Project measure / variable:   Koide3   freezing

ID, description, units MPD:35911   freezing   stationary state lasting more than 3s, in 5s intervals over 10 min test   [n]  
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Koide3 - stationary state lasting more than 3s, in 5s intervals over 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means4.49   n 6.40   n
Median of the strain means4.90   n 4.30   n
SD of the strain means± 3.50 ± 7.23
Coefficient of variation (CV)0.779 1.13
Min–max range of strain means0   –   9.20   n 0   –   24.1   n
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 218.5042 218.5042 3.3923 0.0669
strain 11 5881.6458 534.6951 8.3011 < 0.0001
sex:strain 11 1208.0458 109.8223 1.705 0.0737
Residuals 216 13913.1 64.4125


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 4.5 10.5   10 3.33 2.34 0.0
BFM/2Ms m 3.9 5.57   10 1.76 1.43 -0.35
BLG2/Ms f 1.0 1.49   10 0.471 1.49 -1.0
BLG2/Ms m 0.9 1.52   10 0.482 1.69 -0.76
C57BL/6J f 0.0 0.0   10 0.0 0.0 -1.28
C57BL/6J m 0.0 0.0   10 0.0 0.0 -0.89
CAST/EiJ f 0.3 0.675   10 0.213 2.25 -1.2
CAST/EiJ m 0.1 0.316   10 0.1 3.16 -0.87
CHD/Ms f 9.2 11.8   10 3.73 1.28 1.35
CHD/Ms m 12.8 12.4   10 3.92 0.969 0.89
HMI/Ms f 7.7 13.0   10 4.11 1.69 0.92
HMI/Ms m 8.7 7.67   10 2.43 0.882 1.0, 21.0 0.32
JF1/MsJ f 8.4 12.9   10 4.09 1.54 1.12
JF1/MsJ m 24.1 16.8   10 5.32 0.698 1.0, 56.0 2.45
KJR/Ms f 1.7 1.95   10 0.616 1.15 -0.8
KJR/Ms m 1.8 2.78   10 0.879 1.54 -0.64
MSM/MsJ f 5.3 6.22   10 1.97 1.17 0.23
MSM/MsJ m 4.7 7.33   10 2.32 1.56 -0.24
NJL/Ms f 1.3 2.41   10 0.761 1.85 -0.91
NJL/Ms m 1.5 2.95   10 0.934 1.97 -0.68
PGN2/Ms f 8.5 6.42   10 2.03 0.755 1.15
PGN2/Ms m 13.3 13.3   10 4.2 0.998 0.95
SWN/Ms f 6.0 7.21   10 2.28 1.2 0.43
SWN/Ms m 5.0 6.27   10 1.98 1.25 -0.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 4.5 2.538 9.5023 -0.5023
BFM/2Ms m 3.9 2.538 8.9023 -1.1023
BLG2/Ms f 1.0 2.538 6.0023 -4.0023
BLG2/Ms m 0.9 2.538 5.9023 -4.1023
C57BL/6J f 0.0 2.538 5.0023 -5.0023
C57BL/6J m 0.0 2.538 5.0023 -5.0023
CAST/EiJ f 0.3 2.538 5.3023 -4.7023
CAST/EiJ m 0.1 2.538 5.1023 -4.9023
CHD/Ms f 9.2 2.538 14.2023 4.1977
CHD/Ms m 12.8 2.538 17.8023 7.7977
HMI/Ms f 7.7 2.538 12.7023 2.6977
HMI/Ms m 8.7 2.538 13.7023 3.6977
JF1/MsJ f 8.4 2.538 13.4023 3.3977
JF1/MsJ m 24.1 2.538 29.1023 19.0977
KJR/Ms f 1.7 2.538 6.7023 -3.3023
KJR/Ms m 1.8 2.538 6.8023 -3.2023
MSM/MsJ f 5.3 2.538 10.3023 0.2977
MSM/MsJ m 4.7 2.538 9.7023 -0.3023
NJL/Ms f 1.3 2.538 6.3023 -3.7023
NJL/Ms m 1.5 2.538 6.5023 -3.5023
PGN2/Ms f 8.5 2.538 13.5023 3.4977
PGN2/Ms m 13.3 2.538 18.3023 8.2977
SWN/Ms f 6.0 2.538 11.0023 0.9977
SWN/Ms m 5.0 2.538 10.0023 -0.0023


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 4.2 1.7946 7.7372 0.6628
BLG2/Ms both 0.95 1.7946 4.4872 -2.5872
C57BL/6J both 0.0 1.7946 3.5372 -3.5372
CAST/EiJ both 0.2 1.7946 3.7372 -3.3372
CHD/Ms both 11.0 1.7946 14.5372 7.4628
HMI/Ms both 8.2 1.7946 11.7372 4.6628
JF1/MsJ both 16.25 1.7946 19.7872 12.7128
KJR/Ms both 1.75 1.7946 5.2872 -1.7872
MSM/MsJ both 5.0 1.7946 8.5372 1.4628
NJL/Ms both 1.4 1.7946 4.9372 -2.1372
PGN2/Ms both 10.9 1.7946 14.4372 7.3628
SWN/Ms both 5.5 1.7946 9.0372 1.9628




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA