Project measure / variable:   Donahue2   femur_length

ID, description, units MPD:17213   femur_length   length of right femur, condyles to rostral tip of greater trochanter   [mm]  
Data set, strains Donahue2   inbred   10 strains     sex: both     age: 16wks
Procedure bone dimensions
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  STRAIN COMPARISON PLOT
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Donahue2 - length of right femur, condyles to rostral tip of greater trochanter



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means15.2   mm 15.4   mm
Median of the strain means15.2   mm 15.6   mm
SD of the strain means± 0.732 ± 0.812
Coefficient of variation (CV)0.0482 0.0527
Min–max range of strain means14.1   –   16.5   mm 13.9   –   16.7   mm
Mean sample size per strain10.0   mice 10.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.0414 4.0414 32.4752 < 0.0001
strain 9 115.6477 12.8497 103.2547 < 0.0001
sex:strain 9 3.927 0.4363 3.5062 0.0005
Residuals 191 23.7694 0.1244


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 15.7 0.378   10 0.119 0.0241 15.0, 16.1 0.7
129S1/SvImJ m 15.7 0.402   15 0.104 0.0256 15.2, 16.5 0.34
BALB/cJ f 15.7 0.481   10 0.152 0.0308 14.8, 16.2 0.7
BALB/cJ m 15.8 0.372   10 0.118 0.0236 14.9, 16.1 0.47
C3H/HeJ f 15.1 0.277   9 0.0925 0.0184 14.6, 15.3 -0.12
C3H/HeJ m 15.6 0.161   11 0.0486 0.0103 15.4, 15.9 0.22
C57BL/6J f 15.5 0.379   10 0.12 0.0245 14.9, 16.2 0.42
C57BL/6J m 16.2 0.212   12 0.0613 0.0131 15.9, 16.5 0.96
C58/J f 15.4 0.321   10 0.101 0.0208 15.0, 16.0 0.29
C58/J m 15.4 0.377   10 0.119 0.0245 14.6, 15.9 -0.02
FVB/NJ f 15.1 0.392   11 0.118 0.026 14.1, 15.4 -0.12
FVB/NJ m 15.5 0.291   9 0.0969 0.0188 15.2, 16.0 0.1
NZB/BlNJ f 16.5 0.45   11 0.136 0.0273 15.9, 17.3 1.79
NZB/BlNJ m 16.7 0.337   13 0.0935 0.0202 15.9, 17.2 1.58
PWK/PhJ f 14.1 0.331   12 0.0956 0.0235 13.6, 14.6 -1.49
PWK/PhJ m 13.9 0.53   10 0.167 0.0382 12.8, 14.6 -1.87
SJL/J f 14.4 0.213   8 0.0754 0.0148 14.1, 14.7 -1.08
SJL/J m 14.5 0.311   11 0.0937 0.0214 14.0, 14.9 -1.13
SWR/J f 14.4 0.375   9 0.125 0.0261 13.9, 15.1 -1.08
SWR/J m 14.9 0.177   10 0.0559 0.0119 14.7, 15.2 -0.64


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 15.65 0.1116 15.87 15.43
129S1/SvImJ m 15.72 0.0911 15.8997 15.5403
BALB/cJ f 15.65 0.1116 15.87 15.43
BALB/cJ m 15.76 0.1116 15.98 15.54
C3H/HeJ f 15.0778 0.1176 15.3097 14.8458
C3H/HeJ m 15.6 0.1064 15.8098 15.3902
C57BL/6J f 15.52 0.1116 15.74 15.3
C57BL/6J m 16.2167 0.1018 16.4175 16.0158
C58/J f 15.45 0.1116 15.67 15.23
C58/J m 15.38 0.1116 15.6 15.16
FVB/NJ f 15.0818 0.1064 15.2916 14.872
FVB/NJ m 15.4778 0.1176 15.7097 15.2458
NZB/BlNJ f 16.5091 0.1064 16.7189 16.2993
NZB/BlNJ m 16.7231 0.0978 16.9161 16.5301
PWK/PhJ f 14.0667 0.1018 14.2675 13.8658
PWK/PhJ m 13.86 0.1116 14.08 13.64
SJL/J f 14.4375 0.1247 14.6835 14.1915
SJL/J m 14.5364 0.1064 14.7462 14.3266
SWR/J f 14.3556 0.1176 14.5875 14.1236
SWR/J m 14.87 0.1116 15.09 14.65


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 15.685 0.072 15.827 15.543
BALB/cJ both 15.705 0.0789 15.8606 15.5494
C3H/HeJ both 15.3389 0.0793 15.4953 15.1825
C57BL/6J both 15.8683 0.0755 16.0173 15.7194
C58/J both 15.415 0.0789 15.5706 15.2594
FVB/NJ both 15.2798 0.0793 15.4362 15.1234
NZB/BlNJ both 16.6161 0.0723 16.7586 16.4736
PWK/PhJ both 13.9633 0.0755 14.1123 13.8144
SJL/J both 14.4869 0.082 14.6486 14.3253
SWR/J both 14.6128 0.081 14.7726 14.4529




  GWAS USING LINEAR MIXED MODELS