MPD: Phenotype measures mapped to VT:0002109, limb morphology trait

Phenotype measures associated with ontology term
VT:0002109 'limb morphology trait'

All measures in this list are mapped to the ontology descendants of VT:0002109. None are mapped to VT:0002109 directly.

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Auwerx1:233	Auwerx1	organ weights	high-fat diet	soleus muscle weight [g] soleus_wt 111412 CD HFD	BXD w/par	57	m	29wks	N=4	2016

Beamer1:1	Beamer1	computed tomography	(none)	femur, average bone volume (total, mid diaphysis) [g/cm³] femur_mid_cort_vol 10501	QTL population		f	20wks	N=711	1999

Beamer1:2	Beamer1	computed tomography	(none)	femur, average cortical bone volume (mid-diaphysis) [g/cm³] femur_mid_tot_vol 10502	QTL population		f	20wks	N=711	1999

Beamer2:6	Beamer2	computed tomography	(none)	femur, average bone volume (total, mid-diaphysis) [g/cm³] femur_mid_tot_vol 11206	QTL population		f	16wks	N=999	2001

Beamer2:7	Beamer2	computed tomography	(none)	femur, average cortical bone volume, mid-diaphysis [g/cm³] femur_mid_cort_vol 11207	QTL population		f	16wks	N=999	2001

Beamer2:8	Beamer2	computed tomography	(none)	femur, percentage of total volume that is cortical bone [%] femur_pct_cort 11208	QTL population		f	16wks	N=999	2001

Beamer2:9	Beamer2	computed tomography	(none)	femur, surface area to tissue volume (index) [ratio] femur_ratio 11209	QTL population		f	16wks	N=999	2001

Beamer2:10	Beamer2	computed tomography	(none)	femur, length, condyles to rostral tip of greater trochanter [mm] femur_length 11210	QTL population		f	16wks	N=999	2001

Beamer2:11	Beamer2	computed tomography	(none)	femur, average cortical thickness, mid-diaphysis [mm] femur_thickness 11211	QTL population		f	16wks	N=999	2001

Beamer2:12	Beamer2	computed tomography	(none)	femur, medial to lateral width, mid-diaphysis [mm] femur_ML 11212	QTL population		f	16wks	N=999	2001

Beamer2:13	Beamer2	computed tomography	(none)	femur, anterior to posterior width, rostral to caudal, mid-diaphysis [mm] femur_AP 11213	QTL population		f	16wks	N=999	2001

Beamer2:14	Beamer2	computed tomography	(none)	femur, ratio of medial-lateral (ML) to anterior-posterior (AP) [ratio] femur_ML_AP 11214	QTL population		f	16wks	N=999	2001

Brockmann1:8	Brockmann1	muscle weights	(none)	muscle weight [mg] Mw 21308	QTL population		both	6wks	N=138	2009

Brockmann1:25	Brockmann1	muscle weights	(none)	muscle weight [mg] mw 21505	QTL population		both	6wks	N=201	2009

Burke1:1	Burke1	computed tomography	(none)	right femur length [mm] Femur_length 26301	QTL population		f	80wks	N=505	2012

Burke1:21	Burke1	computed tomography	(none)	right femur length [mm] Femur_length_b 26801	QTL population		f	80wks	N=832	2012

Chesler3:90	Chesler3	bone dimensions	(none)	periosteal (outer) circumference, femoral mid-diaphysis [mm] bone_circumference 43590	CC pre w/par	235	both	7-15wks	N=1	2011

Churchill1:9	Churchill1	muscle weights	(none)	weight of isolated quadriceps muscle [g] quadricep_wt 17109	F1 8way	63	both	7-8wks	N=5	2004

Donahue2:13	Donahue2	bone dimensions	(none)	length of right femur, condyles to rostral tip of greater trochanter [mm] femur_length 17213	inbred	10	both	16wks	N=10	2004

Donahue2:14	Donahue2	bone dimensions	(none)	anterior to posterior, rostral to caudal, width of right femur, mid-diaphysis [mm] femur_width_AP 17214	inbred	10	both	16wks	N=10	2004

Donahue2:15	Donahue2	bone dimensions	(none)	medial to lateral width of right femur, mid-diaphysis [mm] femur_width_ML 17215	inbred	10	both	16wks	N=10	2004

Donahue2:16	Donahue2	computed tomography	(none)	cross sectional bone area, whole thigh area minus muscle area, femoral mid-diaphysis [mm²] femur_area 17216	inbred	10	both	16wks	N=10	2004

Donahue2:17	Donahue2	computed tomography	(none)	cortical thickness of right femur, pQCT [mm] femur_thickness_R1 17217	inbred	10	both	16wks	N=10	2004

Donahue2:18	Donahue2	computed tomography	(none)	cortical thickness of right femur, µCT [mm] femur_thickness_R2 17218	inbred	10	both	16wks	N=10	2004

Donahue2:19	Donahue2	computed tomography	(none)	cortical thickness of left femur, pQCT [mm] femur_thickness_L 17219	inbred	10	both	16wks	N=10	2004

Donahue2:20	Donahue2	computed tomography	(none)	periosteal (outer) circumference, femoral mid-diaphysis [mm] femur_out 17220	inbred	10	both	16wks	N=10	2004

Donahue2:21	Donahue2	computed tomography	(none)	endosteal (inner) circumference, femoral mid-diaphysis [mm] femur_in 17221	inbred	10	both	16wks	N=10	2004

Donahue2:24	Donahue2	muscle weights	(none)	weight of isolated right quadriceps muscle [g] quadricep_wt 17224	inbred	10	both	16wks	N=10	2004

GMC21:2	GMC21	bone dimensions	(none)	tibia length [mm] tibia_length 57002	inbred w/CC8	8	both	21wks	N=11	2018

JaxKOMP-EAP:65	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimbs position forelimbs_position 100359 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:66	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimbs size forelimbs_size 100360 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:67	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimb footpads forelimb_footpads 100361 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:68	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimbs position hindlimbs_position 100362 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:69	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimbs shape hindlimbs_shape 100363 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:70	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimbs footpads hindlimbs_footpad 100364 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:79	JaxKOMP-EAP	observation (SHIRPA)	(none)	forepaw size forepaw_size 100373 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:80	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindpaw size hindpaw_size 100374 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:81	JaxKOMP-EAP	observation (SHIRPA)	(none)	forepaw shape forepaw_shape 100375 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:82	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindpaw shape hindpaw_shape 100376 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:83	JaxKOMP-EAP	observation (SHIRPA)	(none)	forepaw position forepaw_position 100377 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:84	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindpaw position hindpaw_position 100378 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:85	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimb digit number forelimb_digit_num forelimb_digit_number 100379 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:86	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimb digit number hindlimb_digit_num hindlimb_digit_number 100380 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:87	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimb digit size forelimb_digit_size 100381 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:88	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimb digit size hindlimb_digit_size 100382 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:89	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimb digit shape forelimb_digit_shape 100383 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:90	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimb digit shape hindlimb_digit_shape 100384 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:91	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimb digit position forelimb_digit_position 100385 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:123	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimbs shape forelimbs_shape 100417 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:124	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimbs size hindlimbs_size 100418 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:311	JaxKOMP-EAP	X-ray	(none)	brachydactyly brachydactyly 100639 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:314	JaxKOMP-EAP	X-ray	(none)	digit integrity digit_integrity 100644 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:327	JaxKOMP-EAP	X-ray	(none)	number of digits digits_num number_of_digits 100659	KOMP	753	both	14wks	N=4	2017

JaxKOMP-EAP:334	JaxKOMP-EAP	X-ray	(none)	polysyndactylism polysyndactylism 100666 categorical	KOMP	18	both	14wks		2017

JaxKOMP-EAP:336	JaxKOMP-EAP	X-ray	(none)	radius radius 100668 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:343	JaxKOMP-EAP	X-ray	(none)	syndactylism syndactylism 100677 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:345	JaxKOMP-EAP	X-ray	(none)	tibia tibia 100680 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:347	JaxKOMP-EAP	X-ray	(none)	ulna ulna 100683 categorical	KOMP	76	both	14wks		2017

JaxKOMP-LAP:54	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimbs position forelimbs_position 101359 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:55	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimbs size forelimbs_size 101360 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:56	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb footpads forelimb_footpads 101361 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:57	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimbs position hindlimbs_position 101362 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:58	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimbs shape hindlimbs_shape 101363 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:59	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimbs footpads hindlimbs_footpad 101364 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:68	JaxKOMP-LAP	observation (SHIRPA)	(none)	forepaw size forepaw_size 101373 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:69	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindpaw size hindpaw_size 101374 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:70	JaxKOMP-LAP	observation (SHIRPA)	(none)	forepaw shape forepaw_shape 101375 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:71	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindpaw shape hindpaw_shape 101376 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:72	JaxKOMP-LAP	observation (SHIRPA)	(none)	forepaw position forepaw_position 101377 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:73	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindpaw position hindpaw_position 101378 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:74	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb digit number forelimb_digit_number 101379 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:75	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb digit number hindlimb_digit_number 101380 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:76	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb digit size forelimb_digit_size 101381 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:77	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb digit size hindlimb_digit_size 101382 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:78	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb digit shape forelimb_digit_shape 101383 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:79	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb digit shape hindlimb_digit_shape 101384 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:80	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb digit position forelimb_digit_position 101385 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:112	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimbs shape forelimbs_shape 101417 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:113	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimbs size hindlimbs_size 101418 categorical	KOMP	148	both	66-72wks		2021

Jaxpheno7:5	Jaxpheno7	observation (SHIRPA)	(none)	hindlimb splay evaluation via dorso-ventral view in arena (score 0-2) [score] hindlimb_dorsal 34905	inbred	6	m	10wks	N=8	2010

Jaxpheno7:6	Jaxpheno7	observation (SHIRPA)	(none)	hindlimb splay evaluation via vertical view in arena (score 0-2) [score] limb_pattern 34906	inbred	6	m	10wks	N=8	2010

Lake2:43	Lake2	observation (SHIRPA)	(none)	hindlimb splay evaluation via dorso-ventral view in arena (score 0-2) [score] hindlimb_dorsal 21743	B6.A consomic w/par	23	both	8wks	N=8	2005

Lake2:44	Lake2	observation (SHIRPA)	(none)	distance between ankle joints during tail suspension (score 0-2) [score] hindlimb_susp 21744	B6.A consomic w/par	23	both	8wks	N=8	2005

Levy1:3	Levy1	computed tomography	(none)	femur length [mm] femur_length 54903	CC pre	31	both	8-14wks	N=3	2015

Levy1:4	Levy1	computed tomography	(none)	trabecular bone volume fraction of femur (BVTV) [%] Tb_volume 54904	CC pre	31	both	8-14wks	N=3	2015

Levy1:5	Levy1	computed tomography	(none)	trabecular bone connectivity density of femur (Conn.D) [mm^-3] Tb_connectivity 54905	CC pre	31	both	8-14wks	N=3	2015

Levy1:6	Levy1	computed tomography	(none)	trabecular bone number of femur (Tb.N) [mm^-1] Tb_number 54906	CC pre	31	both	8-14wks	N=3	2015

Levy1:7	Levy1	computed tomography	(none)	trabecular bone thickness of femur (Tb.Th) [µm] Tb_thickness 54907	CC pre	31	both	8-14wks	N=3	2015

Lionikas1:10	Lionikas1	bone dimensions	exercise	length of femur [mm] femur 48510 control exercise	inbred	6	m	11-14wks	N=15	2012

Lionikas1:11	Lionikas1	muscle weights	exercise	weight of tibialis anterior muscle [g] tibialis 48511 control exercise	inbred	6	m	11-14wks	N=15	2012

Lionikas1:12	Lionikas1	muscle weights	exercise	weight of extensor digitorum longus muscle [g] extensor 48512 control exercise	inbred	6	m	11-14wks	N=15	2012

Lionikas1:13	Lionikas1	muscle weights	exercise	weight of gastrocnemius muscle [g] gastrocnemius 48513 control exercise	inbred	6	m	11-14wks	N=15	2012

Lionikas1:14	Lionikas1	muscle weights	exercise	weight of quadriceps femoris muscle [g] quadriceps 48514 control exercise	inbred	6	m	11-14wks	N=15	2012

Lionikas1:15	Lionikas1	muscle weights	exercise	weight of soleus muscle [g] soleus 48515 control exercise	inbred	6	m	11-14wks	N=15	2012

Lionikas1:16	Lionikas1	microscopy	exercise	cross-sectional area of type I fibers of soleus muscle [µm²] soleus_area1 48516 control exercise	inbred	6	m	11-14wks	N=6	2012

Lionikas1:17	Lionikas1	microscopy	exercise	cross-sectional area of type IIa fibers of soleus muscle [µm²] soleus_area2A 48517 control exercise	inbred	6	m	11-14wks	N=6	2012

Lionikas1:18	Lionikas1	microscopy	exercise	total number of fibers of soleus muscle [n] soleus_fibers 48518 control exercise	inbred	6	m	11-14wks	N=6	2012

Lionikas1:19	Lionikas1	microscopy	exercise	number of type I fibers of soleus muscle [n] soleus_fibers1 48519 control exercise	inbred	6	m	11-14wks	N=6	2012

Lionikas1:20	Lionikas1	microscopy	exercise	number of type IIa fibers of soleus muscle [n] soleus_fibers2A 48520 control exercise	inbred	6	m	11-14wks	N=6	2012

Lionikas1:21	Lionikas1	microscopy	exercise	number of intermediate fibers of soleus muscle [n] soleus_intermediate 48521 control exercise	inbred	6	m	11-14wks	N=6	2012

Schoonjans1:230	Schoonjans1	organ weights	high-fat diet	gastrocnemius muscle weight [g] gastroc_wt 112865 CD HFD	BXD w/par	35	m	29wks	N=5	2021

Schoonjans1:232	Schoonjans1	organ weights	high-fat diet	soleus muscle weight [g] soleus_wt 112867 CD HFD	BXD w/par	35	m	29wks	N=5	2021

Seburn2:5	Seburn2	gait analysis	(none)	stance phase, mean time that either front paw is in contact with surface during a step [ms] stance_F 24805 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:9	Seburn2	gait analysis	(none)	swing phase, mean time that either front paw is not in contact with the surface during a step [ms] swing_F 24809 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:13	Seburn2	gait analysis	(none)	stride time, mean time between consecutive front paw contacts [ms] stride_F 24813 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:17	Seburn2	gait analysis	(none)	stance-to-stride ratio, mean for front paws [ratio] stance_stride_F 24817 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:21	Seburn2	gait analysis	(none)	swing-to-stride ratio, mean for front paws [ratio] swing_stride_F 24821 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:25	Seburn2	gait analysis	(none)	stride length, mean distance between consecutive front paw contacts [mm] stride_length_F 24825 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:33	Seburn2	gait analysis	(none)	front track width, mean distance between front paws at midpoint of stance phase [mm] track_width_F 24833 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:39	Seburn2	gait analysis	(none)	stride frequency, mean number of steps per second for front paws [Hz] stride_freq_F 24839 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:45	Seburn2	gait analysis	(none)	stance phase, mean time that either rear paw is in contact with surface during a step [ms] stance_R 24845 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:49	Seburn2	gait analysis	(none)	swing phase, mean time that either rear paw is not in contact with the surface during a step [ms] swing_R 24849 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:53	Seburn2	gait analysis	(none)	stride time, mean time between consecutive rear paw contacts [ms] stride_R 24853 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:57	Seburn2	gait analysis	(none)	stance-to-stride ratio, mean for rear paws [ratio] stance_stride_R 24857 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:61	Seburn2	gait analysis	(none)	swing-to-stride ratio, mean for rear paws [ratio] swing_stride_R 24861 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:65	Seburn2	gait analysis	(none)	stride length, mean distance between consecutive rear paw contacts [mm] stride_length_R 24865 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:73	Seburn2	gait analysis	(none)	front track width, mean distance between rear paws at midpoint of stance phase [mm] rear_track_width_R 24873 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:79	Seburn2	gait analysis	(none)	stride frequency, mean number of steps per second for rear paws [Hz] stride_freq_R 24879 6mo 18mo	inbred	7	both		N=6	2008

Wergedal1:3	Wergedal1	DXA	(none)	cortical thickness [mm] CrtThk 18903	QTL population		f	10wks	N=661	2006

Xing2:4	Xing2	gait analysis	(none)	gait score (1-3) [score] gait_score 36304 6mo 12mo 18mo	inbred	31	both		N=7	2010

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