363551.5 264682.9645 6901452.0014 5825650.9986
BXD28/TyJ m 5587134.25 264682.9645 6125034.7514 5049233.7486
BXH4/TyJ m 6605677.5 264682.9645 7143578.0014 6067776.9986
C3H/HeJ m 5928642.25 264682.9645 6466542.7514 5390741.7486
C57BL/6J m 6700721.7 167400.2052 7040919.8478 6360523.5522
CXB11/HiAJ m 6598025.0 264682.9645 7135925.5014 6060124.4986
CXB12/HiAJ m 5562239.0 264682.9645 6100139.5014 5024338.4986
CXB13/HiAJ m 6348677.3333 216112.7356 6787871.2536 5909483.4131
CXB1/ByJ m 6633304.1667 216112.7356 7072498.0869 6194110.2464
CXB2/ByJ m 6638807.6667 216112.7356 7078001.5869 6199613.7464
CXB3/ByJ m 6712118.5 264682.9645 7250019.0014 6174217.9986
CXB4/ByJ m 5908535.5 264682.9645 6446436.0014 5370634.9986
CXB6/ByJ m 5789764.3333 216112.7356 6228958.2536 5350570.4131
CXB7/ByJ m 6256723.75 264682.9645 6794624.2514 5718823.2486
CXB8/HiAJ m 6536014.1667 216112.7356 6975208.0869 6096820.2464
CXB9/HiAJ m 5970205.3333 216112.7356 6409399.2536 5531011.4131
DBA/2J m 5944338.875 187159.1191 6324691.9671 5563985.7829




  GWAS USING LINEAR MIXED MODELS

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