MPD: Measures involving wild-derived Mishima

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Koide1:1	Koide1	home cage monitoring	(none)	number of beam breaks, light 12h period [n] LA_LIGHT 1801	wild-derived Mishima	11	f	8-13wks	N=10	2000

Koide1:2	Koide1	home cage monitoring	(none)	number of beam breaks, dark 12h period [n] LA_DARK 1802	wild-derived Mishima	11	f	8-13wks	N=10	2000

Koide1:3	Koide1	light-dark box	(none)	time in dark box [s] LD_DARK 1803	wild-derived Mishima	11	f	8-13wks	N=10	2000

Koide1:4	Koide1	light-dark box	(none)	number of transitions between light and dark compartments [n] LD_TRANS 1804	wild-derived Mishima	11	f	8-13wks	N=10	2000

Koide1:5	Koide1	avoidance test	(none)	passive avoidance test: latency to enter box before stimulus [s] PA_BEFORE 1805	wild-derived Mishima	11	f	8-13wks	N=10	2000

Koide1:6	Koide1	avoidance test	(none)	passive avoidance test: latency to enter box after stimulus [s] PA_AFTER 1806	wild-derived Mishima	11	f	8-13wks	N=10	2000

Koide1:7	Koide1	avoidance test	(none)	passive avoidance test: learned fear response, latency to enter box next day [s] PA_LEARNED 1807	wild-derived Mishima	11	f	8-13wks	N=10	2000

Koide1:8	Koide1	nociception assay	(none)	tail flick test: latency to respond [s] TF 1808	wild-derived Mishima	11	f	8-13wks	N=10	2000

Koide1:9	Koide1	nociception assay	(none)	hot plate test: latency to respond by licking [s] HP_LICK 1809	wild-derived Mishima	11	f	8-13wks	N=10	2000

Koide1:10	Koide1	nociception assay	(none)	hot plate test: latency to respond by jumping [s] HP_JUMP 1810	wild-derived Mishima	11	f	8-13wks	N=10	2000

Koide1:11	Koide1	avoidance test	(none)	active avoidance test: correct responses [%] AA 1811 day1 day2 day3 day4	wild-derived Mishima	10	f	8-13wks	N=10	2000

Koide2:2	Koide2	nociception assay	(none)	capsaicin solution consumption, percentage of baseline [%] capsaicin 35802 concentration (µM): 0.5 1 4 7 10 15	wild-derived Mishima	14	both	8-12wks	N=10	2003

Koide3:1	Koide3	open field test	(none)	number of transitions across dividing squares of 4X4 arena, 10 min test [n] transitions 35901	wild-derived Mishima	12	both	10wks	N=10	2006

Koide3:2	Koide3	open field test	(none)	ambulatory activity, horizontal, presence or absence of activity in 5s intervals over 10 min test [n] ambulation 35902	wild-derived Mishima	12	both	10wks	N=10	2006

Koide3:3	Koide3	open field test	(none)	rearing activity, presence or absence of activity in 5s intervals over 10 min test [n] rearing 35903	wild-derived Mishima	12	both	10wks	N=10	2006

Koide3:4	Koide3	open field test	(none)	leaning activity while rearing, presence or absence of activity in 5s intervals over 10 min test [n] leaning 35904	wild-derived Mishima	12	both	10wks	N=10	2006

Koide3:5	Koide3	open field test	(none)	jumping activity, presence or absence of activity in 5s intervals over 10 min test [n] jumping 35905	wild-derived Mishima	12	both	10wks	N=10	2006

Koide3:6	Koide3	open field test	(none)	inactivity for less than 3s, in 5s intervals over 10 min test [n] pausing 35906	wild-derived Mishima	12	both	10wks	N=10	2006

Koide3:7	Koide3	open field test	(none)	sniffing, presence or absence of activity in 5s intervals over 10 min test [n] sniffing 35907	wild-derived Mishima	12	both	10wks	N=10	2006

Koide3:8	Koide3	open field test	(none)	digging motion, presence or absence of activity in 5s intervals over 10 min test [n] digging 35908	wild-derived Mishima	12	both	10wks	N=10	2006

Koide3:9	Koide3	open field test	(none)	gnawing activity, presence or absence of activity in 5s intervals over 10 min test [n] gnawing 35909	wild-derived Mishima	12	both	10wks	N=10	2006

Koide3:10	Koide3	open field test	(none)	percentage of central ambulation (transitions in the central 4 squares of arena), 10 min test [%] pct_central_trans 35910	wild-derived Mishima	12	both	10wks	N=10	2006

Koide3:11	Koide3	open field test	(none)	stationary state lasting more than 3s, in 5s intervals over 10 min test [n] freezing 35911	wild-derived Mishima	12	both	10wks	N=10	2006

Koide3:12	Koide3	open field test	(none)	scrubbing face with forelimbs not followed by grooming, presence or absence of activity in 5s intervals over 10 min test [n] face_washing 35912	wild-derived Mishima	12	both	10wks	N=10	2006

Koide3:13	Koide3	open field test	(none)	licking or scratching body or tail, presence or absence of activity in 5s intervals over 10 min test [n] grooming 35913	wild-derived Mishima	12	both	10wks	N=10	2006

Koide3:14	Koide3	open field test	(none)	stretching body forward with stationery hindlimbs, presence or absence of activity in 5s intervals over 10 min test [n] stretch_attend 35914	wild-derived Mishima	12	both	10wks	N=10	2006

Koide3:15	Koide3	open field test	(none)	number of fecal boli, 10 min test [n] defecation 35915	wild-derived Mishima	12	both	10wks	N=10	2006

Koide3:16	Koide3	open field test	(none)	urine puddles (0=absence; 1=presence) 10 min test [score] urination 35916	wild-derived Mishima	12	both	10wks	N=10	2006

Koide1

home cage monitoring

(none)

number of beam breaks, light 12h period [n] LA_LIGHT 1801

wild-derived Mishima

11

f

8-13wks

N=10

2000

Koide1

home cage monitoring

(none)

number of beam breaks, dark 12h period [n] LA_DARK 1802

wild-derived Mishima

11

f

8-13wks

N=10

2000

Koide1

light-dark box

(none)

time in dark box [s] LD_DARK 1803

wild-derived Mishima

11

f

8-13wks

N=10

2000

Koide1

light-dark box

(none)

number of transitions between light and dark compartments [n] LD_TRANS 1804

wild-derived Mishima

11

f

8-13wks

N=10

2000

Koide1

avoidance test

(none)

passive avoidance test: latency to enter box before stimulus [s] PA_BEFORE 1805

wild-derived Mishima

11

f

8-13wks

N=10

2000

Koide1

avoidance test

(none)

passive avoidance test: latency to enter box after stimulus [s] PA_AFTER 1806

wild-derived Mishima

11

f

8-13wks

N=10

2000

Koide1

avoidance test

(none)

passive avoidance test: learned fear response, latency to enter box next day [s] PA_LEARNED 1807

wild-derived Mishima

11

f

8-13wks

N=10

2000

Koide1

nociception assay

(none)

tail flick test: latency to respond [s] TF 1808

wild-derived Mishima

11

f

8-13wks

N=10

2000

Koide1

nociception assay

(none)

hot plate test: latency to respond by licking [s] HP_LICK 1809

wild-derived Mishima

11

f

8-13wks

N=10

2000

Koide1

nociception assay

(none)

hot plate test: latency to respond by jumping [s] HP_JUMP 1810

wild-derived Mishima

11

f

8-13wks

N=10

2000

Koide1

avoidance test

(none)

active avoidance test: correct responses [%] AA 1811 day1 day2 day3 day4

wild-derived Mishima

10

f

8-13wks

N=10

2000

Koide2

nociception assay

(none)

capsaicin solution consumption, percentage of baseline [%] capsaicin 35802 concentration (µM): 0.5 1 4 7 10 15

wild-derived Mishima

14

both

8-12wks

N=10

2003

Koide3

open field test

(none)

number of transitions across dividing squares of 4X4 arena, 10 min test [n] transitions 35901

wild-derived Mishima

12

both

10wks

N=10

2006

Koide3

open field test

(none)

ambulatory activity, horizontal, presence or absence of activity in 5s intervals over 10 min test [n] ambulation 35902

wild-derived Mishima

12

both

10wks

N=10

2006

Koide3

open field test

(none)

rearing activity, presence or absence of activity in 5s intervals over 10 min test [n] rearing 35903

wild-derived Mishima

12

both

10wks

N=10

2006

Koide3

open field test

(none)

leaning activity while rearing, presence or absence of activity in 5s intervals over 10 min test [n] leaning 35904

wild-derived Mishima

12

both

10wks

N=10

2006

Koide3

open field test

(none)

jumping activity, presence or absence of activity in 5s intervals over 10 min test [n] jumping 35905

wild-derived Mishima

12

both

10wks

N=10

2006

Koide3

open field test

(none)

inactivity for less than 3s, in 5s intervals over 10 min test [n] pausing 35906

wild-derived Mishima

12

both

10wks

N=10

2006

Koide3

open field test

(none)

sniffing, presence or absence of activity in 5s intervals over 10 min test [n] sniffing 35907

wild-derived Mishima

12

both

10wks

N=10

2006

Koide3

open field test

(none)

digging motion, presence or absence of activity in 5s intervals over 10 min test [n] digging 35908

wild-derived Mishima

12

both

10wks

N=10

2006

Koide3

open field test

(none)

gnawing activity, presence or absence of activity in 5s intervals over 10 min test [n] gnawing 35909

wild-derived Mishima

12

both

10wks

N=10

2006

Koide3

open field test

(none)

percentage of central ambulation (transitions in the central 4 squares of arena), 10 min test [%] pct_central_trans 35910

wild-derived Mishima

12

both

10wks

N=10

2006

Koide3

open field test

(none)

stationary state lasting more than 3s, in 5s intervals over 10 min test [n] freezing 35911

wild-derived Mishima

12

both

10wks

N=10

2006

Koide3

open field test

(none)

scrubbing face with forelimbs not followed by grooming, presence or absence of activity in 5s intervals over 10 min test [n] face_washing 35912

wild-derived Mishima

12

both

10wks

N=10

2006

Koide3

open field test

(none)

licking or scratching body or tail, presence or absence of activity in 5s intervals over 10 min test [n] grooming 35913

wild-derived Mishima

12

both

10wks

N=10

2006

Koide3

open field test

(none)

stretching body forward with stationery hindlimbs, presence or absence of activity in 5s intervals over 10 min test [n] stretch_attend 35914

wild-derived Mishima

12

both

10wks

N=10

2006

Koide3

open field test

(none)

number of fecal boli, 10 min test [n] defecation 35915

wild-derived Mishima

12

both

10wks

N=10

2006

Koide3

open field test

(none)

urine puddles (0=absence; 1=presence) 10 min test [score] urination 35916

wild-derived Mishima

12

both

10wks

N=10

2006

Filter Table Results