Project measure / variable:   Koide3   digging

ID, description, units MPD:35908   digging   digging motion, presence or absence of activity in 5s intervals over 10 min test   [n]  
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Koide3 - digging motion, presence or absence of activity in 5s intervals over 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means2.31   n 2.18   n
Median of the strain means1.40   n 1.85   n
SD of the strain means± 2.65 ± 2.16
Coefficient of variation (CV)1.15 0.992
Min–max range of strain means0   –   8.70   n 0   –   6.30   n
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.0667 1.0667 0.0852 0.7706
strain 11 1084.4833 98.5894 7.8755 < 0.0001
sex:strain 11 200.4333 18.2212 1.4555 0.1501
Residuals 216 2704.0 12.5185


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 8.7 8.03   10 2.54 0.923 1.0, 25.0 2.41
BFM/2Ms m 5.7 6.78   10 2.15 1.19 1.63
BLG2/Ms f 2.0 1.7   10 0.537 0.85 -0.12
BLG2/Ms m 3.3 4.42   10 1.4 1.34 0.52
C57BL/6J f 0.0 0.0   10 0.0 0.0 -0.87
C57BL/6J m 0.3 0.675   10 0.213 2.25 -0.87
CAST/EiJ f 1.3 1.64   10 0.517 1.26 -0.38
CAST/EiJ m 2.0 4.08   10 1.29 2.04 -0.08
CHD/Ms f 0.0 0.0   10 0.0 0.0 -0.87
CHD/Ms m 0.6 1.07   10 0.34 1.79 -0.73
HMI/Ms f 0.2 0.422   10 0.133 2.11 -0.8
HMI/Ms m 0.0 0.0   10 0.0 0.0 -1.01
JF1/MsJ f 0.0 0.0   10 0.0 0.0 -0.87
JF1/MsJ m 0.1 0.316   10 0.1 3.16 -0.96
KJR/Ms f 5.0 4.16   10 1.32 0.833 1.02
KJR/Ms m 3.6 3.92   10 1.24 1.09 0.66
MSM/MsJ f 1.5 2.01   10 0.637 1.34 -0.3
MSM/MsJ m 1.7 2.95   10 0.932 1.73 -0.22
NJL/Ms f 4.5 4.28   10 1.35 0.95 0.83
NJL/Ms m 0.4 0.516   10 0.163 1.29 -0.82
PGN2/Ms f 1.2 1.69   10 0.533 1.41 -0.42
PGN2/Ms m 2.1 2.13   10 0.674 1.02 -0.03
SWN/Ms f 3.3 2.63   10 0.831 0.796 1.0, 8.0 0.37
SWN/Ms m 6.3 8.25   10 2.61 1.31 1.91


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 8.7 1.1189 10.9053 6.4947
BFM/2Ms m 5.7 1.1189 7.9053 3.4947
BLG2/Ms f 2.0 1.1189 4.2053 -0.2053
BLG2/Ms m 3.3 1.1189 5.5053 1.0947
C57BL/6J f 0.0 1.1189 2.2053 -2.2053
C57BL/6J m 0.3 1.1189 2.5053 -1.9053
CAST/EiJ f 1.3 1.1189 3.5053 -0.9053
CAST/EiJ m 2.0 1.1189 4.2053 -0.2053
CHD/Ms f 0.0 1.1189 2.2053 -2.2053
CHD/Ms m 0.6 1.1189 2.8053 -1.6053
HMI/Ms f 0.2 1.1189 2.4053 -2.0053
HMI/Ms m 0.0 1.1189 2.2053 -2.2053
JF1/MsJ f 0.0 1.1189 2.2053 -2.2053
JF1/MsJ m 0.1 1.1189 2.3053 -2.1053
KJR/Ms f 5.0 1.1189 7.2053 2.7947
KJR/Ms m 3.6 1.1189 5.8053 1.3947
MSM/MsJ f 1.5 1.1189 3.7053 -0.7053
MSM/MsJ m 1.7 1.1189 3.9053 -0.5053
NJL/Ms f 4.5 1.1189 6.7053 2.2947
NJL/Ms m 0.4 1.1189 2.6053 -1.8053
PGN2/Ms f 1.2 1.1189 3.4053 -1.0053
PGN2/Ms m 2.1 1.1189 4.3053 -0.1053
SWN/Ms f 3.3 1.1189 5.5053 1.0947
SWN/Ms m 6.3 1.1189 8.5053 4.0947


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 7.2 0.7912 8.7594 5.6406
BLG2/Ms both 2.65 0.7912 4.2094 1.0906
C57BL/6J both 0.15 0.7912 1.7094 -1.4094
CAST/EiJ both 1.65 0.7912 3.2094 0.0906
CHD/Ms both 0.3 0.7912 1.8594 -1.2594
HMI/Ms both 0.1 0.7912 1.6594 -1.4594
JF1/MsJ both 0.05 0.7912 1.6094 -1.5094
KJR/Ms both 4.3 0.7912 5.8594 2.7406
MSM/MsJ both 1.6 0.7912 3.1594 0.0406
NJL/Ms both 2.45 0.7912 4.0094 0.8906
PGN2/Ms both 1.65 0.7912 3.2094 0.0906
SWN/Ms both 4.8 0.7912 6.3594 3.2406




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA