Project measure / variable:   Koide3   grooming

ID, description, units MPD:35913   grooming   licking or scratching body or tail, presence or absence of activity in 5s intervals over 10 min test   [n]  
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Koide3 - licking or scratching body or tail, presence or absence of activity in 5s intervals over 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means6.77   n 5.04   n
Median of the strain means2.90   n 2.40   n
SD of the strain means± 7.19 ± 5.44
Coefficient of variation (CV)1.06 1.08
Min–max range of strain means0   –   20.5   n 0.400   –   17.1   n
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 178.5375 178.5375 4.5759 0.0335
strain 11 8274.4458 752.2223 19.2793 < 0.0001
sex:strain 11 668.1125 60.7375 1.5567 0.1134
Residuals 216 8427.7 39.0171


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 2.3 4.11   10 1.3 1.79 -0.62
BFM/2Ms m 0.4 1.26   10 0.4 3.16 -0.85
BLG2/Ms f 2.7 3.68   10 1.16 1.36 -0.57
BLG2/Ms m 1.3 1.64   10 0.517 1.26 -0.69
C57BL/6J f 1.4 1.78   10 0.562 1.27 -0.75
C57BL/6J m 1.9 2.28   10 0.722 1.2 -0.58
CAST/EiJ f 1.4 2.07   10 0.653 1.48 -0.75
CAST/EiJ m 3.4 3.41   10 1.08 1.0 -0.3
CHD/Ms f 17.1 12.7   10 4.02 0.744 1.0, 40.0 1.44
CHD/Ms m 7.8 7.5   10 2.37 0.961 0.51
HMI/Ms f 0.0 0.0   10 0.0 0.0 -0.94
HMI/Ms m 0.4 0.699   10 0.221 1.75 -0.85
JF1/MsJ f 7.9 7.56   10 2.39 0.957 0.16
JF1/MsJ m 10.4 7.86   10 2.49 0.756 0.98
KJR/Ms f 7.7 3.62   10 1.15 0.47 3.0, 13.0 0.13
KJR/Ms m 1.6 2.55   10 0.806 1.59 -0.63
MSM/MsJ f 20.5 11.0   10 3.49 0.538 3.0, 36.0 1.91
MSM/MsJ m 17.1 8.63   10 2.73 0.505 5.0, 34.0 2.21
NJL/Ms f 16.0 11.6   10 3.68 0.726 1.28
NJL/Ms m 11.8 12.6   10 3.98 1.07 1.24
PGN2/Ms f 1.1 2.18   10 0.69 1.98 -0.79
PGN2/Ms m 1.5 1.18   10 0.373 0.786 -0.65
SWN/Ms f 3.1 3.57   10 1.13 1.15 -0.51
SWN/Ms m 2.9 3.41   10 1.08 1.18 -0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 2.3 1.9753 6.1933 -1.5933
BFM/2Ms m 0.4 1.9753 4.2933 -3.4933
BLG2/Ms f 2.7 1.9753 6.5933 -1.1933
BLG2/Ms m 1.3 1.9753 5.1933 -2.5933
C57BL/6J f 1.4 1.9753 5.2933 -2.4933
C57BL/6J m 1.9 1.9753 5.7933 -1.9933
CAST/EiJ f 1.4 1.9753 5.2933 -2.4933
CAST/EiJ m 3.4 1.9753 7.2933 -0.4933
CHD/Ms f 17.1 1.9753 20.9933 13.2067
CHD/Ms m 7.8 1.9753 11.6933 3.9067
HMI/Ms f 0.0 1.9753 3.8933 -3.8933
HMI/Ms m 0.4 1.9753 4.2933 -3.4933
JF1/MsJ f 7.9 1.9753 11.7933 4.0067
JF1/MsJ m 10.4 1.9753 14.2933 6.5067
KJR/Ms f 7.7 1.9753 11.5933 3.8067
KJR/Ms m 1.6 1.9753 5.4933 -2.2933
MSM/MsJ f 20.5 1.9753 24.3933 16.6067
MSM/MsJ m 17.1 1.9753 20.9933 13.2067
NJL/Ms f 16.0 1.9753 19.8933 12.1067
NJL/Ms m 11.8 1.9753 15.6933 7.9067
PGN2/Ms f 1.1 1.9753 4.9933 -2.7933
PGN2/Ms m 1.5 1.9753 5.3933 -2.3933
SWN/Ms f 3.1 1.9753 6.9933 -0.7933
SWN/Ms m 2.9 1.9753 6.7933 -0.9933


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 1.35 1.3967 4.103 -1.403
BLG2/Ms both 2.0 1.3967 4.753 -0.753
C57BL/6J both 1.65 1.3967 4.403 -1.103
CAST/EiJ both 2.4 1.3967 5.153 -0.353
CHD/Ms both 12.45 1.3967 15.203 9.697
HMI/Ms both 0.2 1.3967 2.953 -2.553
JF1/MsJ both 9.15 1.3967 11.903 6.397
KJR/Ms both 4.65 1.3967 7.403 1.897
MSM/MsJ both 18.8 1.3967 21.553 16.047
NJL/Ms both 13.9 1.3967 16.653 11.147
PGN2/Ms both 1.3 1.3967 4.053 -1.453
SWN/Ms both 3.0 1.3967 5.753 0.247




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA