Project measure / variable:   Koide1   PA_BEFORE

ID, description, units MPD:1805   PA_BEFORE   passive avoidance test: latency to enter box before stimulus   [s]  
Data set, strains Koide1   wild-derived Mishima   11 strains     sex: f     age: 8-13wks
Procedure avoidance test
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  STRAIN COMPARISON PLOT
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Koide1 - passive avoidance test: latency to enter box before stimulus



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested11 strains
Mean of the strain means24.1   s
Median of the strain means13.4   s
SD of the strain means± 20.4
Coefficient of variation (CV)0.848
Min–max range of strain means7.50   –   74.1   s
Mean sample size per strain10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 41642.4545 4164.2455 5.7916 < 0.0001
Residuals 99 71182.1 719.0111


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 18.8 16.0   10 5.06 0.851 1.0, 47.0 -0.26
BLG2/Ms f 7.5 6.04   10 1.91 0.806 1.0, 20.0 -0.81
C57BL/6J f 8.6 5.66   10 1.79 0.658 2.0, 17.0 -0.76
CAST/EiJ f 9.8 10.3   10 3.24 1.05 1.0, 28.0 -0.7
DBA/1J f 13.4 9.17   10 2.9 0.684 2.0, 33.0 -0.52
HMI/Ms f 34.5 58.1   10 18.4 1.68 1.0, 180.0 0.51
JF1/MsJ f 43.6 25.3   10 7.99 0.58 25.0, 103.0 0.96
KJR/Ms f 74.1 43.8   10 13.9 0.592 13.0, 149.0 2.45
MSM/MsJ f 29.8 31.9   10 10.1 1.07 7.0, 115.0 0.28
NJL/Ms f 11.3 15.3   10 4.84 1.36 1.0, 50.0 -0.63
SWN/Ms f 13.3 14.4   10 4.55 1.08 1.0, 43.0 -0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 18.8 8.4795 35.6251 1.9749
BLG2/Ms f 7.5 8.4795 24.3251 0.0
C57BL/6J f 8.6 8.4795 25.4251 0.0
CAST/EiJ f 9.8 8.4795 26.6251 0.0
DBA/1J f 13.4 8.4795 30.2251 0.0
HMI/Ms f 34.5 8.4795 51.3251 17.6749
JF1/MsJ f 43.6 8.4795 60.4251 26.7749
KJR/Ms f 74.1 8.4795 90.9251 57.2749
MSM/MsJ f 29.8 8.4795 46.6251 12.9749
NJL/Ms f 11.3 8.4795 28.1251 0.0
SWN/Ms f 13.3 8.4795 30.1251 0.0




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA