Project measure / variable:   Koide3   pct_central_trans

ID, description, units MPD:35910   pct_central_trans   percentage of central ambulation (transitions in the central 4 squares of arena), 10 min test   [%]  
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Koide3 - percentage of central ambulation (transitions in the central 4 squares of arena), 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means13.1   % 13.3   %
Median of the strain means13.7   % 13.6   %
SD of the strain means± 4.39 ± 5.61
Coefficient of variation (CV)0.335 0.421
Min–max range of strain means3.14   –   19.2   % 0.988   –   22.4   %
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.1556 3.1556 0.0912 0.763
strain 11 5027.7445 457.0677 13.2036 < 0.0001
sex:strain 11 544.6465 49.5133 1.4303 0.1607
Residuals 216 7477.2556 34.6169


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 15.9 5.58   10 1.76 0.352 6.88, 20.6 0.64
BFM/2Ms m 22.4 5.25   10 1.66 0.234 16.5, 30.4 1.62
BLG2/Ms f 19.2 3.56   10 1.13 0.186 14.0, 24.2 1.39
BLG2/Ms m 20.5 4.44   10 1.4 0.217 14.4, 26.3 1.28
C57BL/6J f 16.9 2.93   10 0.927 0.174 11.6, 21.8 0.87
C57BL/6J m 16.4 3.74   10 1.18 0.228 9.54, 22.1 0.55
CAST/EiJ f 9.68 5.72   10 1.81 0.591 -0.78
CAST/EiJ m 14.6 7.48   10 2.36 0.512 5.41, 25.9 0.23
CHD/Ms f 17.6 9.39   10 2.97 0.533 1.94, 29.1 1.02
CHD/Ms m 14.4 9.49   10 3.0 0.659 3.45, 28.7 0.19
HMI/Ms f 12.2 3.65   10 1.15 0.299 7.06, 19.5 -0.21
HMI/Ms m 11.8 5.46   10 1.73 0.463 3.05, 17.4 -0.27
JF1/MsJ f 3.14 5.66   10 1.79 1.8 -2.27
JF1/MsJ m 0.988 1.56   10 0.492 1.57 -2.2
KJR/Ms f 10.9 9.92   10 3.14 0.907 0.44, 24.9 -0.5
KJR/Ms m 7.81 4.1   10 1.3 0.525 2.43, 13.5 -0.98
MSM/MsJ f 9.64 4.19   10 1.32 0.434 2.34, 14.6 -0.79
MSM/MsJ m 11.4 4.94   10 1.56 0.433 6.61, 21.7 -0.34
NJL/Ms f 13.4 5.04   10 1.59 0.377 5.53, 22.4 0.07
NJL/Ms m 11.1 6.52   10 2.06 0.59 2.19, 23.6 -0.4
PGN2/Ms f 14.7 2.69   10 0.85 0.183 10.5, 19.2 0.36
PGN2/Ms m 12.7 5.47   10 1.73 0.431 4.81, 20.1 -0.11
SWN/Ms f 14.0 5.47   10 1.73 0.392 3.54, 24.7 0.2
SWN/Ms m 15.8 8.98   10 2.84 0.569 6.22, 31.9 0.44


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 15.854 1.8606 19.5212 12.1868
BFM/2Ms m 22.42 1.8606 26.0872 18.7528
BLG2/Ms f 19.19 1.8606 22.8572 15.5228
BLG2/Ms m 20.49 1.8606 24.1572 16.8228
C57BL/6J f 16.87 1.8606 20.5372 13.2028
C57BL/6J m 16.404 1.8606 20.0712 12.7368
CAST/EiJ f 9.679 1.8606 13.3462 6.0118
CAST/EiJ m 14.591 1.8606 18.2582 10.9238
CHD/Ms f 17.602 1.8606 21.2692 13.9348
CHD/Ms m 14.409 1.8606 18.0762 10.7418
HMI/Ms f 12.2 1.8606 15.8672 8.5328
HMI/Ms m 11.789 1.8606 15.4562 8.1218
JF1/MsJ f 3.143 1.8606 6.8102 0.0
JF1/MsJ m 0.988 1.8606 4.6552 0.0
KJR/Ms f 10.936 1.8606 14.6032 7.2688
KJR/Ms m 7.809 1.8606 11.4762 4.1418
MSM/MsJ f 9.64 1.8606 13.3072 5.9728
MSM/MsJ m 11.411 1.8606 15.0782 7.7438
NJL/Ms f 13.36 1.8606 17.0272 9.6928
NJL/Ms m 11.054 1.8606 14.7212 7.3868
PGN2/Ms f 14.67 1.8606 18.3372 11.0028
PGN2/Ms m 12.708 1.8606 16.3752 9.0408
SWN/Ms f 13.954 1.8606 17.6212 10.2868
SWN/Ms m 15.777 1.8606 19.4442 12.1098


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 19.137 1.3156 21.7301 16.5439
BLG2/Ms both 19.84 1.3156 22.4331 17.2469
C57BL/6J both 16.637 1.3156 19.2301 14.0439
CAST/EiJ both 12.135 1.3156 14.7281 9.5419
CHD/Ms both 16.0055 1.3156 18.5986 13.4124
HMI/Ms both 11.9945 1.3156 14.5876 9.4014
JF1/MsJ both 2.0655 1.3156 4.6586 0.0
KJR/Ms both 9.3725 1.3156 11.9656 6.7794
MSM/MsJ both 10.5255 1.3156 13.1186 7.9324
NJL/Ms both 12.207 1.3156 14.8001 9.6139
PGN2/Ms both 13.689 1.3156 16.2821 11.0959
SWN/Ms both 14.8655 1.3156 17.4586 12.2724




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA