Project measure / variable:   HMDPpheno10   GGV

ID, description, units MPD:50532   GGV   gamma-glutamylvaline (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno10 - gamma-glutamylvaline (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means140635   None
Median of the strain means130418   None
SD of the strain means± 67167
Coefficient of variation (CV)0.478
Min–max range of strain means28571   –   372554   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 218596687054.856 10409366050.2312 3.6482 0.0004
Residuals 34 97012210406.5126 2853300306.0739


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 137440.0 0.0   1   0.0 0.0 137440.0, 137440.0 -0.05
A/J m 202358.0 150237.0   2   106233.0 0.742 96125.0, 308592.0 0.92
AKR/J m 372554.0 0.0   1   0.0 0.0 372554.0, 372554.0 3.45
AXB10/PgnJ m 97856.0 0.0   1   0.0 0.0 97856.0, 97856.0 -0.64
AXB12/PgnJ m 127678.0 0.0   1   0.0 0.0 127678.0, 127678.0 -0.19
AXB13/PgnJ m 117032.0 0.0   1   0.0 0.0 117032.0, 117032.0 -0.35
AXB15/PgnJ m 122758.0 0.0   1   0.0 0.0 122758.0, 122758.0 -0.27
AXB19a/PgnJ m 94036.0 0.0   1   0.0 0.0 94036.0, 94036.0 -0.69
AXB19b/PgnJ m 205364.0 76565.0   2   54140.0 0.373 151224.0, 259504.0 0.96
AXB19/PgnJ m 103902.0 0.0   1   0.0 0.0 103902.0, 103902.0 -0.55
AXB1/PgnJ m 99795.0 0.0   1   0.0 0.0 99795.0, 99795.0 -0.61
AXB23/PgnJ m 180667.0 0.0   1   0.0 0.0 180667.0, 180667.0 0.6
AXB24/PgnJ m 198553.0 143356.0   2   101368.0 0.722 97185.0, 299920.0 0.86
AXB2/PgnJ m 143216.0 0.0   1   0.0 0.0 143216.0, 143216.0 0.04
AXB4/PgnJ m 124408.0 0.0   1   0.0 0.0 124408.0, 124408.0 -0.24
AXB5/PgnJ m 81911.0 0.0   1   0.0 0.0 81911.0, 81911.0 -0.87
AXB6/PgnJ m 184706.0 0.0   1   0.0 0.0 184706.0, 184706.0 0.66
AXB8/PgnJ m 110124.0 0.0   1   0.0 0.0 110124.0, 110124.0 -0.45
BALB/cJ m 170977.0 21139.0   3 12205.0 0.124 150902.0, 193040.0 0.45
BTBR T+ Itpr3tf/J m 220774.0 0.0   1   0.0 0.0 220774.0, 220774.0 1.19
BUB/BnJ m 205550.0 0.0   1   0.0 0.0 205550.0, 205550.0 0.97
BXA11/PgnJ m 246580.0 0.0   1   0.0 0.0 246580.0, 246580.0 1.58
BXA12/PgnJ m 92043.0 0.0   1   0.0 0.0 92043.0, 92043.0 -0.72
BXA13/PgnJ m 224457.0 0.0   1   0.0 0.0 224457.0, 224457.0 1.25
BXA14/PgnJ m 181813.0 0.0   1   0.0 0.0 181813.0, 181813.0 0.61
BXA16/PgnJ m 121259.0 64723.0   2   45766.0 0.534 75494.0, 167025.0 -0.29
BXA1/PgnJ m 156049.0 0.0   1   0.0 0.0 156049.0, 156049.0 0.23
BXA24/PgnJ m 281951.0 0.0   1   0.0 0.0 281951.0, 281951.0 2.1
BXA25/PgnJ m 50287.0 0.0   1   0.0 0.0 50287.0, 50287.0 -1.35
BXA26/PgnJ m 83631.0 0.0   1   0.0 0.0 83631.0, 83631.0 -0.85
BXA2/PgnJ m 175728.0 0.0   1   0.0 0.0 175728.0, 175728.0 0.52
BXA4/PgnJ m 133684.0 0.0   1   0.0 0.0 133684.0, 133684.0 -0.1
BXA7/PgnJ m 121774.0 0.0   1   0.0 0.0 121774.0, 121774.0 -0.28
BXA8/PgnJ m 227676.0 0.0   1   0.0 0.0 227676.0, 227676.0 1.3
BXD11/TyJ m 112791.0 0.0   1   0.0 0.0 112791.0, 112791.0 -0.41
BXD12/TyJ m 135422.0 0.0   1   0.0 0.0 135422.0, 135422.0 -0.08
BXD13/TyJ m 123521.0 0.0   1   0.0 0.0 123521.0, 123521.0 -0.25
BXD14/TyJ m 99654.0 0.0   1   0.0 0.0 99654.0, 99654.0 -0.61
BXD15/TyJ m 88693.0 0.0   1   0.0 0.0 88693.0, 88693.0 -0.77
BXD18/TyJ m 83705.0 0.0   1   0.0 0.0 83705.0, 83705.0 -0.85
BXD19/TyJ m 81707.0 47100.0   2   33305.0 0.576 48402.0, 115012.0 -0.88
BXD1/TyJ m 70459.0 0.0   1   0.0 0.0 70459.0, 70459.0 -1.04
BXD20/TyJ m 118626.0 0.0   1   0.0 0.0 118626.0, 118626.0 -0.33
BXD21/TyJ m 54681.0 0.0   1   0.0 0.0 54681.0, 54681.0 -1.28
BXD22/TyJ m 91992.0 0.0   1   0.0 0.0 91992.0, 91992.0 -0.72
BXD24/TyJ m 78670.0 0.0   1   0.0 0.0 78670.0, 78670.0 -0.92
BXD24/TyJ-Cep290rd16/J m 46950.0 0.0   1   0.0 0.0 46950.0, 46950.0 -1.39
BXD28/TyJ m 68365.0 4119.0   2   2913.0 0.0603 65452.0, 71278.0 -1.08
BXD29-Tlr4lps-2J/J m 121810.0 0.0   1   0.0 0.0 121810.0, 121810.0 -0.28
BXD2/TyJ m 90550.0 0.0   1   0.0 0.0 90550.0, 90550.0 -0.75
BXD32/TyJ m 98530.0 0.0   1   0.0 0.0 98530.0, 98530.0 -0.63
BXD33/TyJ m 65317.0 0.0   1   0.0 0.0 65317.0, 65317.0 -1.12
BXD34/TyJ m 28571.0 0.0   1   0.0 0.0 28571.0, 28571.0 -1.67
BXD36/TyJ m 53015.0 0.0   1   0.0 0.0 53015.0, 53015.0 -1.3
BXD38/TyJ m 31763.0 0.0   1   0.0 0.0 31763.0, 31763.0 -1.62
BXD39/TyJ m 58135.0 0.0   1   0.0 0.0 58135.0, 58135.0 -1.23
BXD40/TyJ m 73892.0 0.0   1   0.0 0.0 73892.0, 73892.0 -0.99
BXD42/TyJ m 36992.0 0.0   1   0.0 0.0 36992.0, 36992.0 -1.54
BXD5/TyJ m 68733.0 0.0   1   0.0 0.0 68733.0, 68733.0 -1.07
BXD6/TyJ m 158089.0 0.0   1   0.0 0.0 158089.0, 158089.0 0.26
BXD8/TyJ m 44789.0 0.0   1   0.0 0.0 44789.0, 44789.0 -1.43
BXD9/TyJ m 74174.0 0.0   1   0.0 0.0 74174.0, 74174.0 -0.99
BXH10/TyJ m 126640.0 0.0   1   0.0 0.0 126640.0, 126640.0 -0.21
BXH19/TyJ m 297142.0 0.0   1   0.0 0.0 297142.0, 297142.0 2.33
BXH20/KccJ m 116358.0 0.0   1   0.0 0.0 116358.0, 116358.0 -0.36
BXH22/KccJ m 167266.0 0.0   1   0.0 0.0 167266.0, 167266.0 0.4
BXH2/TyJ m 236242.0 0.0   1   0.0 0.0 236242.0, 236242.0 1.42
BXH4/TyJ m 165126.0 1348.0   2   953.0 0.00816 164173.0, 166079.0 0.36
BXH6/TyJ m 89337.0 0.0   1   0.0 0.0 89337.0, 89337.0 -0.76
BXH7/TyJ m 79659.0 0.0   1   0.0 0.0 79659.0, 79659.0 -0.91
BXH8/TyJ m 133159.0 0.0   1   0.0 0.0 133159.0, 133159.0 -0.11
BXH9/TyJ m 106718.0 0.0   1   0.0 0.0 106718.0, 106718.0 -0.5
C3H/HeJ m 171718.0 39198.0   2   27717.0 0.228 144001.0, 199436.0 0.46
C57BL/6J m 115434.0 26111.0   5 11677.0 0.226 87218.0, 157686.0 -0.38
C57L/J m 146429.0 0.0   1   0.0 0.0 146429.0, 146429.0 0.09
C58/J m 170290.0 0.0   1   0.0 0.0 170290.0, 170290.0 0.44
CAST/EiJ m 124898.0 0.0   1   0.0 0.0 124898.0, 124898.0 -0.23
CBA/J m 289948.0 0.0   1   0.0 0.0 289948.0, 289948.0 2.22
CE/J m 135072.0 0.0   1   0.0 0.0 135072.0, 135072.0 -0.08
CXB11/HiAJ m 214997.0 29280.0   2   20704.0 0.136 194293.0, 235702.0 1.11
CXB12/HiAJ m 135714.0 10172.0   2   7193.0 0.075 128522.0, 142907.0 -0.07
CXB13/HiAJ m 148897.0 10983.0   3 6341.0 0.0738 136290.0, 156394.0 0.12
CXB1/ByJ m 122515.0 33751.0   3 19486.0 0.275 87620.0, 154991.0 -0.27
CXB2/ByJ m 285041.0 21820.0   3 12598.0 0.0766 260136.0, 300799.0 2.15
CXB3/ByJ m 160211.0 53396.0   2   37757.0 0.333 122455.0, 197968.0 0.29
CXB4/ByJ m 142492.0 9266.0   2   6552.0 0.065 135940.0, 149044.0 0.03
CXB6/ByJ m 169383.0 3550.0   3 2049.0 0.021 165547.0, 172553.0 0.43
CXB7/ByJ m 296989.0 92047.0   2   65087.0 0.31 231902.0, 362076.0 2.33
CXB8/HiAJ m 236199.0 44523.0   3 25705.0 0.188 194713.0, 283237.0 1.42
CXB9/HiAJ m 259275.0 89551.0   3 51702.0 0.345 203613.0, 362576.0 1.77
DBA/2J m 81364.0 13830.0   4 6915.0 0.17 66063.0, 95732.0 -0.88
FVB/NJ m 159690.0 0.0   1   0.0 0.0 159690.0, 159690.0 0.28
I/LnJ m 203099.0 0.0   1   0.0 0.0 203099.0, 203099.0 0.93
KK/HlJ m 174444.0 0.0   1   0.0 0.0 174444.0, 174444.0 0.5
LG/J m 120796.0 0.0   1   0.0 0.0 120796.0, 120796.0 -0.3
LP/J m 147578.0 0.0   1   0.0 0.0 147578.0, 147578.0 0.1
MA/MyJ m 99215.0 0.0   1   0.0 0.0 99215.0, 99215.0 -0.62
NOD/ShiLtJ m 167707.0 0.0   1   0.0 0.0 167707.0, 167707.0 0.4
NON/ShiLtJ m 142840.0 0.0   1   0.0 0.0 142840.0, 142840.0 0.03
NZW/LacJ m 190307.0 0.0   1   0.0 0.0 190307.0, 190307.0 0.74
PL/J m 166981.0 0.0   1   0.0 0.0 166981.0, 166981.0 0.39
RIIIS/J m 148340.0 0.0   1   0.0 0.0 148340.0, 148340.0 0.11
SEA/GnJ m 137678.0 0.0   1   0.0 0.0 137678.0, 137678.0 -0.04
SJL/J m 279469.0 0.0   1   0.0 0.0 279469.0, 279469.0 2.07
SM/J m 39886.0 0.0   1   0.0 0.0 39886.0, 39886.0 -1.5
SWR/J m 146615.0 0.0   1   0.0 0.0 146615.0, 146615.0 0.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 202358.05 37771.0227 279118.0034 125598.0966
AXB19b/PgnJ m 205364.25 37771.0227 282124.2034 128604.2966
AXB24/PgnJ m 198552.6 37771.0227 275312.5534 121792.6466
BALB/cJ m 170976.9 30839.9109 233651.1395 108302.6605
BXA16/PgnJ m 121259.3 37771.0227 198019.2534 44499.3466
BXD19/TyJ m 81707.2 37771.0227 158467.1534 4947.2466
BXD28/TyJ m 68364.7 37771.0227 145124.6534 0.0
BXH4/TyJ m 165126.1 37771.0227 241886.0534 88366.1466
C3H/HeJ m 171718.3 37771.0227 248478.2534 94958.3466
C57BL/6J m 115433.8 23888.4922 163981.0572 66886.5428
CXB11/HiAJ m 214997.35 37771.0227 291757.3034 138237.3966
CXB12/HiAJ m 135714.25 37771.0227 212474.2034 58954.2966
CXB13/HiAJ m 148896.9333 30839.9109 211571.1729 86222.6938
CXB1/ByJ m 122514.6 30839.9109 185188.8395 59840.3605
CXB2/ByJ m 285040.7 30839.9109 347714.9395 222366.4605
CXB3/ByJ m 160211.4 37771.0227 236971.3534 83451.4466
CXB4/ByJ m 142492.1 37771.0227 219252.0534 65732.1466
CXB6/ByJ m 169382.8667 30839.9109 232057.1062 106708.6271
CXB7/ByJ m 296988.65 37771.0227 373748.6034 220228.6966
CXB8/HiAJ m 236198.6333 30839.9109 298872.8729 173524.3938
CXB9/HiAJ m 259274.9 30839.9109 321949.1395 196600.6605
DBA/2J m 81364.475 26708.1463 135641.9586 27086.9914




  GWAS USING LINEAR MIXED MODELS