Phenotype measure:   Koide1   LA_DARK

ID, description, units MPD:1802   LA_DARK   number of beam breaks, dark 12h period   [n]
Data set, strains Koide1   wild-derived Mishima   11 strains     sex: f     age: 8-13wks
Procedure home cage monitoring
Ontology mappings


  STRAIN COMPARISON PLOT
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Koide1 - number of beam breaks, dark 12h period



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested11 strains
Mean of the strain means46081   n
Median of the strain means38604   n
SD of the strain means± 25232
Coefficient of variation (CV)0.548
Min–max range of strain means19665   –   89331   n
Mean sample size per strain10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 63664928259.7637 6366492825.9764 19.3369 < 0.0001
Residuals 99 32594842635.0 329240834.697


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 26250.0 18992.0   10 6006.0 0.724 5595.0, 56999.0 -0.79
BLG2/Ms f 27826.0 5187.0   10 1640.0 0.186 19373.0, 34993.0 -0.72
C57BL/6J f 38604.0 12513.0   10 3957.0 0.324 16707.0, 50717.0 -0.3
CAST/EiJ f 41753.0 19530.0   10 6176.0 0.468 11601.0, 71562.0 -0.17
DBA/1J f 28179.0 9119.0   10 2884.0 0.324 17162.0, 44679.0 -0.71
HMI/Ms f 23780.0 11867.0   10 3753.0 0.499 12123.0, 49782.0 -0.88
JF1/MsJ f 19665.0 12359.0   10 3908.0 0.628 9913.0, 53129.0 -1.05
KJR/Ms f 89331.0 13736.0   10 4344.0 0.154 65838.0, 104079.0 1.71
MSM/MsJ f 56849.0 11612.0   10 3672.0 0.204 31708.0, 72434.0 0.43
NJL/Ms f 84756.0 41685.0   10 13182.0 0.492 36842.0, 144945.0 1.53
SWN/Ms f 69903.0 16068.0   10 5081.0 0.23 52062.0, 99662.0 0.94


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 26250.1 5737.9512 37635.44 14864.76
BLG2/Ms f 27826.3 5737.9512 39211.64 16440.96
C57BL/6J f 38604.3 5737.9512 49989.64 27218.96
CAST/EiJ f 41752.6 5737.9512 53137.94 30367.26
DBA/1J f 28179.4 5737.9512 39564.74 16794.06
HMI/Ms f 23780.2 5737.9512 35165.54 12394.86
JF1/MsJ f 19665.3 5737.9512 31050.64 8279.96
KJR/Ms f 89331.2 5737.9512 100716.54 77945.86
MSM/MsJ f 56849.0 5737.9512 68234.34 45463.66
NJL/Ms f 84756.1 5737.9512 96141.44 73370.76
SWN/Ms f 69902.9 5737.9512 81288.24 58517.56




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.