Project measure / variable:   Koide1   PA_AFTER

ID, description, units MPD:1806   PA_AFTER   passive avoidance test: latency to enter box after stimulus   [s]  
Data set, strains Koide1   wild-derived Mishima   11 strains     sex: f     age: 8-13wks
Procedure avoidance test
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  STRAIN COMPARISON PLOT
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Koide1 - passive avoidance test: latency to enter box after stimulus



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested11 strains
Mean of the strain means241   s
Median of the strain means247   s
SD of the strain means± 47.7
Coefficient of variation (CV)0.198
Min–max range of strain means159   –   291   s
Mean sample size per strain10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 227128.2545 22712.8255 3.6328 0.0004
Residuals 99 618966.8 6252.1899


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 288.0 38.9   10 12.3 0.135 177.0, 300.0 0.99
BLG2/Ms f 243.0 102.0   10 32.2 0.419 7.0, 300.0 0.05
C57BL/6J f 291.0 29.1   10 9.2 0.1 208.0, 300.0 1.06
CAST/EiJ f 159.0 82.4   10 26.1 0.518 15.0, 300.0 -1.71
DBA/1J f 195.0 75.5   10 23.9 0.387 111.0, 300.0 -0.96
HMI/Ms f 191.0 126.0   10 39.9 0.66 4.0, 300.0 -1.04
JF1/MsJ f 278.0 43.3   10 13.7 0.156 170.0, 300.0 0.78
KJR/Ms f 280.0 43.6   10 13.8 0.156 186.0, 300.0 0.82
MSM/MsJ f 247.0 89.4   10 28.3 0.362 61.0, 300.0 0.13
NJL/Ms f 194.0 111.0   10 35.0 0.571 8.0, 300.0 -0.98
SWN/Ms f 281.0 60.4   10 19.1 0.215 109.0, 300.0 0.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 287.7 25.0044 337.3141 238.0859
BLG2/Ms f 243.0 25.0044 292.6141 193.3859
C57BL/6J f 290.8 25.0044 340.4141 241.1859
CAST/EiJ f 159.0 25.0044 208.6141 109.3859
DBA/1J f 195.2 25.0044 244.8141 145.5859
HMI/Ms f 191.2 25.0044 240.8141 141.5859
JF1/MsJ f 278.3 25.0044 327.9141 228.6859
KJR/Ms f 279.5 25.0044 329.1141 229.8859
MSM/MsJ f 247.0 25.0044 296.6141 197.3859
NJL/Ms f 193.6 25.0044 243.2141 143.9859
SWN/Ms f 280.9 25.0044 330.5141 231.2859




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA