Project measure / variable:   Koide3   gnawing

ID, description, units MPD:35909   gnawing   gnawing activity, presence or absence of activity in 5s intervals over 10 min test   [n]  
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Koide3 - gnawing activity, presence or absence of activity in 5s intervals over 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means3.11   n 2.76   n
Median of the strain means3.05   n 2.55   n
SD of the strain means± 2.23 ± 1.59
Coefficient of variation (CV)0.719 0.577
Min–max range of strain means0   –   7.10   n 0.100   –   5.40   n
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 7.35 7.35 0.7102 0.4003
strain 11 755.7333 68.703 6.6386 < 0.0001
sex:strain 11 72.45 6.5864 0.6364 0.7965
Residuals 216 2235.4 10.3491


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 3.9 3.78   10 1.2 0.97 0.35
BFM/2Ms m 4.8 3.12   10 0.987 0.65 1.28
BLG2/Ms f 7.1 7.29   10 2.31 1.03 1.79
BLG2/Ms m 5.4 3.98   10 1.26 0.737 1.0, 11.0 1.66
C57BL/6J f 0.2 0.632   10 0.2 3.16 -1.3
C57BL/6J m 1.3 0.949   10 0.3 0.73 -0.92
CAST/EiJ f 4.7 2.91   10 0.92 0.619 1.0, 11.0 0.71
CAST/EiJ m 4.3 2.75   10 0.87 0.64 1.0, 8.0 0.97
CHD/Ms f 2.4 4.48   10 1.42 1.87 -0.32
CHD/Ms m 2.5 2.8   10 0.885 1.12 -0.16
HMI/Ms f 1.2 1.4   10 0.442 1.17 -0.85
HMI/Ms m 1.1 0.994   10 0.314 0.904 -1.04
JF1/MsJ f 0.0 0.0   10 0.0 0.0 -1.39
JF1/MsJ m 0.1 0.316   10 0.1 3.16 -1.67
KJR/Ms f 3.7 4.42   10 1.4 1.2 0.26
KJR/Ms m 2.2 2.9   10 0.917 1.32 -0.35
MSM/MsJ f 1.8 1.75   10 0.554 0.973 -0.59
MSM/MsJ m 1.8 2.2   10 0.696 1.22 -0.6
NJL/Ms f 6.3 4.22   10 1.33 0.669 1.0, 14.0 1.43
NJL/Ms m 3.4 3.06   10 0.968 0.901 0.4
PGN2/Ms f 3.8 3.49   10 1.1 0.918 0.31
PGN2/Ms m 3.6 3.57   10 1.13 0.99 0.53
SWN/Ms f 2.2 1.32   10 0.416 0.598 -0.41
SWN/Ms m 2.6 4.17   10 1.32 1.6 -0.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 3.9 1.0173 5.9051 1.8949
BFM/2Ms m 4.8 1.0173 6.8051 2.7949
BLG2/Ms f 7.1 1.0173 9.1051 5.0949
BLG2/Ms m 5.4 1.0173 7.4051 3.3949
C57BL/6J f 0.2 1.0173 2.2051 -1.8051
C57BL/6J m 1.3 1.0173 3.3051 -0.7051
CAST/EiJ f 4.7 1.0173 6.7051 2.6949
CAST/EiJ m 4.3 1.0173 6.3051 2.2949
CHD/Ms f 2.4 1.0173 4.4051 0.3949
CHD/Ms m 2.5 1.0173 4.5051 0.4949
HMI/Ms f 1.2 1.0173 3.2051 -0.8051
HMI/Ms m 1.1 1.0173 3.1051 -0.9051
JF1/MsJ f 0.0 1.0173 2.0051 -2.0051
JF1/MsJ m 0.1 1.0173 2.1051 -1.9051
KJR/Ms f 3.7 1.0173 5.7051 1.6949
KJR/Ms m 2.2 1.0173 4.2051 0.1949
MSM/MsJ f 1.8 1.0173 3.8051 -0.2051
MSM/MsJ m 1.8 1.0173 3.8051 -0.2051
NJL/Ms f 6.3 1.0173 8.3051 4.2949
NJL/Ms m 3.4 1.0173 5.4051 1.3949
PGN2/Ms f 3.8 1.0173 5.8051 1.7949
PGN2/Ms m 3.6 1.0173 5.6051 1.5949
SWN/Ms f 2.2 1.0173 4.2051 0.1949
SWN/Ms m 2.6 1.0173 4.6051 0.5949


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 4.35 0.7193 5.7678 2.9322
BLG2/Ms both 6.25 0.7193 7.6678 4.8322
C57BL/6J both 0.75 0.7193 2.1678 -0.6678
CAST/EiJ both 4.5 0.7193 5.9178 3.0822
CHD/Ms both 2.45 0.7193 3.8678 1.0322
HMI/Ms both 1.15 0.7193 2.5678 -0.2678
JF1/MsJ both 0.05 0.7193 1.4678 -1.3678
KJR/Ms both 2.95 0.7193 4.3678 1.5322
MSM/MsJ both 1.8 0.7193 3.2178 0.3822
NJL/Ms both 4.85 0.7193 6.2678 3.4322
PGN2/Ms both 3.7 0.7193 5.1178 2.2822
SWN/Ms both 2.4 0.7193 3.8178 0.9822




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA