Phenotype measure:   Koide3   stretch_attend

ID, description, units MPD:35914   stretch_attend   stretching body forward with stationery hindlimbs, presence or absence of activity in 5s intervals over 10 min test   [n]
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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Koide3 - stretching body forward with stationery hindlimbs, presence or absence of activity in 5s intervals over 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means3.59   n 4.28   n
Median of the strain means3.10   n 4.40   n
SD of the strain means± 2.85 ± 3.27
Coefficient of variation (CV)0.793 0.763
Min–max range of strain means0.400   –   8.10   n 0.500   –   10.3   n
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 28.7042 28.7042 1.509 0.2206
strain 11 1894.4125 172.2193 9.0538 < 0.0001
sex:strain 11 174.2458 15.8405 0.8328 0.6074
Residuals 216 4108.7 19.0218


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 0.9 1.85   10 0.586 2.06 -0.94
BFM/2Ms m 2.5 2.17   10 0.687 0.869 -0.55
BLG2/Ms f 1.1 1.45   10 0.458 1.32 -0.87
BLG2/Ms m 0.5 0.85   10 0.269 1.7 -1.16
C57BL/6J f 5.2 2.39   10 0.757 0.46 1.0, 8.0 0.56
C57BL/6J m 4.7 3.02   10 0.955 0.643 2.0, 10.0 0.13
CAST/EiJ f 7.4 11.1   10 3.5 1.5 1.34
CAST/EiJ m 8.2 10.8   10 3.42 1.32 1.2
CHD/Ms f 6.4 6.59   10 2.08 1.03 1.0, 23.0 0.99
CHD/Ms m 5.4 3.2   10 1.01 0.593 1.0, 12.0 0.34
HMI/Ms f 1.3 1.25   10 0.396 0.963 -0.8
HMI/Ms m 4.1 3.03   10 0.96 0.74 -0.06
JF1/MsJ f 5.3 5.03   10 1.59 0.95 0.6
JF1/MsJ m 10.3 4.69   10 1.48 0.455 4.0, 17.0 1.84
KJR/Ms f 0.4 0.699   10 0.221 1.75 -1.12
KJR/Ms m 0.6 0.843   10 0.267 1.41 -1.13
MSM/MsJ f 4.5 2.88   10 0.91 0.639 0.32
MSM/MsJ m 5.2 3.82   10 1.21 0.735 0.28
NJL/Ms f 8.1 5.28   10 1.67 0.652 1.0, 20.0 1.58
NJL/Ms m 7.7 4.42   10 1.4 0.574 1.0, 14.0 1.05
PGN2/Ms f 1.7 1.57   10 0.496 0.922 -0.66
PGN2/Ms m 0.5 0.85   10 0.269 1.7 -1.16
SWN/Ms f 0.8 1.03   10 0.327 1.29 -0.98
SWN/Ms m 1.7 1.83   10 0.578 1.08 -0.79


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 0.9 1.3792 3.6184 0.0
BFM/2Ms m 2.5 1.3792 5.2184 0.0
BLG2/Ms f 1.1 1.3792 3.8184 0.0
BLG2/Ms m 0.5 1.3792 3.2184 0.0
C57BL/6J f 5.2 1.3792 7.9184 2.4816
C57BL/6J m 4.7 1.3792 7.4184 1.9816
CAST/EiJ f 7.4 1.3792 10.1184 4.6816
CAST/EiJ m 8.2 1.3792 10.9184 5.4816
CHD/Ms f 6.4 1.3792 9.1184 3.6816
CHD/Ms m 5.4 1.3792 8.1184 2.6816
HMI/Ms f 1.3 1.3792 4.0184 0.0
HMI/Ms m 4.1 1.3792 6.8184 1.3816
JF1/MsJ f 5.3 1.3792 8.0184 2.5816
JF1/MsJ m 10.3 1.3792 13.0184 7.5816
KJR/Ms f 0.4 1.3792 3.1184 0.0
KJR/Ms m 0.6 1.3792 3.3184 0.0
MSM/MsJ f 4.5 1.3792 7.2184 1.7816
MSM/MsJ m 5.2 1.3792 7.9184 2.4816
NJL/Ms f 8.1 1.3792 10.8184 5.3816
NJL/Ms m 7.7 1.3792 10.4184 4.9816
PGN2/Ms f 1.7 1.3792 4.4184 0.0
PGN2/Ms m 0.5 1.3792 3.2184 0.0
SWN/Ms f 0.8 1.3792 3.5184 0.0
SWN/Ms m 1.7 1.3792 4.4184 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 1.7 0.9752 3.6222 0.0
BLG2/Ms both 0.8 0.9752 2.7222 0.0
C57BL/6J both 4.95 0.9752 6.8722 3.0278
CAST/EiJ both 7.8 0.9752 9.7222 5.8778
CHD/Ms both 5.9 0.9752 7.8222 3.9778
HMI/Ms both 2.7 0.9752 4.6222 0.7778
JF1/MsJ both 7.8 0.9752 9.7222 5.8778
KJR/Ms both 0.5 0.9752 2.4222 0.0
MSM/MsJ both 4.85 0.9752 6.7722 2.9278
NJL/Ms both 7.9 0.9752 9.8222 5.9778
PGN2/Ms both 1.1 0.9752 3.0222 0.0
SWN/Ms both 1.25 0.9752 3.1722 0.0




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA