Project measure / variable:   HMDPpheno10   GGT

ID, description, units MPD:50531   GGT   gamma-glutamylthreonine (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   104 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno10 - gamma-glutamylthreonine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested104 strains
Mean of the strain means95336   None
Median of the strain means86342   None
SD of the strain means± 45183
Coefficient of variation (CV)0.474
Min–max range of strain means19824   –   254595   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 38739338324.4525 1844730396.4025 2.4877 0.0088
Residuals 34 25212190211.423 741535006.2183


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 94812.0 0.0   1   0.0 0.0 94812.0, 94812.0 -0.01
A/J m 105000.0 14846.0   2   10498.0 0.141 94502.0, 115498.0 0.21
AKR/J m 203626.0 0.0   1   0.0 0.0 203626.0, 203626.0 2.4
AXB10/PgnJ m 47925.0 0.0   1   0.0 0.0 47925.0, 47925.0 -1.05
AXB12/PgnJ m 29509.0 0.0   1   0.0 0.0 29509.0, 29509.0 -1.46
AXB13/PgnJ m 82674.0 0.0   1   0.0 0.0 82674.0, 82674.0 -0.28
AXB15/PgnJ m 81620.0 0.0   1   0.0 0.0 81620.0, 81620.0 -0.3
AXB19a/PgnJ m 36831.0 0.0   1   0.0 0.0 36831.0, 36831.0 -1.29
AXB19b/PgnJ m 129226.0 35545.0   2   25134.0 0.275 104092.0, 154360.0 0.75
AXB19/PgnJ m 59016.0 0.0   1   0.0 0.0 59016.0, 59016.0 -0.8
AXB1/PgnJ m 57482.0 0.0   1   0.0 0.0 57482.0, 57482.0 -0.84
AXB23/PgnJ m 87298.0 0.0   1   0.0 0.0 87298.0, 87298.0 -0.18
AXB24/PgnJ m 63080.0 53123.0   2   37564.0 0.842 25516.0, 100644.0 -0.71
AXB2/PgnJ m 101298.0 0.0   1   0.0 0.0 101298.0, 101298.0 0.13
AXB4/PgnJ m 57657.0 0.0   1   0.0 0.0 57657.0, 57657.0 -0.83
AXB5/PgnJ m 68791.0 0.0   1   0.0 0.0 68791.0, 68791.0 -0.59
AXB6/PgnJ m 88139.0 0.0   1   0.0 0.0 88139.0, 88139.0 -0.16
AXB8/PgnJ m 71261.0 0.0   1   0.0 0.0 71261.0, 71261.0 -0.53
BALB/cJ m 99990.0 8027.0   3 4634.0 0.0803 91316.0, 107154.0 0.1
BTBR T+ Itpr3tf/J m 65511.0 0.0   1   0.0 0.0 65511.0, 65511.0 -0.66
BUB/BnJ m 231101.0 0.0   1   0.0 0.0 231101.0, 231101.0 3.0
BXA11/PgnJ m 84972.0 0.0   1   0.0 0.0 84972.0, 84972.0 -0.23
BXA12/PgnJ m 67145.0 0.0   1   0.0 0.0 67145.0, 67145.0 -0.62
BXA13/PgnJ m 152253.0 0.0   1   0.0 0.0 152253.0, 152253.0 1.26
BXA14/PgnJ m 116010.0 0.0   1   0.0 0.0 116010.0, 116010.0 0.46
BXA16/PgnJ m 106688.0 8124.0   2   5744.0 0.0761 100944.0, 112433.0 0.25
BXA1/PgnJ m 58192.0 0.0   1   0.0 0.0 58192.0, 58192.0 -0.82
BXA24/PgnJ m 197210.0 0.0   1   0.0 0.0 197210.0, 197210.0 2.25
BXA25/PgnJ m 35324.0 0.0   1   0.0 0.0 35324.0, 35324.0 -1.33
BXA26/PgnJ m 87599.0 0.0   1   0.0 0.0 87599.0, 87599.0 -0.17
BXA2/PgnJ m 82525.0 0.0   1   0.0 0.0 82525.0, 82525.0 -0.28
BXA4/PgnJ m 53859.0 0.0   1   0.0 0.0 53859.0, 53859.0 -0.92
BXA7/PgnJ m 138409.0 0.0   1   0.0 0.0 138409.0, 138409.0 0.95
BXA8/PgnJ m 76112.0 0.0   1   0.0 0.0 76112.0, 76112.0 -0.43
BXD11/TyJ m 135178.0 0.0   1   0.0 0.0 135178.0, 135178.0 0.88
BXD12/TyJ m 31632.0 0.0   1   0.0 0.0 31632.0, 31632.0 -1.41
BXD13/TyJ m 44291.0 0.0   1   0.0 0.0 44291.0, 44291.0 -1.13
BXD14/TyJ m 19824.0 0.0   1   0.0 0.0 19824.0, 19824.0 -1.67
BXD15/TyJ m 143998.0 0.0   1   0.0 0.0 143998.0, 143998.0 1.08
BXD18/TyJ m 62510.0 0.0   1   0.0 0.0 62510.0, 62510.0 -0.73
BXD19/TyJ m 66921.0 22141.0   2   15656.0 0.331 51265.0, 82577.0 -0.63
BXD1/TyJ m 96636.0 0.0   1   0.0 0.0 96636.0, 96636.0 0.03
BXD20/TyJ m 153624.0 0.0   1   0.0 0.0 153624.0, 153624.0 1.29
BXD21/TyJ m 92316.0 0.0   1   0.0 0.0 92316.0, 92316.0 -0.07
BXD22/TyJ m 124929.0 0.0   1   0.0 0.0 124929.0, 124929.0 0.65
BXD24/TyJ m 106604.0 0.0   1   0.0 0.0 106604.0, 106604.0 0.25
BXD24/TyJ-Cep290rd16/J m 81306.0 0.0   1   0.0 0.0 81306.0, 81306.0 -0.31
BXD28/TyJ m 70360.0 10963.0   2   7752.0 0.156 62608.0, 78111.0 -0.55
BXD29-Tlr4lps-2J/J m 108304.0 0.0   1   0.0 0.0 108304.0, 108304.0 0.29
BXD2/TyJ m 48911.0 0.0   1   0.0 0.0 48911.0, 48911.0 -1.03
BXD32/TyJ m 55056.0 0.0   1   0.0 0.0 55056.0, 55056.0 -0.89
BXD33/TyJ m 80192.0 0.0   1   0.0 0.0 80192.0, 80192.0 -0.34
BXD34/TyJ m 67553.0 0.0   1   0.0 0.0 67553.0, 67553.0 -0.61
BXD36/TyJ m 29127.0 0.0   1   0.0 0.0 29127.0, 29127.0 -1.47
BXD38/TyJ m 82500.0 0.0   1   0.0 0.0 82500.0, 82500.0 -0.28
BXD39/TyJ m 205288.0 0.0   1   0.0 0.0 205288.0, 205288.0 2.43
BXD40/TyJ m 25718.0 0.0   1   0.0 0.0 25718.0, 25718.0 -1.54
BXD42/TyJ m 46702.0 0.0   1   0.0 0.0 46702.0, 46702.0 -1.08
BXD5/TyJ m 133518.0 0.0   1   0.0 0.0 133518.0, 133518.0 0.85
BXD6/TyJ m 72452.0 0.0   1   0.0 0.0 72452.0, 72452.0 -0.51
BXD8/TyJ m 54195.0 0.0   1   0.0 0.0 54195.0, 54195.0 -0.91
BXH10/TyJ m 40254.0 0.0   1   0.0 0.0 40254.0, 40254.0 -1.22
BXH19/TyJ m 110452.0 0.0   1   0.0 0.0 110452.0, 110452.0 0.33
BXH20/KccJ m 107127.0 0.0   1   0.0 0.0 107127.0, 107127.0 0.26
BXH22/KccJ m 83630.0 0.0   1   0.0 0.0 83630.0, 83630.0 -0.26
BXH2/TyJ m 95897.0 0.0   1   0.0 0.0 95897.0, 95897.0 0.01
BXH4/TyJ m 66470.0 10477.0   2   7408.0 0.158 59062.0, 73879.0 -0.64
BXH6/TyJ m 80456.0 0.0   1   0.0 0.0 80456.0, 80456.0 -0.33
BXH7/TyJ m 52450.0 0.0   1   0.0 0.0 52450.0, 52450.0 -0.95
BXH8/TyJ m 91645.0 0.0   1   0.0 0.0 91645.0, 91645.0 -0.08
BXH9/TyJ m 74266.0 0.0   1   0.0 0.0 74266.0, 74266.0 -0.47
C3H/HeJ m 109727.0 52211.0   2   36919.0 0.476 72808.0, 146646.0 0.32
C57BL/6J m 77255.0 24291.0   5 10863.0 0.314 57787.0, 114044.0 -0.4
C57L/J m 88468.0 0.0   1   0.0 0.0 88468.0, 88468.0 -0.15
C58/J m 254595.0 0.0   1   0.0 0.0 254595.0, 254595.0 3.52
CAST/EiJ m 63575.0 0.0   1   0.0 0.0 63575.0, 63575.0 -0.7
CBA/J m 122898.0 0.0   1   0.0 0.0 122898.0, 122898.0 0.61
CE/J m 63209.0 0.0   1   0.0 0.0 63209.0, 63209.0 -0.71
CXB11/HiAJ m 59809.0 27952.0   2   19765.0 0.467 40044.0, 79575.0 -0.79
CXB12/HiAJ m 96563.0 1441.0   2   1019.0 0.0149 95545.0, 97582.0 0.03
CXB13/HiAJ m 76404.0 28276.0   3 16325.0 0.37 45938.0, 101806.0 -0.42
CXB1/ByJ m 73419.0 8891.0   3 5133.0 0.121 67605.0, 83654.0 -0.49
CXB2/ByJ m 114567.0 12240.0   3 7067.0 0.107 100513.0, 122886.0 0.43
CXB3/ByJ m 95487.0 1891.0   2   1337.0 0.0198 94150.0, 96824.0 0.0
CXB4/ByJ m 83539.0 24626.0   2   17413.0 0.295 66126.0, 100952.0 -0.26
CXB6/ByJ m 112215.0 19259.0   3 11119.0 0.172 92185.0, 130596.0 0.37
CXB7/ByJ m 150571.0 51650.0   2   36522.0 0.343 114049.0, 187093.0 1.22
CXB8/HiAJ m 106653.0 19414.0   3 11209.0 0.182 85040.0, 122613.0 0.25
CXB9/HiAJ m 162349.0 57051.0   3 32939.0 0.351 108623.0, 222227.0 1.48
DBA/2J m 102658.0 16143.0   4 8071.0 0.157 87570.0, 118246.0 0.16
FVB/NJ m 90925.0 0.0   1   0.0 0.0 90925.0, 90925.0 -0.1
I/LnJ m 196283.0 0.0   1   0.0 0.0 196283.0, 196283.0 2.23
KK/HlJ m 104554.0 0.0   1   0.0 0.0 104554.0, 104554.0 0.2
LG/J m 69880.0 0.0   1   0.0 0.0 69880.0, 69880.0 -0.56
LP/J m 85387.0 0.0   1   0.0 0.0 85387.0, 85387.0 -0.22
MA/MyJ m 138826.0 0.0   1   0.0 0.0 138826.0, 138826.0 0.96
NOD/ShiLtJ m 147334.0 0.0   1   0.0 0.0 147334.0, 147334.0 1.15
NON/ShiLtJ m 142958.0 0.0   1   0.0 0.0 142958.0, 142958.0 1.05
NZW/LacJ m 211203.0 0.0   1   0.0 0.0 211203.0, 211203.0 2.56
PL/J m 104416.0 0.0   1   0.0 0.0 104416.0, 104416.0 0.2
SEA/GnJ m 83418.0 0.0   1   0.0 0.0 83418.0, 83418.0 -0.26
SJL/J m 137818.0 0.0   1   0.0 0.0 137818.0, 137818.0 0.94
SM/J m 97498.0 0.0   1   0.0 0.0 97498.0, 97498.0 0.05
SWR/J m 130075.0 0.0   1   0.0 0.0 130075.0, 130075.0 0.77


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 105000.25 19255.324 144131.7765 65868.7235
AXB19b/PgnJ m 129226.0 19255.324 168357.5265 90094.4735
AXB24/PgnJ m 63079.95 19255.324 102211.4765 23948.4235
BALB/cJ m 99989.5667 15721.9062 131940.3243 68038.8091
BXA16/PgnJ m 106688.2 19255.324 145819.7265 67556.6735
BXD19/TyJ m 66920.95 19255.324 106052.4765 27789.4235
BXD28/TyJ m 70359.5 19255.324 109491.0265 31227.9735
BXH4/TyJ m 66470.45 19255.324 105601.9765 27338.9235
C3H/HeJ m 109726.6 19255.324 148858.1265 70595.0735
C57BL/6J m 77255.08 12178.1362 102004.0304 52506.1296
CXB11/HiAJ m 59809.45 19255.324 98940.9765 20677.9235
CXB12/HiAJ m 96563.45 19255.324 135694.9765 57431.9235
CXB13/HiAJ m 76404.0667 15721.9062 108354.8243 44453.3091
CXB1/ByJ m 73418.6333 15721.9062 105369.3909 41467.8757
CXB2/ByJ m 114567.3333 15721.9062 146518.0909 82616.5757
CXB3/ByJ m 95486.95 19255.324 134618.4765 56355.4235
CXB4/ByJ m 83538.7 19255.324 122670.2265 44407.1735
CXB6/ByJ m 112214.9 15721.9062 144165.6576 80264.1424
CXB7/ByJ m 150571.0 19255.324 189702.5265 111439.4735
CXB8/HiAJ m 106653.3667 15721.9062 138604.1243 74702.6091
CXB9/HiAJ m 162349.2667 15721.9062 194300.0243 130398.5091
DBA/2J m 102657.6 13615.5702 130327.7678 74987.4322




  GWAS USING LINEAR MIXED MODELS