Phenotype measure:   Koide3   face_washing

ID, description, units MPD:35912   face_washing   scrubbing face with forelimbs not followed by grooming, presence or absence of activity in 5s intervals over 10 min test   [n]
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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Koide3 - scrubbing face with forelimbs not followed by grooming, presence or absence of activity in 5s intervals over 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means5.83   n 6.65   n
Median of the strain means5.25   n 5.20   n
SD of the strain means± 2.72 ± 3.29
Coefficient of variation (CV)0.466 0.495
Min–max range of strain means3.50   –   12.6   n 3.50   –   14.3   n
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 40.0167 40.0167 2.9579 0.0869
strain 11 1934.7833 175.8894 13.0012 < 0.0001
sex:strain 11 66.9833 6.0894 0.4501 0.9313
Residuals 216 2922.2 13.5287


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 7.3 5.01   10 1.58 0.687 0.54
BFM/2Ms m 8.9 3.7   10 1.17 0.415 4.0, 14.0 0.68
BLG2/Ms f 12.6 6.1   10 1.93 0.484 4.0, 26.0 2.49
BLG2/Ms m 14.3 6.34   10 2.01 0.444 6.0, 23.0 2.33
C57BL/6J f 5.5 3.84   10 1.21 0.698 2.0, 12.0 -0.12
C57BL/6J m 5.1 3.9   10 1.23 0.765 1.0, 12.0 -0.47
CAST/EiJ f 5.0 2.36   10 0.745 0.471 1.0, 9.0 -0.31
CAST/EiJ m 4.4 2.01   10 0.636 0.457 1.0, 7.0 -0.68
CHD/Ms f 3.6 3.47   10 1.1 0.964 -0.82
CHD/Ms m 5.3 3.95   10 1.25 0.744 -0.41
HMI/Ms f 9.1 3.75   10 1.19 0.413 1.0, 13.0 1.2
HMI/Ms m 10.0 3.43   10 1.09 0.343 5.0, 13.0 1.02
JF1/MsJ f 4.4 3.13   10 0.991 0.712 -0.53
JF1/MsJ m 4.1 2.23   10 0.706 0.545 1.0, 8.0 -0.78
KJR/Ms f 3.8 2.04   10 0.646 0.538 1.0, 7.0 -0.75
KJR/Ms m 3.5 3.21   10 1.01 0.916 -0.96
MSM/MsJ f 3.6 2.59   10 0.819 0.72 -0.82
MSM/MsJ m 3.7 2.0   10 0.633 0.541 -0.9
NJL/Ms f 3.5 2.64   10 0.833 0.753 1.0, 10.0 -0.86
NJL/Ms m 4.3 2.91   10 0.92 0.676 2.0, 11.0 -0.71
PGN2/Ms f 5.5 3.75   10 1.19 0.682 1.0, 12.0 -0.12
PGN2/Ms m 8.2 3.65   10 1.15 0.445 4.0, 14.0 0.47
SWN/Ms f 6.1 3.0   10 0.948 0.491 2.0, 11.0 0.1
SWN/Ms m 8.0 4.88   10 1.54 0.61 2.0, 17.0 0.41


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 7.3 1.1631 9.5925 5.0075
BFM/2Ms m 8.9 1.1631 11.1925 6.6075
BLG2/Ms f 12.6 1.1631 14.8925 10.3075
BLG2/Ms m 14.3 1.1631 16.5925 12.0075
C57BL/6J f 5.5 1.1631 7.7925 3.2075
C57BL/6J m 5.1 1.1631 7.3925 2.8075
CAST/EiJ f 5.0 1.1631 7.2925 2.7075
CAST/EiJ m 4.4 1.1631 6.6925 2.1075
CHD/Ms f 3.6 1.1631 5.8925 1.3075
CHD/Ms m 5.3 1.1631 7.5925 3.0075
HMI/Ms f 9.1 1.1631 11.3925 6.8075
HMI/Ms m 10.0 1.1631 12.2925 7.7075
JF1/MsJ f 4.4 1.1631 6.6925 2.1075
JF1/MsJ m 4.1 1.1631 6.3925 1.8075
KJR/Ms f 3.8 1.1631 6.0925 1.5075
KJR/Ms m 3.5 1.1631 5.7925 1.2075
MSM/MsJ f 3.6 1.1631 5.8925 1.3075
MSM/MsJ m 3.7 1.1631 5.9925 1.4075
NJL/Ms f 3.5 1.1631 5.7925 1.2075
NJL/Ms m 4.3 1.1631 6.5925 2.0075
PGN2/Ms f 5.5 1.1631 7.7925 3.2075
PGN2/Ms m 8.2 1.1631 10.4925 5.9075
SWN/Ms f 6.1 1.1631 8.3925 3.8075
SWN/Ms m 8.0 1.1631 10.2925 5.7075


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 8.1 0.8225 9.7211 6.4789
BLG2/Ms both 13.45 0.8225 15.0711 11.8289
C57BL/6J both 5.3 0.8225 6.9211 3.6789
CAST/EiJ both 4.7 0.8225 6.3211 3.0789
CHD/Ms both 4.45 0.8225 6.0711 2.8289
HMI/Ms both 9.55 0.8225 11.1711 7.9289
JF1/MsJ both 4.25 0.8225 5.8711 2.6289
KJR/Ms both 3.65 0.8225 5.2711 2.0289
MSM/MsJ both 3.65 0.8225 5.2711 2.0289
NJL/Ms both 3.9 0.8225 5.5211 2.2789
PGN2/Ms both 6.85 0.8225 8.4711 5.2289
SWN/Ms both 7.05 0.8225 8.6711 5.4289




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA