Phenotype measure:   Koide1   LA_LIGHT

ID, description, units MPD:1801   LA_LIGHT   number of beam breaks, light 12h period   [n]
Data set, strains Koide1   wild-derived Mishima   11 strains     sex: f     age: 8-13wks
Procedure home cage monitoring
Ontology mappings


  STRAIN COMPARISON PLOT
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Koide1 - number of beam breaks, light 12h period



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested11 strains
Mean of the strain means8359   n
Median of the strain means5085   n
SD of the strain means± 8934
Coefficient of variation (CV)1.07
Min–max range of strain means1853   –   32608   n
Mean sample size per strain10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 7981254542.0727 798125454.2073 44.6033 < 0.0001
Residuals 99 1771492666.7 17893865.3202


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 3444.0 2474.0   10 782.0 0.718 1234.0, 9960.0 -0.55
BLG2/Ms f 5002.0 1892.0   10 598.0 0.378 2412.0, 9041.0 -0.38
C57BL/6J f 4554.0 1652.0   10 522.0 0.363 2048.0, 6802.0 -0.43
CAST/EiJ f 32608.0 3657.0   10 1156.0 0.112 26710.0, 39536.0 2.71
DBA/1J f 2022.0 2059.0   10 651.0 1.02 739.0, 7700.0 -0.71
HMI/Ms f 5522.0 2885.0   10 912.0 0.522 2112.0, 11024.0 -0.32
JF1/MsJ f 1853.0 542.0   10 172.0 0.293 964.0, 2462.0 -0.73
KJR/Ms f 6159.0 4182.0   10 1322.0 0.679 1307.0, 12640.0 -0.25
MSM/MsJ f 5085.0 5747.0   10 1817.0 1.13 1347.0, 20402.0 -0.37
NJL/Ms f 10228.0 6088.0   10 1925.0 0.595 1610.0, 23502.0 0.21
SWN/Ms f 15472.0 8402.0   10 2657.0 0.543 2081.0, 28666.0 0.8


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 3443.9 1337.6795 6098.1464 789.6536
BLG2/Ms f 5001.5 1337.6795 7655.7464 2347.2536
C57BL/6J f 4554.5 1337.6795 7208.7464 1900.2536
CAST/EiJ f 32608.5 1337.6795 35262.7464 29954.2536
DBA/1J f 2022.1 1337.6795 4676.3464 0.0
HMI/Ms f 5521.7 1337.6795 8175.9464 2867.4536
JF1/MsJ f 1853.2 1337.6795 4507.4464 0.0
KJR/Ms f 6158.6 1337.6795 8812.8464 3504.3536
MSM/MsJ f 5084.6 1337.6795 7738.8464 2430.3536
NJL/Ms f 10228.0 1337.6795 12882.2464 7573.7536
SWN/Ms f 15471.9 1337.6795 18126.1464 12817.6536




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.