Phenotype measure:   Levy1   femur_length

ID, description, units MPD:54903   femur_length   femur length   [mm]
Data set, strains Levy1   CC pre   27 strains     sex: both     age: 8-14wks
Procedure computed tomography
Ontology mappings

  STRAIN COMPARISON PLOT
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Levy1 - femur length



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested24 strains27 strains
Mean of the strain means14.7   mm 14.8   mm
Median of the strain means14.6   mm 14.9   mm
SD of the strain means± 0.457 ± 0.647
Coefficient of variation (CV)0.0312 0.0437
Min–max range of strain means13.7   –   15.6   mm 13.4   –   16.0   mm
Mean sample size per strain3.0   mice 3.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0418 0.0418 0.1006 0.7519
strain 16 17.5659 1.0979 2.6438 0.002
sex:strain 16 8.526 0.5329 1.2833 0.226
Residuals 88 36.5424 0.4153


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
PreCC1061/Tau f 15.2 0.219   2   0.155 0.0144 15.0, 15.3 1.17
PreCC111/Tau f 14.6 0.942   5 0.421 0.0647 13.3, 15.5 -0.15
PreCC111/Tau m 14.6 0.81   4 0.405 0.0555 13.6, 15.4 -0.33
PreCC1156/Tau m 14.9 0.0   2   0.0 0.0 14.9, 14.9 0.13
PreCC1379/Tau m 15.3 0.0   1   0.0 0.0 15.3, 15.3 0.75
PreCC1452/Tau m 15.9 0.0   1   0.0 0.0 15.9, 15.9 1.68
PreCC1513/Tau f 14.9 0.469   4 0.234 0.0314 14.3, 15.4 0.51
PreCC1513/Tau m 13.4 0.286   3 0.165 0.0213 13.3, 13.8 -2.19
PreCC188/Tau f 15.2 0.679   2   0.48 0.0447 14.7, 15.7 1.17
PreCC188/Tau m 15.2 0.338   7 0.128 0.0222 14.7, 15.7 0.6
PreCC1912/Tau f 14.7 0.106   2   0.075 0.00723 14.6, 14.8 0.07
PreCC1912/Tau m 14.2 1.12   4 0.56 0.0789 13.4, 15.8 -0.95
PreCC2126/Tau f 14.3 0.466   4 0.233 0.0325 13.7, 14.7 -0.8
PreCC2126/Tau m 14.8 0.764   2   0.54 0.0515 14.3, 15.4 -0.02
PreCC2156/Tau f 14.3 0.741   3 0.428 0.0517 13.6, 15.1 -0.8
PreCC2156/Tau m 14.8 0.457   5 0.204 0.0309 14.4, 15.4 -0.02
PreCC2391/Tau m 14.3 0.0   2   0.0 0.0 14.3, 14.3 -0.8
PreCC2438/Tau f 15.3 0.0   1   0.0 0.0 15.3, 15.3 1.38
PreCC2573/Tau m 15.3 0.219   3 0.127 0.0143 15.0, 15.4 0.75
PreCC2680/Tau f 14.1 0.382   2   0.27 0.0272 13.8, 14.3 -1.24
PreCC2680/Tau m 15.1 0.534   5 0.239 0.0353 14.4, 15.6 0.44
PreCC2689/Tau f 15.0 0.394   4 0.197 0.0263 14.7, 15.4 0.73
PreCC2689/Tau m 15.1 0.608   2   0.43 0.0402 14.7, 15.5 0.44
PreCC2750/Tau f 15.0 0.0   2   0.0 0.0 15.0, 15.0 0.73
PreCC2750/Tau m 15.1 0.116   3 0.0669 0.00767 15.0, 15.2 0.44
PreCC3348/Tau f 14.6 0.0   1   0.0 0.0 14.6, 14.6 -0.15
PreCC3348/Tau m 15.1 0.452   6 0.185 0.0299 14.3, 15.6 0.44
PreCC3438/Tau f 14.8 0.106   2   0.075 0.00719 14.7, 14.8 0.29
PreCC3438/Tau m 15.1 0.797   3 0.46 0.0526 14.7, 16.1 0.44
PreCC3480/Tau f 15.0 0.163   2   0.115 0.0109 14.9, 15.1 0.73
PreCC3480/Tau m 13.6 0.0   1   0.0 0.0 13.6, 13.6 -1.88
PreCC3912/Tau f 14.6 0.66   5 0.295 0.0451 13.6, 15.4 -0.15
PreCC3912/Tau m 14.7 0.46   5 0.206 0.0313 14.2, 15.3 -0.18
PreCC4052/Tau f 14.4 0.367   7 0.139 0.0254 14.1, 15.0 -0.58
PreCC4052/Tau m 14.7 0.628   5 0.281 0.0427 14.3, 15.8 -0.18
PreCC4141/Tau f 14.9 1.04   3 0.6 0.0696 13.7, 15.5 0.51
PreCC4141/Tau m 14.4 1.07   3 0.621 0.0744 13.7, 15.7 -0.64
PreCC4438/Tau f 14.0 0.615   3 0.355 0.0439 13.4, 14.6 -1.46
PreCC4457/Tau f 15.6 0.255   4 0.127 0.0163 15.5, 16.0 2.04
PreCC4457/Tau m 15.6 0.0   3 0.0 0.0 15.6, 15.6 1.21
PreCC519/Tau f 14.6 0.188   4 0.0939 0.0128 14.3, 14.8 -0.15
PreCC519/Tau m 13.7 0.523   2   0.37 0.0382 13.3, 14.1 -1.72
PreCC521/Tau f 13.7 1.12   3 0.649 0.082 13.0, 15.0 -2.11
PreCC521/Tau m 14.1 1.28   4 0.639 0.0906 13.3, 16.0 -1.11
PreCC557/Tau f 14.2 0.201   4 0.1 0.0141 14.0, 14.5 -1.02
PreCC611/Tau m 16.0 0.454   3 0.262 0.0283 15.6, 16.5 1.83
PreCC670/Tau m 14.9 0.515   3 0.297 0.0346 14.4, 15.4 0.13
PreCC711/Tau f 14.2 0.672   2   0.475 0.0474 13.7, 14.7 -1.02
PreCC711/Tau m 15.5 0.0   1   0.0 0.0 15.5, 15.5 1.06
PreCC72/Tau f 14.8 0.429   3 0.248 0.029 14.4, 15.2 0.29
PreCC72/Tau m 14.6 0.661   3 0.381 0.0452 13.9, 15.2 -0.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
PreCC111/Tau f 14.562 0.2882 15.1347 13.9893
PreCC111/Tau m 14.6 0.3222 15.2403 13.9597
PreCC1513/Tau f 14.91 0.3222 15.5503 14.2697
PreCC1513/Tau m 13.44 0.372 14.1794 12.7006
PreCC188/Tau f 15.19 0.4557 16.0955 14.2845
PreCC188/Tau m 15.2157 0.2436 15.6997 14.7317
PreCC1912/Tau f 14.675 0.4557 15.5805 13.7695
PreCC1912/Tau m 14.175 0.3222 14.8153 13.5347
PreCC2126/Tau f 14.3375 0.3222 14.9778 13.6972
PreCC2126/Tau m 14.82 0.4557 15.7255 13.9145
PreCC2156/Tau f 14.3333 0.372 15.0727 13.594
PreCC2156/Tau m 14.786 0.2882 15.3587 14.2133
PreCC2680/Tau f 14.06 0.4557 14.9655 13.1545
PreCC2680/Tau m 15.1 0.2882 15.6727 14.5273
PreCC2689/Tau f 15.0175 0.3222 15.6578 14.3772
PreCC2689/Tau m 15.11 0.4557 16.0155 14.2045
PreCC2750/Tau f 14.98 0.4557 15.8855 14.0745
PreCC2750/Tau m 15.1033 0.372 15.8427 14.364
PreCC3438/Tau f 14.755 0.4557 15.6605 13.8495
PreCC3438/Tau m 15.14 0.372 15.8794 14.4006
PreCC3912/Tau f 14.614 0.2882 15.1867 14.0413
PreCC3912/Tau m 14.67 0.2882 15.2427 14.0973
PreCC4052/Tau f 14.4429 0.2436 14.9269 13.9588
PreCC4052/Tau m 14.728 0.2882 15.3007 14.1553
PreCC4141/Tau f 14.94 0.372 15.6794 14.2006
PreCC4141/Tau m 14.4467 0.372 15.186 13.7073
PreCC4457/Tau f 15.6275 0.3222 16.2678 14.9872
PreCC4457/Tau m 15.57 0.372 16.3094 14.8306
PreCC519/Tau f 14.625 0.3222 15.2653 13.9847
PreCC519/Tau m 13.71 0.4557 14.6155 12.8045
PreCC521/Tau f 13.7033 0.372 14.4427 12.964
PreCC521/Tau m 14.0975 0.3222 14.7378 13.4572
PreCC72/Tau f 14.78 0.372 15.5194 14.0406
PreCC72/Tau m 14.62 0.372 15.3594 13.8806


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
PreCC111/Tau both 14.581 0.2161 15.0105 14.1515
PreCC1513/Tau both 14.175 0.2461 14.664 13.686
PreCC188/Tau both 15.2029 0.2583 15.7162 14.6895
PreCC1912/Tau both 14.425 0.279 14.9795 13.8705
PreCC2126/Tau both 14.5788 0.279 15.1333 14.0242
PreCC2156/Tau both 14.5597 0.2353 15.0273 14.0921
PreCC2680/Tau both 14.58 0.2696 15.1157 14.0443
PreCC2689/Tau both 15.0638 0.279 15.6183 14.5092
PreCC2750/Tau both 15.0417 0.2941 15.6262 14.4571
PreCC3438/Tau both 14.9475 0.2941 15.532 14.363
PreCC3912/Tau both 14.642 0.2038 15.047 14.237
PreCC4052/Tau both 14.5854 0.1887 14.9604 14.2105
PreCC4141/Tau both 14.6933 0.2631 15.2161 14.1705
PreCC4457/Tau both 15.5988 0.2461 16.0878 15.1097
PreCC519/Tau both 14.1675 0.279 14.722 13.613
PreCC521/Tau both 13.9004 0.2461 14.3895 13.4114
PreCC72/Tau both 14.7 0.2631 15.2228 14.1772




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA