Project measure / variable:   Koide3   jumping

ID, description, units MPD:35905   jumping   jumping activity, presence or absence of activity in 5s intervals over 10 min test   [n]  
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Koide3 - jumping activity, presence or absence of activity in 5s intervals over 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means10.1   n 9.22   n
Median of the strain means3.50   n 3.20   n
SD of the strain means± 13.8 ± 13.5
Coefficient of variation (CV)1.37 1.47
Min–max range of strain means0   –   45.5   n 0   –   47.1   n
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 43.35 43.35 0.6572 0.4185
strain 11 40619.0 3692.6364 55.9797 < 0.0001
sex:strain 11 672.05 61.0955 0.9262 0.516
Residuals 216 14248.2 65.9639


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 4.3 4.52   10 1.43 1.05 -0.42
BFM/2Ms m 3.1 4.15   10 1.31 1.34 -0.45
BLG2/Ms f 2.7 3.62   10 1.15 1.34 -0.53
BLG2/Ms m 3.3 3.59   10 1.14 1.09 -0.44
C57BL/6J f 0.1 0.316   10 0.1 3.16 -0.72
C57BL/6J m 0.1 0.316   10 0.1 3.16 -0.67
CAST/EiJ f 2.4 3.06   10 0.968 1.28 -0.55
CAST/EiJ m 1.8 3.55   10 1.12 1.97 -0.55
CHD/Ms f 1.0 1.33   10 0.422 1.33 -0.66
CHD/Ms m 1.0 2.83   10 0.894 2.83 -0.61
HMI/Ms f 25.2 17.7   10 5.61 0.703 1.09
HMI/Ms m 13.6 12.7   10 4.03 0.936 0.32
JF1/MsJ f 0.0 0.0   10 0.0 0.0 -0.73
JF1/MsJ m 0.0 0.0   10 0.0 0.0 -0.68
KJR/Ms f 19.6 13.1   10 4.13 0.666 4.0, 47.0 0.69
KJR/Ms m 20.2 13.2   10 4.17 0.653 3.0, 42.0 0.81
MSM/MsJ f 0.1 0.316   10 0.1 3.16 -0.72
MSM/MsJ m 0.3 0.483   10 0.153 1.61 -0.66
NJL/Ms f 11.7 10.8   10 3.4 0.92 0.12
NJL/Ms m 10.5 10.9   10 3.45 1.04 0.09
PGN2/Ms f 45.5 9.78   10 3.09 0.215 27.0, 56.0 2.56
PGN2/Ms m 47.1 15.7   10 4.95 0.333 15.0, 68.0 2.8
SWN/Ms f 8.3 7.29   10 2.3 0.878 -0.13
SWN/Ms m 9.7 6.15   10 1.94 0.634 0.04


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 4.3 2.5683 9.3622 -0.7622
BFM/2Ms m 3.1 2.5683 8.1622 -1.9622
BLG2/Ms f 2.7 2.5683 7.7622 -2.3622
BLG2/Ms m 3.3 2.5683 8.3622 -1.7622
C57BL/6J f 0.1 2.5683 5.1622 -4.9622
C57BL/6J m 0.1 2.5683 5.1622 -4.9622
CAST/EiJ f 2.4 2.5683 7.4622 -2.6622
CAST/EiJ m 1.8 2.5683 6.8622 -3.2622
CHD/Ms f 1.0 2.5683 6.0622 -4.0622
CHD/Ms m 1.0 2.5683 6.0622 -4.0622
HMI/Ms f 25.2 2.5683 30.2622 20.1378
HMI/Ms m 13.6 2.5683 18.6622 8.5378
JF1/MsJ f 0.0 2.5683 5.0622 -5.0622
JF1/MsJ m 0.0 2.5683 5.0622 -5.0622
KJR/Ms f 19.6 2.5683 24.6622 14.5378
KJR/Ms m 20.2 2.5683 25.2622 15.1378
MSM/MsJ f 0.1 2.5683 5.1622 -4.9622
MSM/MsJ m 0.3 2.5683 5.3622 -4.7622
NJL/Ms f 11.7 2.5683 16.7622 6.6378
NJL/Ms m 10.5 2.5683 15.5622 5.4378
PGN2/Ms f 45.5 2.5683 50.5622 40.4378
PGN2/Ms m 47.1 2.5683 52.1622 42.0378
SWN/Ms f 8.3 2.5683 13.3622 3.2378
SWN/Ms m 9.7 2.5683 14.7622 4.6378


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 3.7 1.8161 7.2795 0.1205
BLG2/Ms both 3.0 1.8161 6.5795 -0.5795
C57BL/6J both 0.1 1.8161 3.6795 -3.4795
CAST/EiJ both 2.1 1.8161 5.6795 -1.4795
CHD/Ms both 1.0 1.8161 4.5795 -2.5795
HMI/Ms both 19.4 1.8161 22.9795 15.8205
JF1/MsJ both 0.0 1.8161 3.5795 -3.5795
KJR/Ms both 19.9 1.8161 23.4795 16.3205
MSM/MsJ both 0.2 1.8161 3.7795 -3.3795
NJL/Ms both 11.1 1.8161 14.6795 7.5205
PGN2/Ms both 46.3 1.8161 49.8795 42.7205
SWN/Ms both 9.0 1.8161 12.5795 5.4205




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA