Phenotype measure:   Koide1   LD_DARK



  STRAIN COMPARISON PLOT
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Koide1 - time in dark box



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested11 strains
Mean of the strain means443   s
Median of the strain means451   s
SD of the strain means± 35.9
Coefficient of variation (CV)0.0812
Min–max range of strain means382   –   487   s
Mean sample size per strain10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 128689.7362 12868.9736 1.7813 0.0738
Residuals 99 715219.101 7224.4354


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 382.0 103.0   10 32.7 0.271 240.0, 567.0 -1.68
BLG2/Ms f 457.0 60.7   10 19.2 0.133 340.0, 546.0 0.4
C57BL/6J f 451.0 50.2   10 15.9 0.111 360.0, 540.0 0.24
CAST/EiJ f 412.0 65.0   10 20.6 0.158 335.0, 554.0 -0.85
DBA/1J f 479.0 98.2   10 31.0 0.205 241.0, 591.0 1.01
HMI/Ms f 407.0 58.4   10 18.5 0.143 296.0, 488.0 -0.99
JF1/MsJ f 445.0 47.0   10 14.9 0.106 393.0, 546.0 0.07
KJR/Ms f 487.0 75.1   10 23.7 0.154 318.0, 598.0 1.24
MSM/MsJ f 487.0 57.2   10 18.1 0.118 376.0, 579.0 1.24
NJL/Ms f 406.0 158.0   10 49.9 0.388 166.0, 563.0 -1.02
SWN/Ms f 455.0 96.6   10 30.5 0.212 302.0, 598.0 0.35


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 381.98 26.8783 435.3124 328.6476
BLG2/Ms f 457.43 26.8783 510.7624 404.0976
C57BL/6J f 451.16 26.8783 504.4924 397.8276
CAST/EiJ f 412.09 26.8783 465.4224 358.7576
DBA/1J f 478.79 26.8783 532.1224 425.4576
HMI/Ms f 407.23 26.8783 460.5624 353.8976
JF1/MsJ f 444.7 26.8783 498.0324 391.3676
KJR/Ms f 486.6 26.8783 539.9324 433.2676
MSM/MsJ f 486.86 26.8783 540.1924 433.5276
NJL/Ms f 405.92 26.8783 459.2524 352.5876
SWN/Ms f 455.43 26.8783 508.7624 402.0976




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.