Project measure / variable:   Koide3   ambulation

ID, description, units MPD:35902   ambulation   ambulatory activity, horizontal, presence or absence of activity in 5s intervals over 10 min test   [n]  
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Koide3 - ambulatory activity, horizontal, presence or absence of activity in 5s intervals over 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means84.8   n 80.9   n
Median of the strain means88.8   n 85.6   n
SD of the strain means± 14.6 ± 21.0
Coefficient of variation (CV)0.172 0.259
Min–max range of strain means50.2   –   107   n 24.5   –   104   n
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 904.8167 904.8167 3.2593 0.0724
strain 11 67035.5333 6094.1394 21.9522 < 0.0001
sex:strain 11 4849.3833 440.853 1.588 0.1037
Residuals 216 59963.6 277.6093


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 90.9 15.1   10 4.78 0.166 55.0, 107.0 0.42
BFM/2Ms m 92.2 10.9   10 3.44 0.118 78.0, 114.0 0.54
BLG2/Ms f 93.7 10.9   10 3.46 0.117 78.0, 109.0 0.61
BLG2/Ms m 94.0 11.1   10 3.5 0.118 82.0, 111.0 0.63
C57BL/6J f 107.0 10.0   10 3.16 0.0938 81.0, 117.0 1.52
C57BL/6J m 104.0 6.91   10 2.19 0.0663 92.0, 114.0 1.1
CAST/EiJ f 90.4 24.8   10 7.83 0.274 32.0, 112.0 0.38
CAST/EiJ m 93.7 18.9   10 5.99 0.202 59.0, 116.0 0.61
CHD/Ms f 75.0 22.3   10 7.04 0.297 41.0, 103.0 -0.67
CHD/Ms m 74.0 25.5   10 8.08 0.345 37.0, 108.0 -0.33
HMI/Ms f 94.1 17.7   10 5.58 0.188 56.0, 114.0 0.64
HMI/Ms m 80.5 12.6   10 3.98 0.156 63.0, 105.0 -0.02
JF1/MsJ f 50.2 27.7   10 8.77 0.553 15.0, 114.0 -2.37
JF1/MsJ m 24.5 23.1   10 7.31 0.944 1.0, 65.0 -2.69
KJR/Ms f 87.2 9.26   10 2.93 0.106 72.0, 101.0 0.16
KJR/Ms m 97.6 8.22   10 2.6 0.0842 81.0, 109.0 0.8
MSM/MsJ f 70.3 18.1   10 5.71 0.257 40.0, 100.0 -0.99
MSM/MsJ m 70.0 12.6   10 3.99 0.18 48.0, 91.0 -0.52
NJL/Ms f 83.5 13.5   10 4.27 0.162 70.0, 114.0 -0.09
NJL/Ms m 82.2 21.8   10 6.88 0.265 40.0, 107.0 0.06
PGN2/Ms f 80.7 12.4   10 3.92 0.154 57.0, 102.0 -0.28
PGN2/Ms m 68.7 8.53   10 2.7 0.124 57.0, 86.0 -0.58
SWN/Ms f 94.7 13.4   10 4.23 0.141 73.0, 109.0 0.68
SWN/Ms m 89.0 18.2   10 5.75 0.204 55.0, 111.0 0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 90.9 5.2689 101.285 80.515
BFM/2Ms m 92.2 5.2689 102.585 81.815
BLG2/Ms f 93.7 5.2689 104.085 83.315
BLG2/Ms m 94.0 5.2689 104.385 83.615
C57BL/6J f 106.6 5.2689 116.985 96.215
C57BL/6J m 104.3 5.2689 114.685 93.915
CAST/EiJ f 90.4 5.2689 100.785 80.015
CAST/EiJ m 93.7 5.2689 104.085 83.315
CHD/Ms f 75.0 5.2689 85.385 64.615
CHD/Ms m 74.0 5.2689 84.385 63.615
HMI/Ms f 94.1 5.2689 104.485 83.715
HMI/Ms m 80.5 5.2689 90.885 70.115
JF1/MsJ f 50.2 5.2689 60.585 39.815
JF1/MsJ m 24.5 5.2689 34.885 14.115
KJR/Ms f 87.2 5.2689 97.585 76.815
KJR/Ms m 97.6 5.2689 107.985 87.215
MSM/MsJ f 70.3 5.2689 80.685 59.915
MSM/MsJ m 70.0 5.2689 80.385 59.615
NJL/Ms f 83.5 5.2689 93.885 73.115
NJL/Ms m 82.2 5.2689 92.585 71.815
PGN2/Ms f 80.7 5.2689 91.085 70.315
PGN2/Ms m 68.7 5.2689 79.085 58.315
SWN/Ms f 94.7 5.2689 105.085 84.315
SWN/Ms m 89.0 5.2689 99.385 78.615


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 91.55 3.7256 98.8933 84.2067
BLG2/Ms both 93.85 3.7256 101.1933 86.5067
C57BL/6J both 105.45 3.7256 112.7933 98.1067
CAST/EiJ both 92.05 3.7256 99.3933 84.7067
CHD/Ms both 74.5 3.7256 81.8433 67.1567
HMI/Ms both 87.3 3.7256 94.6433 79.9567
JF1/MsJ both 37.35 3.7256 44.6933 30.0067
KJR/Ms both 92.4 3.7256 99.7433 85.0567
MSM/MsJ both 70.15 3.7256 77.4933 62.8067
NJL/Ms both 82.85 3.7256 90.1933 75.5067
PGN2/Ms both 74.7 3.7256 82.0433 67.3567
SWN/Ms both 91.85 3.7256 99.1933 84.5067




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA