Project measure / variable:   GMC21   tibia_length

ID, description, units MPD:57002   tibia_length   tibia length   [mm]  
Data set, strains GMC21   inbred w/CC8   8 strains     sex: both     age: 21wks
Procedure bone dimensions
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  STRAIN COMPARISON PLOT
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GMC21 - tibia length



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means17.849   mm 18.087   mm
Median of the strain means18.169   mm 18.414   mm
SD of the strain means± 1.0867 ± 0.90734
Coefficient of variation (CV)0.0609 0.0502
Min–max range of strain means16.241   –   19.205   mm 16.504   –   18.938   mm
Mean sample size per strain10.4   mice 11.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.1629 3.1629 3.6157 0.059
strain 7 145.6935 20.8134 23.7934 < 0.0001
sex:strain 7 5.3796 0.7685 0.8785 0.5248
Residuals 162 141.7102 0.8748


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 19.205 0.85391   10 0.27003 0.0445 17.49, 20.61 1.25
129S1/SvImJ m 18.592 1.0215   12 0.29488 0.0549 17.1, 20.05 0.56
A/J f 17.89 0.87639   10 0.27714 0.049 16.32, 19.16 0.04
A/J m 18.237 0.99049   12 0.28593 0.0543 16.81, 19.9 0.17
C57BL/6J f 18.853 0.44644   10 0.14118 0.0237 18.01, 19.49 0.92
C57BL/6J m 18.938 1.0252   12 0.29596 0.0541 16.13, 19.9 0.94
CAST/EiJ f 17.012 1.0031   12 0.28956 0.059 14.6, 18.01 -0.77
CAST/EiJ m 17.532 1.042   12 0.3008 0.0594 15.49, 19.16 -0.61
NOD/ShiLtJ f 18.472 0.74663   11 0.22512 0.0404 17.67, 20.04 0.57
NOD/ShiLtJ m 18.789 0.96678   12 0.27909 0.0515 17.73, 20.6 0.77
NZO/HlLtJ f 18.447 0.83297   10 0.26341 0.0452 16.55, 19.48 0.55
NZO/HlLtJ m 18.903 0.7081   12 0.20441 0.0375 17.43, 20.05 0.9
PWK/PhJ f 16.241 1.169   10 0.36967 0.072 14.53, 17.33 -1.48
PWK/PhJ m 16.504 0.93159   11 0.28089 0.0564 15.06, 18.06 -1.74
WSB/EiJ f 16.672 1.3057   10 0.4129 0.0783 14.33, 18.46 -1.08
WSB/EiJ m 17.199 0.7174   12 0.2071 0.0417 15.66, 18.27 -0.98


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 19.205 0.2958 19.789 18.621
129S1/SvImJ m 18.5917 0.27 19.1248 18.0585
A/J f 17.89 0.2958 18.474 17.306
A/J m 18.2367 0.27 18.7698 17.7035
C57BL/6J f 18.853 0.2958 19.437 18.269
C57BL/6J m 18.9383 0.27 19.4715 18.4052
CAST/EiJ f 17.0117 0.27 17.5448 16.4785
CAST/EiJ m 17.5325 0.27 18.0657 16.9993
NOD/ShiLtJ f 18.4718 0.282 19.0287 17.915
NOD/ShiLtJ m 18.7892 0.27 19.3223 18.256
NZO/HlLtJ f 18.447 0.2958 19.031 17.863
NZO/HlLtJ m 18.9033 0.27 19.4365 18.3702
PWK/PhJ f 16.241 0.2958 16.825 15.657
PWK/PhJ m 16.5036 0.282 17.0605 15.9468
WSB/EiJ f 16.672 0.2958 17.256 16.088
WSB/EiJ m 17.1992 0.27 17.7323 16.666


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 18.8983 0.2002 19.2937 18.5029
A/J both 18.0633 0.2002 18.4587 17.6679
C57BL/6J both 18.8957 0.2002 19.2911 18.5003
CAST/EiJ both 17.2721 0.1909 17.6491 16.8951
NOD/ShiLtJ both 18.6305 0.1952 19.016 18.245
NZO/HlLtJ both 18.6752 0.2002 19.0706 18.2798
PWK/PhJ both 16.3723 0.2043 16.7758 15.9688
WSB/EiJ both 16.9356 0.2002 17.331 16.5402




  GWAS USING LINEAR MIXED MODELS