Project measure / variable:   Koide3   transitions

ID, description, units MPD:35901   transitions   number of transitions across dividing squares of 4X4 arena, 10 min test   [n]  
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Koide3 - number of transitions across dividing squares of 4X4 arena, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means301   n 281   n
Median of the strain means326   n 320   n
SD of the strain means± 78.6 ± 97.9
Coefficient of variation (CV)0.261 0.348
Min–max range of strain means137   –   401   n 49.8   –   430   n
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 23820.3375 23820.3375 2.4584 0.1184
strain 11 1565903.4458 142354.8587 14.6918 < 0.0001
sex:strain 11 170046.9125 15458.8102 1.5954 0.1015
Residuals 216 2092915.1 9689.4218


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 324.0 120.0   10 37.9 0.37 160.0, 589.0 0.29
BFM/2Ms m 325.0 72.1   10 22.8 0.222 267.0, 522.0 0.45
BLG2/Ms f 305.0 51.8   10 16.4 0.17 233.0, 398.0 0.05
BLG2/Ms m 325.0 64.5   10 20.4 0.199 256.0, 422.0 0.45
C57BL/6J f 401.0 99.0   10 31.3 0.247 216.0, 580.0 1.27
C57BL/6J m 356.0 81.9   10 25.9 0.23 253.0, 497.0 0.76
CAST/EiJ f 329.0 149.0   10 47.2 0.453 68.0, 545.0 0.35
CAST/EiJ m 328.0 109.0   10 34.4 0.332 148.0, 444.0 0.48
CHD/Ms f 241.0 93.7   10 29.6 0.389 103.0, 375.0 -0.77
CHD/Ms m 254.0 110.0   10 34.7 0.431 116.0, 463.0 -0.28
HMI/Ms f 368.0 119.0   10 37.6 0.323 170.0, 524.0 0.85
HMI/Ms m 253.0 59.9   10 18.9 0.237 164.0, 367.0 -0.29
JF1/MsJ f 137.0 140.0   10 44.2 1.02 25.0, 519.0 -2.09
JF1/MsJ m 49.8 55.6   10 17.6 1.12 3.0, 151.0 -2.36
KJR/Ms f 328.0 74.2   10 23.5 0.226 227.0, 475.0 0.34
KJR/Ms m 430.0 98.5   10 31.1 0.229 287.0, 606.0 1.52
MSM/MsJ f 206.0 65.0   10 20.6 0.316 108.0, 302.0 -1.21
MSM/MsJ m 195.0 48.6   10 15.4 0.25 121.0, 296.0 -0.88
NJL/Ms f 343.0 145.0   10 45.9 0.423 225.0, 723.0 0.53
NJL/Ms m 314.0 112.0   10 35.4 0.357 129.0, 443.0 0.33
PGN2/Ms f 247.0 39.9   10 12.6 0.162 171.0, 311.0 -0.69
PGN2/Ms m 210.0 46.2   10 14.6 0.22 150.0, 294.0 -0.73
SWN/Ms f 386.0 129.0   10 40.9 0.335 206.0, 707.0 1.08
SWN/Ms m 336.0 136.0   10 43.0 0.405 189.0, 601.0 0.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 324.2 31.1278 385.5532 262.8468
BFM/2Ms m 324.8 31.1278 386.1532 263.4468
BLG2/Ms f 304.9 31.1278 366.2532 243.5468
BLG2/Ms m 324.7 31.1278 386.0532 263.3468
C57BL/6J f 400.9 31.1278 462.2532 339.5468
C57BL/6J m 355.6 31.1278 416.9532 294.2468
CAST/EiJ f 329.0 31.1278 390.3532 267.6468
CAST/EiJ m 328.2 31.1278 389.5532 266.8468
CHD/Ms f 240.6 31.1278 301.9532 179.2468
CHD/Ms m 254.2 31.1278 315.5532 192.8468
HMI/Ms f 368.3 31.1278 429.6532 306.9468
HMI/Ms m 252.8 31.1278 314.1532 191.4468
JF1/MsJ f 136.7 31.1278 198.0532 75.3468
JF1/MsJ m 49.8 31.1278 111.1532 0.0
KJR/Ms f 327.7 31.1278 389.0532 266.3468
KJR/Ms m 429.9 31.1278 491.2532 368.5468
MSM/MsJ f 205.7 31.1278 267.0532 144.3468
MSM/MsJ m 194.6 31.1278 255.9532 133.2468
NJL/Ms f 343.4 31.1278 404.7532 282.0468
NJL/Ms m 314.1 31.1278 375.4532 252.7468
PGN2/Ms f 246.6 31.1278 307.9532 185.2468
PGN2/Ms m 210.2 31.1278 271.5532 148.8468
SWN/Ms f 385.9 31.1278 447.2532 324.5468
SWN/Ms m 335.9 31.1278 397.2532 274.5468


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 324.5 22.0107 367.8833 281.1167
BLG2/Ms both 314.8 22.0107 358.1833 271.4167
C57BL/6J both 378.25 22.0107 421.6333 334.8667
CAST/EiJ both 328.6 22.0107 371.9833 285.2167
CHD/Ms both 247.4 22.0107 290.7833 204.0167
HMI/Ms both 310.55 22.0107 353.9333 267.1667
JF1/MsJ both 93.25 22.0107 136.6333 49.8667
KJR/Ms both 378.8 22.0107 422.1833 335.4167
MSM/MsJ both 200.15 22.0107 243.5333 156.7667
NJL/Ms both 328.75 22.0107 372.1333 285.3667
PGN2/Ms both 228.4 22.0107 271.7833 185.0167
SWN/Ms both 360.9 22.0107 404.2833 317.5167




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA