Project measure / variable:   Koide3   rearing

ID, description, units MPD:35903   rearing   rearing activity, presence or absence of activity in 5s intervals over 10 min test   [n]  
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Koide3 - rearing activity, presence or absence of activity in 5s intervals over 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means21.6   n 24.1   n
Median of the strain means21.7   n 21.9   n
SD of the strain means± 13.5 ± 14.4
Coefficient of variation (CV)0.624 0.597
Min–max range of strain means0.800   –   47.9   n 0.100   –   49.6   n
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 355.2667 355.2667 2.8677 0.0918
strain 11 39896.9333 3626.9939 29.2768 < 0.0001
sex:strain 11 2813.7333 255.7939 2.0648 0.0241
Residuals 216 26759.4 123.8861


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 28.5 9.87   10 3.12 0.346 15.0, 45.0 0.51
BFM/2Ms m 49.6 11.8   10 3.75 0.239 35.0, 72.0 1.78
BLG2/Ms f 35.3 14.3   10 4.53 0.406 11.0, 58.0 1.01
BLG2/Ms m 32.8 12.1   10 3.82 0.368 16.0, 56.0 0.61
C57BL/6J f 25.2 8.19   10 2.59 0.325 14.0, 42.0 0.27
C57BL/6J m 23.4 13.6   10 4.3 0.581 5.0, 43.0 -0.05
CAST/EiJ f 8.0 6.83   10 2.16 0.854 -1.01
CAST/EiJ m 20.4 18.4   10 5.82 0.902 2.0, 67.0 -0.25
CHD/Ms f 10.4 8.8   10 2.78 0.846 -0.83
CHD/Ms m 13.0 8.84   10 2.8 0.68 2.0, 33.0 -0.77
HMI/Ms f 11.3 5.54   10 1.75 0.49 3.0, 18.0 -0.76
HMI/Ms m 12.3 8.22   10 2.6 0.668 1.0, 26.0 -0.82
JF1/MsJ f 0.8 1.4   10 0.442 1.75 -1.54
JF1/MsJ m 0.1 0.316   10 0.1 3.16 -1.67
KJR/Ms f 21.2 12.5   10 3.96 0.59 4.0, 38.0 -0.03
KJR/Ms m 20.0 12.0   10 3.81 0.602 1.0, 47.0 -0.28
MSM/MsJ f 14.3 10.6   10 3.36 0.743 -0.54
MSM/MsJ m 13.9 10.3   10 3.26 0.743 3.0, 31.0 -0.71
NJL/Ms f 22.2 10.4   10 3.3 0.47 6.0, 40.0 0.04
NJL/Ms m 24.8 16.5   10 5.21 0.664 3.0, 61.0 0.05
PGN2/Ms f 47.9 11.0   10 3.48 0.23 33.0, 64.0 1.95
PGN2/Ms m 46.7 8.12   10 2.57 0.174 36.0, 58.0 1.58
SWN/Ms f 34.3 12.2   10 3.86 0.355 10.0, 51.0 0.94
SWN/Ms m 31.6 16.0   10 5.04 0.505 13.0, 55.0 0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 28.5 3.5197 35.4374 21.5626
BFM/2Ms m 49.6 3.5197 56.5374 42.6626
BLG2/Ms f 35.3 3.5197 42.2374 28.3626
BLG2/Ms m 32.8 3.5197 39.7374 25.8626
C57BL/6J f 25.2 3.5197 32.1374 18.2626
C57BL/6J m 23.4 3.5197 30.3374 16.4626
CAST/EiJ f 8.0 3.5197 14.9374 1.0626
CAST/EiJ m 20.4 3.5197 27.3374 13.4626
CHD/Ms f 10.4 3.5197 17.3374 3.4626
CHD/Ms m 13.0 3.5197 19.9374 6.0626
HMI/Ms f 11.3 3.5197 18.2374 4.3626
HMI/Ms m 12.3 3.5197 19.2374 5.3626
JF1/MsJ f 0.8 3.5197 7.7374 0.0
JF1/MsJ m 0.1 3.5197 7.0374 0.0
KJR/Ms f 21.2 3.5197 28.1374 14.2626
KJR/Ms m 20.0 3.5197 26.9374 13.0626
MSM/MsJ f 14.3 3.5197 21.2374 7.3626
MSM/MsJ m 13.9 3.5197 20.8374 6.9626
NJL/Ms f 22.2 3.5197 29.1374 15.2626
NJL/Ms m 24.8 3.5197 31.7374 17.8626
PGN2/Ms f 47.9 3.5197 54.8374 40.9626
PGN2/Ms m 46.7 3.5197 53.6374 39.7626
SWN/Ms f 34.3 3.5197 41.2374 27.3626
SWN/Ms m 31.6 3.5197 38.5374 24.6626


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 39.05 2.4888 43.9555 34.1445
BLG2/Ms both 34.05 2.4888 38.9555 29.1445
C57BL/6J both 24.3 2.4888 29.2055 19.3945
CAST/EiJ both 14.2 2.4888 19.1055 9.2945
CHD/Ms both 11.7 2.4888 16.6055 6.7945
HMI/Ms both 11.8 2.4888 16.7055 6.8945
JF1/MsJ both 0.45 2.4888 5.3555 0.0
KJR/Ms both 20.6 2.4888 25.5055 15.6945
MSM/MsJ both 14.1 2.4888 19.0055 9.1945
NJL/Ms both 23.5 2.4888 28.4055 18.5945
PGN2/Ms both 47.3 2.4888 52.2055 42.3945
SWN/Ms both 32.95 2.4888 37.8555 28.0445




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA