MPD: Measures involving CC RIX

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Graham1:1	Graham1	body weight	West Nile virus	body weight, post infection [g] bw 63301 day 0 day 3 day 6 day 8 day 9 day 10 day 11 day 12 day 13 day 14 (4 more)...	CC RIX	5	m	8-10wks	N=12	2015

Graham1:15	Graham1	health assessment	West Nile virus	clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection [score] clin_score 63315 day 0 day 3 day 6 day 8 day 9 day 10 day 11 day 12 day 13 day 14 (4 more)...	CC RIX	5	m	8-10wks	N=12	2015

Graham1:29	Graham1	immune cell quantification	West Nile virus	percentage of CD3+ T cells that are CD4+ in brain, post infection [%] CD4_brain 63329 day 7 day 12 day 21 day 28	CC RIX	5	m	8-10wks	N=3	2015

Graham1:33	Graham1	immune cell quantification	West Nile virus	percentage of CD3+ T cells that are CD4+ in spleen, post infection [%] CD4_spleen 63333 day 7 day 12 day 21 day 28	CC RIX	2	m	8-10wks	N=3	2015

Graham1:37	Graham1	immune cell quantification	West Nile virus	percentage of CD4+ T cells that are Foxp3+ in the brain, post infection [%] Treg_brain 63337 day 7 day 12 day 21 day 28	CC RIX	5	m	8-10wks	N=3	2015

Graham1:41	Graham1	immune cell quantification	West Nile virus	percentage of CD4+ T cells that are Foxp3+ in the spleen, post infection [%] Treg_spleen 63341 day 7 day 12 day 21 day 28	CC RIX	2	m	8-10wks	N=3	2015

Graham1:45	Graham1	immune cell quantification	West Nile virus	percentage of CD3+ T cells that are CD8+ in brain, post infection [%] CD8_brain 63345 day 7 day 12 day 21 day 28	CC RIX	5	m	8-10wks	N=3	2015

Graham1:49	Graham1	immune cell quantification	West Nile virus	percentage of CD3+ T cells that are CD8+ in spleen, post infection [%] CD8_spleen 63349 day 7 day 12 day 21 day 28	CC RIX	2	m	8-10wks	N=3	2015

Graham1:53	Graham1	immune cell quantification	West Nile virus	percentage of CD3+ T cells that are NS4b+ in brain, post infection [%] NS4b_brain 63353 day 7 day 12 day 21 day 28	CC RIX	5	m	8-10wks	N=3	2015

Graham1:57	Graham1	immune cell quantification	West Nile virus	percentage of CD3+ T cells that are NS4b+ in spleen, post infection [%] NS4b_spleen 63357 day 7 day 12 day 21 day 28	CC RIX	2	m	8-10wks	N=3	2015

Graham1:61	Graham1	immunoglobulin quantification	West Nile virus	virus-specific IgM in serum, post infection [ng/mL] WNV_IgM 63361 day 7 day 12 day 21 day 28	CC RIX	5	m	8-10wks	N=3	2015

Graham1:65	Graham1	RNA expression profiling	West Nile virus	virus in brain, fold change compared to matched control, post infection WNV_brain 63365 day 4 day 7 day 12	CC RIX	5	m	8-10wks	N=1	2015

Graham1:68	Graham1	RNA expression profiling	West Nile virus	virus in kidney, fold change compared to matched control, post infection WNV_kidney 63368 day 2 day 4 day 7 day 12	CC RIX	5	m	8-10wks	N=1	2015

Graham1:72	Graham1	RNA expression profiling	West Nile virus	virus in spleen, fold change compared to matched control, post infection WNV_spleen 63372 day 2 day 4 day 7 day 12	CC RIX	5	m	8-10wks	N=1	2015

Graham1:76	Graham1	RNA expression profiling	West Nile virus	Ifnb1 gene expression in brain, fold change compared to matched control, post infection Ifnb1_brain 63376 day 4 day 7 day 12	CC RIX	5	m	8-10wks	N=1	2015

Graham1:79	Graham1	RNA expression profiling	West Nile virus	Ifnb1 gene expression in kidney, fold change compared to matched control, post infection Ifnb1_kidney 63379 day 2 day 4 day 7 day 12	CC RIX	5	m	8-10wks	N=1	2015

Graham1:83	Graham1	RNA expression profiling	West Nile virus	Ifnb1 gene expression in spleen, fold change compared to matched control, post infection Ifnb1_spleen 63383 day 2 day 4 day 7 day 12	CC RIX	5	m	8-10wks	N=1	2015

Graham1:87	Graham1	RNA expression profiling	West Nile virus	Ifit1 gene expression in brain, fold change compared to matched control, post infection Ifit1_brain 63387 day 4 day 7 day 12	CC RIX	5	m	8-10wks	N=1	2015

Graham1:90	Graham1	RNA expression profiling	West Nile virus	Ifit1 gene expression in kidney, fold change compared to matched control, post infection Ifit1_kidney 63390 day 2 day 4 day 7 day 12	CC RIX	5	m	8-10wks	N=1	2015

Graham1:94	Graham1	RNA expression profiling	West Nile virus	Ifit1 gene expression in spleen, fold change compared to matched control, post infection Ifit1_spleen 63394 day 2 day 4 day 7 day 12	CC RIX	5	m	8-10wks	N=1	2015

Graham2:1	Graham2	None	(none)	submitted_strain submitted_strain 113785 categorical informational	CC RIX	117	f			2021

Graham2:2	Graham2	None	(none)	strain_long_name strain_long_name 113786 categorical informational	CC RIX	117	f			2021

Graham2:3	Graham2	colony observation	SARS-CoV	body weight loss and survival score (1=0-5% loss, 2=5-15% loss, 3=greater than 15% loss and death) [score] weight_score 113787	CC RIX	117	f	8-10wks		2021

Graham2:4	Graham2	None	(none)	titer_d2_raw titer_d2_raw 113788 informational	CC RIX	105	f			2021

Graham2:5	Graham2	None	(none)	titer_d4_raw titer_d4_raw 113789 informational	CC RIX	102	f			2021

Graham2:6	Graham2	in vitro assay	SARS-CoV	lung viral load titer (log10(x+1)), post infection [log(n)] log_titer 113790 post infection: day 2 day 4	CC RIX	111	f	8-10wks		2021

Graham3:1	Graham3	None	(none)	strain_long_name strain_long_name 113792 categorical informational	CC RIX	104	m		N=5	2021

Graham3:2	Graham3	None	(none)	submitted_strain submitted_strain 113793 categorical informational	CC RIX	104	m		N=5	2021

Graham3:3	Graham3	None	(none)	submitted_id submitted_id 113794 informational	CC RIX	104	m		N=5	2021

Graham3:4	Graham3	None	(none)	spleen_count_total spleen_count_total 113795 informational	CC RIX	104	m		N=5	2021

Graham3:5	Graham3	None	(none)	Treg_time Treg_time 113796 informational	CC RIX	102	m		N=4	2021

Graham3:6	Graham3	None	(none)	Treg_singlets Treg_singlets 113797 informational	CC RIX	102	m		N=4	2021

Graham3:7	Graham3	None	(none)	Treg_live Treg_live 113798 informational	CC RIX	102	m		N=4	2021

Graham3:8	Graham3	None	(none)	Treg_lymphocytes Treg_lymphocytes 113799 informational	CC RIX	102	m		N=4	2021

Graham3:9	Graham3	immune cell quantification	(none)	percentage of splenic lymphocytes that are CD4+ T cells [%] CD4_pos_tot 113800	CC RIX	102	m	8-10wks	N=4	2021

Graham3:10	Graham3	immune cell quantification	(none)	percentage of splenic CD4+ T cells that are Foxp3+ (Treg) [%] Tregs 113801	CC RIX	102	m	8-10wks	N=4	2021

Graham3:11	Graham3	immune cell quantification	(none)	percentage of splenic Treg cells that are CD29+ [%] Treg_CD29_pos 113802	CC RIX	102	m	8-10wks	N=4	2021

Graham3:12	Graham3	immune cell quantification	(none)	percentage of splenic Treg cells that are CD44hi [%] Treg_CD44_hi 113803	CC RIX	102	m	8-10wks	N=4	2021

Graham3:13	Graham3	immune cell quantification	(none)	percentage of splenic Treg cells that are CD73+ [%] Treg_CD73_pos 113804	CC RIX	102	m	8-10wks	N=4	2021

Graham3:14	Graham3	immune cell quantification	(none)	percentage of splenic Treg cells that are CTLA-4+ [%] Treg_CTLA4_pos 113805	CC RIX	102	m	8-10wks	N=4	2021

Graham3:15	Graham3	immune cell quantification	(none)	percentage of splenic Treg cells that are CXCR3+ [%] Treg_CXCR3_pos 113806	CC RIX	102	m	8-10wks	N=4	2021

Graham3:16	Graham3	immune cell quantification	(none)	percentage of splenic Treg cells that are ICOS+ (inducible costimulator) [%] Treg_ICOS_pos 113807	CC RIX	102	m	8-10wks	N=4	2021

Graham3:17	Graham3	None	(none)	mp_time mp_time 113808 informational	CC RIX	92	m		N=4	2021

Graham3:18	Graham3	None	(none)	mp_singlet mp_singlet 113809 informational	CC RIX	92	m		N=4	2021

Graham3:19	Graham3	None	(none)	mp_live mp_live 113810 informational	CC RIX	92	m		N=4	2021

Graham3:20	Graham3	None	(none)	mp_lymphocytes mp_lymphocytes 113811 informational	CC RIX	92	m		N=4	2021

Graham3:21	Graham3	immune cell quantification	(none)	percentage of splenic lymphocytes that are CD3+ T cells (memory precursor panel) [%] mp_CD3_pos 113812	CC RIX	92	m	8-10wks	N=4	2021

Graham3:22	Graham3	immune cell quantification	(none)	percentage of splenic CD3+ T cells that are CD8+ (memory precursor panel) [%] mp_CD3_pos_CD8_pos 113813	CC RIX	92	m	8-10wks	N=4	2021

Graham3:23	Graham3	immune cell quantification	(none)	percentage of splenic CD8+ T cells that are CD44+ (memory precursor panel) [%] mp_CD8_pos_CD44_pos 113814	CC RIX	91	m	8-10wks	N=4	2021

Graham3:24	Graham3	immune cell quantification	(none)	percentage of splenic CD8+ T cells that are CD62L- (memory precursor panel) [%] mp_CD8_pos_CD62L_neg 113815	CC RIX	76	m	8-10wks	N=3	2021

Graham3:25	Graham3	immune cell quantification	(none)	percentage of splenic CD8+ T cells that are Ki67+ (memory precursor panel) [%] mp_CD8_pos_Ki67_pos 113816	CC RIX	92	m	8-10wks	N=4	2021

Graham3:26	Graham3	immune cell quantification	(none)	percentage of splenic CD3+ T cells that are CD4+ (memory precursor panel) [%] mp_CD3_pos_CD4_pos 113817	CC RIX	92	m	8-10wks	N=4	2021

Graham3:27	Graham3	immune cell quantification	(none)	percentage of splenic CD4+ T cells that are CD44+ (memory precursor panel) [%] mp_CD4_pos_CD44_pos 113818	CC RIX	91	m	8-10wks	N=4	2021

Graham3:28	Graham3	immune cell quantification	(none)	percentage of splenic CD4+ T cells that are CD62L- (memory precursor panel) [%] mp_CD4_pos_CD62L_neg 113819	CC RIX	73	m	8-10wks	N=3	2021

Graham3:29	Graham3	immune cell quantification	(none)	percentage of splenic CD4+ T cells that are Ki67+ (memory precursor panel) [%] mp_CD4_pos_Ki67_pos 113820	CC RIX	92	m	8-10wks	N=4	2021

Graham3:30	Graham3	None	(none)	mem_time mem_time 113821 informational	CC RIX	73	m		N=3	2021

Graham3:31	Graham3	None	(none)	mem_singlets mem_singlets 113822 informational	CC RIX	73	m		N=3	2021

Graham3:32	Graham3	None	(none)	mem_live mem_live 113823 informational	CC RIX	73	m		N=3	2021

Graham3:33	Graham3	None	(none)	mem_lymphocytes mem_lymphocytes 113824 informational	CC RIX	73	m		N=3	2021

Graham3:34	Graham3	immune cell quantification	(none)	percentage of splenic lymphocytes that are CD3+ T cells (memory panel) [%] mem_CD3_pos 113825	CC RIX	68	m	8-10wks	N=3	2021

Graham3:35	Graham3	immune cell quantification	(none)	percentage of splenic CD3+ T cells that are CD8+ (memory panel) [%] mem_CD3_pos_CD8_pos 113826	CC RIX	68	m	8-10wks	N=3	2021

Graham3:36	Graham3	immune cell quantification	(none)	percentage of splenic CD8+ T cells that are CD44+ (memory panel) [%] mem_CD8_pos_CD44_pos 113827	CC RIX	73	m	8-10wks	N=3	2021

Graham3:37	Graham3	immune cell quantification	(none)	percentage of splenic CD8+ T cells that are CD62L- (memory panel) [%] mem_CD8_pos_CD62L_neg 113828	CC RIX	68	m	8-10wks	N=3	2021

Graham3:38	Graham3	immune cell quantification	(none)	percentage of splenic CD8+ T cells that are Ki67+ (memory panel) [%] mem_CD8_pos_Ki67_pos 113829	CC RIX	73	m	8-10wks	N=3	2021

Graham3:39	Graham3	immune cell quantification	(none)	percentage of splenic CD3+ T cells that are CD4+ (memory panel) [%] mem_CD3_pos_CD4_pos 113830	CC RIX	68	m	8-10wks	N=3	2021

Graham3:40	Graham3	immune cell quantification	(none)	percentage of splenic CD4+ T cells that are CD44+ (memory panel) [%] mem_CD4_pos_CD44_pos 113831	CC RIX	73	m	8-10wks	N=3	2021

Graham3:41	Graham3	immune cell quantification	(none)	percentage of splenic CD4+ T cells that are CD62L- (memory panel) [%] mem_CD4_pos_CD62L_neg 113832	CC RIX	68	m	8-10wks	N=3	2021

Graham3:42	Graham3	immune cell quantification	(none)	percentage of splenic CD4+ T cells that are Ki67+ (memory panel) [%] mem_CD4_pos_Ki67_pos 113833	CC RIX	73	m	8-10wks	N=3	2021

Graham3:43	Graham3	None	(none)	ics_time ics_time 113834 informational	CC RIX	102	m		N=4	2021

Graham3:44	Graham3	None	(none)	ics_singlets ics_singlets 113835 informational	CC RIX	102	m		N=4	2021

Graham3:45	Graham3	None	(none)	ics_live ics_live 113836 informational	CC RIX	102	m		N=4	2021

Graham3:46	Graham3	None	(none)	ics_lymphocytes ics_lymphocytes 113837 informational	CC RIX	102	m		N=4	2021

Graham3:47	Graham3	immune cell quantification	(none)	percentage of splenic lymphocytes that are CD3+ T cells following stimulation with anti-CD3 and anti CD28 [%] ics_CD3_pos 113838	CC RIX	102	m	8-10wks	N=4	2021

Graham3:48	Graham3	immune cell quantification	(none)	percentage of splenic CD3+ T cells that are CD8+ following stimulation with anti-CD3 and anti-CD28 [%] ics_CD3_pos_CD8_pos 113839	CC RIX	102	m	8-10wks	N=4	2021

Graham3:49	Graham3	immune cell quantification	(none)	percentage of splenic CD8+ T cells that are IL-17+ by intracellular cytokine staining following stimulation with anti-CD3 and anti-CD28 [%] ics_CD8_pos_IL17_pos 113840	CC RIX	102	m	8-10wks	N=4	2021

Graham3:50	Graham3	immune cell quantification	(none)	percentage of splenic CD8+ T cells that are IFNg+ by intracellular cytokine staining following stimulation with anti-CD3 and anti-CD28 [%] ics_CD8_pos_IGNg_pos 113841	CC RIX	102	m	8-10wks	N=4	2021

Graham3:51	Graham3	immune cell quantification	(none)	percentage of splenic CD3+ T cells that are CD4+ following stimulation with anti-CD3 and anti-CD28 [%] ics_CD3_pos_CD4_pos 113842	CC RIX	102	m	8-10wks	N=4	2021

Graham3:52	Graham3	immune cell quantification	(none)	percentage of splenic CD4+ T cells that are IL-17+ by intracellular cytokine staining following stimulation with anti-CD3 and anti-CD28 [%] ics_CD4_pos_IL17_pos 113843	CC RIX	102	m	8-10wks	N=4	2021

Graham3:53	Graham3	immune cell quantification	(none)	percentage of splenic CD4+ T cells that are IFNg+ by intracellular cytokine staining following stimulation with anti-CD3 and anti-CD28 [%] ics_CD4_pos_IFNg_pos 113844	CC RIX	102	m	8-10wks	N=4	2021

Graham3:54	Graham3	immune cell quantification	(none)	percentage of splenic CD4+ T cells that are Tbet+ (transcription factor) by intracellular staining following stimulation with anti-CD3 and anti-CD28 [%] ics_CD4_pos_Tbet_pos 113845	CC RIX	92	m	8-10wks	N=4	2021

Noll1:1	Noll1	None	influenza A (H1N1) virus	dam dam 112577 categorical informational d7 d10 d15 d29 d45	CC RIX	46	f		N=4	2020

Noll1:6	Noll1	None	influenza A (H1N1) virus	sire sire 112582 categorical informational d7 d10 d15 d29 d45	CC RIX	46	f		N=4	2020

Noll1:11	Noll1	None	influenza A (H1N1) virus	submitted_strain submitted_strain 112587 categorical informational d7 d10 d15 d29 d45	CC RIX	46	f		N=4	2020

Noll1:16	Noll1	None	influenza A (H1N1) virus	submitted_id submitted_id 112592 informational d7 d10 d15 d29 d45	CC RIX	46	f		N=4	2020

Noll1:21	Noll1	None	influenza A (H1N1) virus	antigen antigen 112597 categorical informational d7 d10 d15 d29 d45	CC RIX	46	f		N=4	2020

Noll1:26	Noll1	immunoglobulin quantification	influenza A (H1N1) virus	immunoglobulin M (serum IgM) area under curve (AUC) post-infection [AUC] IgM 112602 post-infection: day 7 day 10 day 15 day 29 day 45	CC RIX	46	f	8-12 wks	N=4	2020

Noll1:31	Noll1	immunoglobulin quantification	influenza A (H1N1) virus	immunoglobulin G1 (serum IgG1) area under curve (AUC) post-infection [AUC] IgG1 112607 post-infection: day 7 day 10 day 15 day 29 day 45	CC RIX	46	f	8-12 wks	N=4	2020

Noll1:36	Noll1	immunoglobulin quantification	influenza A (H1N1) virus	immunoglobulin G2a plus G2c (serum IgG2a pooled with IgG2c) area under curve (AUC) post-infection [AUC] IgG2ac 112612 post-infection: day 7 day 10 day 15 day 29 day 45	CC RIX	46	f	8-12 wks	N=4	2020

Noll1:41	Noll1	immunoglobulin quantification	influenza A (H1N1) virus	immunoglobulin G2b (serum IgG2b) area under curve (AUC) post-infection [AUC] IgG2b 112617 post-infection: day 7 day 10 day 15 day 29 day 45	CC RIX	46	f	8-12 wks	N=3	2020

Noll1:46	Noll1	immunoglobulin quantification	influenza A (H1N1) virus	immunoglobulin G3 (serum IgG3) area under curve (AUC) post-infection [AUC] IgG3 112622 post-infection: day 7 day 10 day 15 day 29 day 45	CC RIX	46	f	8-12 wks	N=4	2020

Noll1:51	Noll1	immunoglobulin quantification	influenza A (H1N1) virus	total immunoglobulin G (serum IgG) area under curve (AUC) post-infection [AUC] Total_IgG 112627 post-infection: day 7 day 10 day 15 day 29 day 45	CC RIX	44	f	8-12 wks	N=3	2020

Schoenrock1:2	Schoenrock1	body weight	various diets	body weight at weaning [g] bw_d21 61202 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	3wks	N=11	2018

Schoenrock1:6	Schoenrock1	body weight	various diets	body weight at start of testing [g] bw_d60 61206 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:10	Schoenrock1	body weight	various diets	body weight change (start of testing minus weaning) [g] bw_chg 61210 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:14	Schoenrock1	open field test	various diets	number of fecal boli, 10 min test [g] OF_boli 61214 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:18	Schoenrock1	open field test	various diets	total distance traveled, 10 min test [cm] OF_dist 61218 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=10	2018

Schoenrock1:22	Schoenrock1	open field test	various diets	number of vertical movements (rearing), 10 min test [n] OF_vert 61222 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=10	2018

Schoenrock1:26	Schoenrock1	open field test	various diets	percentage of time in center of arena, 10 min test [%] OF_center 61226 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=10	2018

Schoenrock1:30	Schoenrock1	light-dark box	various diets	number of fecal boli, 10 min test [n] LD_boli 61230 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:34	Schoenrock1	light-dark box	various diets	number of transitions between light and dark sides, 10 min test [n] LD_trans 61234 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:38	Schoenrock1	light-dark box	various diets	distance traveled in dark side, 10 min test [cm] LD_dist_dk 61238 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:42	Schoenrock1	light-dark box	various diets	distance traveled in light side, 10 min test [cm] LD_dist_lt 61242 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:46	Schoenrock1	light-dark box	various diets	total distance traveled (dark + light), 10 min test [cm] LD_dist_tot 61246 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:50	Schoenrock1	light-dark box	various diets	percentage of time in light side, 10 min test [%] LD_pct_lt 61250 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:54	Schoenrock1	body temperature	various diets	basal body temperature [°C] SIH_temp1 61254 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:58	Schoenrock1	body temperature	various diets	body temperature taken 10 min after stress of taking basal temperature [°C] SIH_temp2 61258 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:62	Schoenrock1	body temperature	various diets	change in temperature (stress minus basal) [°C] SIH_temp_chg 61262 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:66	Schoenrock1	forced swim test	various diets	number of fecal boli, 6 min test [n] FST_boli 61266 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:70	Schoenrock1	forced swim test	various diets	percentage of time spent immobile in the last 4 mins, 6 min test [%] FST_immobile 61270 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:74	Schoenrock1	hormone quantification	various diets	basal serum corticosterone [ng/mL] CORT_basal 61274 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:78	Schoenrock1	hormone quantification	various diets	serum corticosterone after 10 min restraint stress [ng/mL] CORT_stress 61278 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:82	Schoenrock1	hormone quantification	various diets	change in serum corticosterone (stress minus basal) [ng/mL] CORT_chg 61282 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Shorter5:1	Shorter5	body weight	(none)	body weight [g] bw 110118	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:2	Shorter5	organ weights	(none)	testis weight [g] testis 110143 left right	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:4	Shorter5	organ weights	(none)	testis weight mean [g] testis_mean 110121	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:5	Shorter5	organ weights	(none)	testis weight as percentage of body weight [%] testis_pct_bw 110122	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:6	Shorter5	organ weights	(none)	epididymis plus vas deferens weight [g] epidid_vd 110145 left right	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:8	Shorter5	organ weights	(none)	epididymis plus vas deferens weight mean [g] epidid_vd_mean 110125	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:9	Shorter5	organ weights	(none)	epididymis plus vas deferens weight as percentage of body weight [%] epidid_vd_pct_bw 110126	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:10	Shorter5	organ weights	(none)	seminal vesicles weight total [g] semin_vesi_tot 110127	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:11	Shorter5	organ weights	(none)	seminal vesicles weight as percentage of body weight [%] semin_vesi_pct_bw 110128	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:12	Shorter5	sperm count	(none)	sperm count per mouse (x 10⁶) [n] sperm_count 110129	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:13	Shorter5	sperm count	(none)	sperm count per mg testis weight (x 10³) [n/mg] sperm_adj 110130	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:14	Shorter5	microscopy	(none)	percentage of sperm that are motile [%] motile 110147 10 min 90 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:16	Shorter5	microscopy	(none)	percentage of motile sperm that are 'vigorous' [%] vigorous 110149 10 min 90 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:18	Shorter5	microscopy	(none)	percentage of motile sperm that are 'hyperactivated' [%] hyper 110151 10 min 90 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:20	Shorter5	microscopy	(none)	sperm mean curvilinear velocity [µm/s] VCL 110153 10 min 90 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:22	Shorter5	histopathology	(none)	percentage of sperm with normal morphology [%] normal_sperm 110139	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:23	Shorter5	histopathology	(none)	percentage of sperm with abnormal head shape [%] abnormal_head 110140	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:24	Shorter5	histopathology	(none)	percentage of sperm with abnormal tail bending [%] abnormal_tail 110141	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:25	Shorter5	histopathology	(none)	percentage of sperm with broken tails [%] broken_tail 110142	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:1	Shorter7	microscopy	(none)	percentage of sperm that are motile [%] sperm_motile 65701 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:6	Shorter7	microscopy	(none)	percentage of motile sperm that are 'vigorous' [%] sperm_vigor 65706 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:11	Shorter7	microscopy	(none)	percentage of motile sperm that are 'progressive' [%] sperm_prog 65711 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:16	Shorter7	microscopy	(none)	percentage of motile sperm that are 'hyperactivated' [%] sperm_hyper 65716 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:21	Shorter7	microscopy	(none)	percentage of motile sperm that are 'intermediate' [%] sperm_int 65721 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:26	Shorter7	microscopy	(none)	percentage of motile sperm that are 'slow' [%] sperm_slow 65726 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:31	Shorter7	microscopy	(none)	percentage of motile sperm that are 'weak' [%] sperm_weak 65731 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:36	Shorter7	microscopy	(none)	sperm mean path velocity [µm/s] sperm_VAP 65736 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:41	Shorter7	microscopy	(none)	sperm mean straight line velocity [µm/s] sperm_VSL 65741 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:46	Shorter7	microscopy	(none)	sperm mean curvilinear velocity [µm/s] sperm_VCL 65746 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:51	Shorter7	microscopy	(none)	sperm mean lateral head displacement (amplitude) [µm] sperm_ALH 65751 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:56	Shorter7	microscopy	(none)	sperm mean cross beat frequency [Hz] sperm_BCF 65756 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:61	Shorter7	microscopy	(none)	sperm mean straightness [ratio] sperm_STR 65761 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:66	Shorter7	microscopy	(none)	sperm mean linearity [ratio] sperm_LIN 65766 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Xenakis1:1	Xenakis1	None	(none)	batch [] batch 111144 informational	CC RIX	73	both		N=6	2020

Xenakis1:2	Xenakis1	None	(none)	cage cage 111145 categorical informational	CC RIX	73	both		N=6	2020

Xenakis1:3	Xenakis1	None	(none)	dam dam 111146 categorical informational	CC RIX	73	both		N=6	2020

Xenakis1:4	Xenakis1	None	(none)	sire sire 111147 categorical informational	CC RIX	73	both		N=6	2020

Xenakis1:5	Xenakis1	None	(none)	strain_long_name strain_long_name 111148 categorical informational	CC RIX	73	both		N=6	2020

Xenakis1:6	Xenakis1	None	(none)	treatment treatment 111149 categorical informational	CC RIX	73	both		N=6	2020

Xenakis1:7	Xenakis1	body weight	(none)	body weight, placebo group [g] bw_cont 111150 pre-treatment post-treatment	CC RIX	73	both	7-13wks	N=3	2020

Xenakis1:9	Xenakis1	body weight	haloperidol	body weight, treatment group [g] bw_Rx 111152 pre-treatment post-treatment	CC RIX	73	both	7-13wks	N=3	2020

Xenakis1:11	Xenakis1	inclined screen test	(none)	latency to move all four paws (extrapyramidal symptoms), placebo group [s] latency_cont 111154 pre-treatment post-treatment	CC RIX	73	both	7-9wks	N=3	2020

Xenakis1:13	Xenakis1	inclined screen test	haloperidol	latency to move all four paws (extrapyramidal symptoms), treatment group [s] latency_Rx 111156 pre-treatment post-treatment	CC RIX	73	both	7-9wks	N=3	2020

Xenakis1:15	Xenakis1	open field test	(none)	distance traveled, 30 min test, placebo group [cm] distance_cont 111158 pre-treatment post-treatment	CC RIX	73	both	7-13wks	N=3	2020

Xenakis1:17	Xenakis1	open field test	haloperidol	distance traveled, 30 min test, treatment group [cm] distance_Rx 111160 pre-treatment post-treatment	CC RIX	73	both	7-13wks	N=3	2020

Xenakis1:19	Xenakis1	open field test	(none)	vertical activity (beam breaks), 30 min test, placebo group [n] vertical_cont 111162 pre-treatment post-treatment	CC RIX	73	both	7-13wks	N=3	2020

Xenakis1:21	Xenakis1	open field test	haloperidol	vertical activity (beam breaks), 30 min test, treatment group [n] vertical_Rx 111164 pre-treatment post-treatment	CC RIX	73	both	7-13wks	N=3	2020

Xenakis1:23	Xenakis1	open field test	(none)	time spent in center of arena, 30 min test, placebo group [s] center_cont 111166 pre-treatment post-treatment	CC RIX	73	both	7-13wks	N=3	2020

Xenakis1:25	Xenakis1	open field test	haloperidol	time spent in center of arena, 30 min test, treatment group [s] center_Rx 111168 pre-treatment post-treatment	CC RIX	73	both	7-13wks	N=3	2020

Xenakis1:27	Xenakis1	open field test	(none)	stereotypy activity (beam breaks), 30 min test, placebo group [n] stereotypy_cont 111170 pre-treatment post-treatment	CC RIX	73	both	7-13wks	N=3	2020

Xenakis1:29	Xenakis1	open field test	haloperidol	stereotypy activity (beam breaks), 30 min test, treatment group [n] stereotypy_Rx 111172 pre-treatment post-treatment	CC RIX	73	both	7-13wks	N=3	2020

Xenakis1:31	Xenakis1	behavior observation	haloperidol	subtle vacuous chewing movements, 15 min test, treatment group, post-treatment [n] subtle_vcm_Rx_post 111174	CC RIX	73	both	11-13wks	N=5	2020

Xenakis1:32	Xenakis1	behavior observation	haloperidol	overt vacuous chewing movements, 15 min test, treatment group, post-treatment [n] overt_vcm_Rx_post 111175	CC RIX	73	both	11-13wks	N=5	2020

Xenakis1:33	Xenakis1	behavior observation	haloperidol	tongue protrusions, 15 min test, treatment group, post-treatment [n] tongue_Rx_post 111176	CC RIX	73	both	11-13wks	N=5	2020

Xenakis1:34	Xenakis1	behavior observation	haloperidol	jaw tremors, 15 min test, treatment group, post-treatment [n] jawtremor_Rx_post 111177	CC RIX	73	both	11-13wks	N=5	2020

Xenakis1:35	Xenakis1	behavior observation	(none)	length of video analysis for vacuous chewing movements, treatment group, post-treatment analyzed_duration_Rx_post 111178 informational	CC RIX	73	both		N=5	2020

Xenakis1:36	Xenakis1	drug and metabolite quantification	haloperidol	plasma haloperidol concentration, treatment group, post-treatment [ng/dL] haloperidol_conc_post 111179	CC RIX	53	both	11-13wks	N=2	2020

Graham1

body weight

West Nile virus

body weight, post infection [g] bw 63301 day 0 day 3 day 6 day 8 day 9 day 10 day 11 day 12 day 13 day 14 (4 more)...

CC RIX

5

m

8-10wks

N=12

2015

Graham1

health assessment

West Nile virus

clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection [score] clin_score 63315 day 0 day 3 day 6 day 8 day 9 day 10 day 11 day 12 day 13 day 14 (4 more)...

CC RIX

5

m

8-10wks

N=12

2015

Graham1

immune cell quantification

West Nile virus

percentage of CD3+ T cells that are CD4+ in brain, post infection [%] CD4_brain 63329 day 7 day 12 day 21 day 28

CC RIX

5

m

8-10wks

N=3

2015

Graham1

immune cell quantification

West Nile virus

percentage of CD3+ T cells that are CD4+ in spleen, post infection [%] CD4_spleen 63333 day 7 day 12 day 21 day 28

CC RIX

2

m

8-10wks

N=3

2015

Graham1

immune cell quantification

West Nile virus

percentage of CD4+ T cells that are Foxp3+ in the brain, post infection [%] Treg_brain 63337 day 7 day 12 day 21 day 28

CC RIX

5

m

8-10wks

N=3

2015

Graham1

immune cell quantification

West Nile virus

percentage of CD4+ T cells that are Foxp3+ in the spleen, post infection [%] Treg_spleen 63341 day 7 day 12 day 21 day 28

CC RIX

2

m

8-10wks

N=3

2015

Graham1

immune cell quantification

West Nile virus

percentage of CD3+ T cells that are CD8+ in brain, post infection [%] CD8_brain 63345 day 7 day 12 day 21 day 28

CC RIX

5

m

8-10wks

N=3

2015

Graham1

immune cell quantification

West Nile virus

percentage of CD3+ T cells that are CD8+ in spleen, post infection [%] CD8_spleen 63349 day 7 day 12 day 21 day 28

CC RIX

2

m

8-10wks

N=3

2015

Graham1

immune cell quantification

West Nile virus

percentage of CD3+ T cells that are NS4b+ in brain, post infection [%] NS4b_brain 63353 day 7 day 12 day 21 day 28

CC RIX

5

m

8-10wks

N=3

2015

Graham1

immune cell quantification

West Nile virus

percentage of CD3+ T cells that are NS4b+ in spleen, post infection [%] NS4b_spleen 63357 day 7 day 12 day 21 day 28

CC RIX

2

m

8-10wks

N=3

2015

Graham1

immunoglobulin quantification

West Nile virus

virus-specific IgM in serum, post infection [ng/mL] WNV_IgM 63361 day 7 day 12 day 21 day 28

CC RIX

5

m

8-10wks

N=3

2015

Graham1

RNA expression profiling

West Nile virus

virus in brain, fold change compared to matched control, post infection WNV_brain 63365 day 4 day 7 day 12

CC RIX

5

m

8-10wks

N=1

2015

Graham1

RNA expression profiling

West Nile virus

virus in kidney, fold change compared to matched control, post infection WNV_kidney 63368 day 2 day 4 day 7 day 12

CC RIX

5

m

8-10wks

N=1

2015

Graham1

RNA expression profiling

West Nile virus

virus in spleen, fold change compared to matched control, post infection WNV_spleen 63372 day 2 day 4 day 7 day 12

CC RIX

5

m

8-10wks

N=1

2015

Graham1

RNA expression profiling

West Nile virus

Ifnb1 gene expression in brain, fold change compared to matched control, post infection Ifnb1_brain 63376 day 4 day 7 day 12

CC RIX

5

m

8-10wks

N=1

2015

Graham1

RNA expression profiling

West Nile virus

Ifnb1 gene expression in kidney, fold change compared to matched control, post infection Ifnb1_kidney 63379 day 2 day 4 day 7 day 12

CC RIX

5

m

8-10wks

N=1

2015

Graham1

RNA expression profiling

West Nile virus

Ifnb1 gene expression in spleen, fold change compared to matched control, post infection Ifnb1_spleen 63383 day 2 day 4 day 7 day 12

CC RIX

5

m

8-10wks

N=1

2015

Graham1

RNA expression profiling

West Nile virus

Ifit1 gene expression in brain, fold change compared to matched control, post infection Ifit1_brain 63387 day 4 day 7 day 12

CC RIX

5

m

8-10wks

N=1

2015

Graham1

RNA expression profiling

West Nile virus

Ifit1 gene expression in kidney, fold change compared to matched control, post infection Ifit1_kidney 63390 day 2 day 4 day 7 day 12

CC RIX

5

m

8-10wks

N=1

2015

Graham1

RNA expression profiling

West Nile virus

Ifit1 gene expression in spleen, fold change compared to matched control, post infection Ifit1_spleen 63394 day 2 day 4 day 7 day 12

CC RIX

5

m

8-10wks

N=1

2015

Graham2

None

(none)

submitted_strain submitted_strain 113785 categorical informational

CC RIX

117

f

2021

Graham2

None

(none)

strain_long_name strain_long_name 113786 categorical informational

CC RIX

117

f

2021

Graham2

colony observation

SARS-CoV

body weight loss and survival score (1=0-5% loss, 2=5-15% loss, 3=greater than 15% loss and death) [score] weight_score 113787

CC RIX

117

f

8-10wks

2021

Graham2

None

(none)

titer_d2_raw titer_d2_raw 113788 informational

CC RIX

105

f

2021

Graham2

None

(none)

titer_d4_raw titer_d4_raw 113789 informational

CC RIX

102

f

2021

Graham2

in vitro assay

SARS-CoV

lung viral load titer (log10(x+1)), post infection [log(n)] log_titer 113790 post infection: day 2 day 4

CC RIX

111

f

8-10wks

2021

Graham3

None

(none)

strain_long_name strain_long_name 113792 categorical informational

CC RIX

104

m

N=5

2021

Graham3

None

(none)

submitted_strain submitted_strain 113793 categorical informational

CC RIX

104

m

N=5

2021

Graham3

None

(none)

submitted_id submitted_id 113794 informational

CC RIX

104

m

N=5

2021

Graham3

None

(none)

spleen_count_total spleen_count_total 113795 informational

CC RIX

104

m

N=5

2021

Graham3

None

(none)

Treg_time Treg_time 113796 informational

CC RIX

102

m

N=4

2021

Graham3

None

(none)

Treg_singlets Treg_singlets 113797 informational

CC RIX

102

m

N=4

2021

Graham3

None

(none)

Treg_live Treg_live 113798 informational

CC RIX

102

m

N=4

2021

Graham3

None

(none)

Treg_lymphocytes Treg_lymphocytes 113799 informational

CC RIX

102

m

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic lymphocytes that are CD4+ T cells [%] CD4_pos_tot 113800

CC RIX

102

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD4+ T cells that are Foxp3+ (Treg) [%] Tregs 113801

CC RIX

102

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic Treg cells that are CD29+ [%] Treg_CD29_pos 113802

CC RIX

102

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic Treg cells that are CD44hi [%] Treg_CD44_hi 113803

CC RIX

102

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic Treg cells that are CD73+ [%] Treg_CD73_pos 113804

CC RIX

102

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic Treg cells that are CTLA-4+ [%] Treg_CTLA4_pos 113805

CC RIX

102

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic Treg cells that are CXCR3+ [%] Treg_CXCR3_pos 113806

CC RIX

102

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic Treg cells that are ICOS+ (inducible costimulator) [%] Treg_ICOS_pos 113807

CC RIX

102

m

8-10wks

N=4

2021

Graham3

None

(none)

mp_time mp_time 113808 informational

CC RIX

92

m

N=4

2021

Graham3

None

(none)

mp_singlet mp_singlet 113809 informational

CC RIX

92

m

N=4

2021

Graham3

None

(none)

mp_live mp_live 113810 informational

CC RIX

92

m

N=4

2021

Graham3

None

(none)

mp_lymphocytes mp_lymphocytes 113811 informational

CC RIX

92

m

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic lymphocytes that are CD3+ T cells (memory precursor panel) [%] mp_CD3_pos 113812

CC RIX

92

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD3+ T cells that are CD8+ (memory precursor panel) [%] mp_CD3_pos_CD8_pos 113813

CC RIX

92

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD8+ T cells that are CD44+ (memory precursor panel) [%] mp_CD8_pos_CD44_pos 113814

CC RIX

91

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD8+ T cells that are CD62L- (memory precursor panel) [%] mp_CD8_pos_CD62L_neg 113815

CC RIX

76

m

8-10wks

N=3

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD8+ T cells that are Ki67+ (memory precursor panel) [%] mp_CD8_pos_Ki67_pos 113816

CC RIX

92

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD3+ T cells that are CD4+ (memory precursor panel) [%] mp_CD3_pos_CD4_pos 113817

CC RIX

92

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD4+ T cells that are CD44+ (memory precursor panel) [%] mp_CD4_pos_CD44_pos 113818

CC RIX

91

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD4+ T cells that are CD62L- (memory precursor panel) [%] mp_CD4_pos_CD62L_neg 113819

CC RIX

73

m

8-10wks

N=3

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD4+ T cells that are Ki67+ (memory precursor panel) [%] mp_CD4_pos_Ki67_pos 113820

CC RIX

92

m

8-10wks

N=4

2021

Graham3

None

(none)

mem_time mem_time 113821 informational

CC RIX

73

m

N=3

2021

Graham3

None

(none)

mem_singlets mem_singlets 113822 informational

CC RIX

73

m

N=3

2021

Graham3

None

(none)

mem_live mem_live 113823 informational

CC RIX

73

m

N=3

2021

Graham3

None

(none)

mem_lymphocytes mem_lymphocytes 113824 informational

CC RIX

73

m

N=3

2021

Graham3

immune cell quantification

(none)

percentage of splenic lymphocytes that are CD3+ T cells (memory panel) [%] mem_CD3_pos 113825

CC RIX

68

m

8-10wks

N=3

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD3+ T cells that are CD8+ (memory panel) [%] mem_CD3_pos_CD8_pos 113826

CC RIX

68

m

8-10wks

N=3

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD8+ T cells that are CD44+ (memory panel) [%] mem_CD8_pos_CD44_pos 113827

CC RIX

73

m

8-10wks

N=3

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD8+ T cells that are CD62L- (memory panel) [%] mem_CD8_pos_CD62L_neg 113828

CC RIX

68

m

8-10wks

N=3

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD8+ T cells that are Ki67+ (memory panel) [%] mem_CD8_pos_Ki67_pos 113829

CC RIX

73

m

8-10wks

N=3

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD3+ T cells that are CD4+ (memory panel) [%] mem_CD3_pos_CD4_pos 113830

CC RIX

68

m

8-10wks

N=3

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD4+ T cells that are CD44+ (memory panel) [%] mem_CD4_pos_CD44_pos 113831

CC RIX

73

m

8-10wks

N=3

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD4+ T cells that are CD62L- (memory panel) [%] mem_CD4_pos_CD62L_neg 113832

CC RIX

68

m

8-10wks

N=3

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD4+ T cells that are Ki67+ (memory panel) [%] mem_CD4_pos_Ki67_pos 113833

CC RIX

73

m

8-10wks

N=3

2021

Graham3

None

(none)

ics_time ics_time 113834 informational

CC RIX

102

m

N=4

2021

Graham3

None

(none)

ics_singlets ics_singlets 113835 informational

CC RIX

102

m

N=4

2021

Graham3

None

(none)

ics_live ics_live 113836 informational

CC RIX

102

m

N=4

2021

Graham3

None

(none)

ics_lymphocytes ics_lymphocytes 113837 informational

CC RIX

102

m

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic lymphocytes that are CD3+ T cells following stimulation with anti-CD3 and anti CD28 [%] ics_CD3_pos 113838

CC RIX

102

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD3+ T cells that are CD8+ following stimulation with anti-CD3 and anti-CD28 [%] ics_CD3_pos_CD8_pos 113839

CC RIX

102

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD8+ T cells that are IL-17+ by intracellular cytokine staining following stimulation with anti-CD3 and anti-CD28 [%] ics_CD8_pos_IL17_pos 113840

CC RIX

102

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD8+ T cells that are IFNg+ by intracellular cytokine staining following stimulation with anti-CD3 and anti-CD28 [%] ics_CD8_pos_IGNg_pos 113841

CC RIX

102

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD3+ T cells that are CD4+ following stimulation with anti-CD3 and anti-CD28 [%] ics_CD3_pos_CD4_pos 113842

CC RIX

102

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD4+ T cells that are IL-17+ by intracellular cytokine staining following stimulation with anti-CD3 and anti-CD28 [%] ics_CD4_pos_IL17_pos 113843

CC RIX

102

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD4+ T cells that are IFNg+ by intracellular cytokine staining following stimulation with anti-CD3 and anti-CD28 [%] ics_CD4_pos_IFNg_pos 113844

CC RIX

102

m

8-10wks

N=4

2021

Graham3

immune cell quantification

(none)

percentage of splenic CD4+ T cells that are Tbet+ (transcription factor) by intracellular staining following stimulation with anti-CD3 and anti-CD28 [%] ics_CD4_pos_Tbet_pos 113845

CC RIX

92

m

8-10wks

N=4

2021

Noll1

None

influenza A (H1N1) virus

dam dam 112577 categorical informational d7 d10 d15 d29 d45

CC RIX

46

f

N=4

2020

Noll1

None

influenza A (H1N1) virus

sire sire 112582 categorical informational d7 d10 d15 d29 d45

CC RIX

46

f

N=4

2020

Noll1

None

influenza A (H1N1) virus

submitted_strain submitted_strain 112587 categorical informational d7 d10 d15 d29 d45

CC RIX

46

f

N=4

2020

Noll1

None

influenza A (H1N1) virus

submitted_id submitted_id 112592 informational d7 d10 d15 d29 d45

CC RIX

46

f

N=4

2020

Noll1

None

influenza A (H1N1) virus

antigen antigen 112597 categorical informational d7 d10 d15 d29 d45

CC RIX

46

f

N=4

2020

Noll1

immunoglobulin quantification

influenza A (H1N1) virus

immunoglobulin M (serum IgM) area under curve (AUC) post-infection [AUC] IgM 112602 post-infection: day 7 day 10 day 15 day 29 day 45

CC RIX

46

f

8-12 wks

N=4

2020

Noll1

immunoglobulin quantification

influenza A (H1N1) virus

immunoglobulin G1 (serum IgG1) area under curve (AUC) post-infection [AUC] IgG1 112607 post-infection: day 7 day 10 day 15 day 29 day 45

CC RIX

46

f

8-12 wks

N=4

2020

Noll1

immunoglobulin quantification

influenza A (H1N1) virus

immunoglobulin G2a plus G2c (serum IgG2a pooled with IgG2c) area under curve (AUC) post-infection [AUC] IgG2ac 112612 post-infection: day 7 day 10 day 15 day 29 day 45

CC RIX

46

f

8-12 wks

N=4

2020

Noll1

immunoglobulin quantification

influenza A (H1N1) virus

immunoglobulin G2b (serum IgG2b) area under curve (AUC) post-infection [AUC] IgG2b 112617 post-infection: day 7 day 10 day 15 day 29 day 45

CC RIX

46

f

8-12 wks

N=3

2020

Noll1

immunoglobulin quantification

influenza A (H1N1) virus

immunoglobulin G3 (serum IgG3) area under curve (AUC) post-infection [AUC] IgG3 112622 post-infection: day 7 day 10 day 15 day 29 day 45

CC RIX

46

f

8-12 wks

N=4

2020

Noll1

immunoglobulin quantification

influenza A (H1N1) virus

total immunoglobulin G (serum IgG) area under curve (AUC) post-infection [AUC] Total_IgG 112627 post-infection: day 7 day 10 day 15 day 29 day 45

CC RIX

44

f

8-12 wks

N=3

2020

Schoenrock1

body weight

various diets

body weight at weaning [g] bw_d21 61202 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

3wks

N=11

2018

Schoenrock1

body weight

various diets

body weight at start of testing [g] bw_d60 61206 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

body weight

various diets

body weight change (start of testing minus weaning) [g] bw_chg 61210 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

open field test

various diets

number of fecal boli, 10 min test [g] OF_boli 61214 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

open field test

various diets

total distance traveled, 10 min test [cm] OF_dist 61218 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=10

2018

Schoenrock1

open field test

various diets

number of vertical movements (rearing), 10 min test [n] OF_vert 61222 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=10

2018

Schoenrock1

open field test

various diets

percentage of time in center of arena, 10 min test [%] OF_center 61226 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=10

2018

Schoenrock1

light-dark box

various diets

number of fecal boli, 10 min test [n] LD_boli 61230 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

light-dark box

various diets

number of transitions between light and dark sides, 10 min test [n] LD_trans 61234 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

light-dark box

various diets

distance traveled in dark side, 10 min test [cm] LD_dist_dk 61238 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

light-dark box

various diets

distance traveled in light side, 10 min test [cm] LD_dist_lt 61242 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

light-dark box

various diets

total distance traveled (dark + light), 10 min test [cm] LD_dist_tot 61246 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

light-dark box

various diets

percentage of time in light side, 10 min test [%] LD_pct_lt 61250 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

body temperature

various diets

basal body temperature [°C] SIH_temp1 61254 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

body temperature

various diets

body temperature taken 10 min after stress of taking basal temperature [°C] SIH_temp2 61258 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

body temperature

various diets

change in temperature (stress minus basal) [°C] SIH_temp_chg 61262 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

forced swim test

various diets

number of fecal boli, 6 min test [n] FST_boli 61266 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

forced swim test

various diets

percentage of time spent immobile in the last 4 mins, 6 min test [%] FST_immobile 61270 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

hormone quantification

various diets

basal serum corticosterone [ng/mL] CORT_basal 61274 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

hormone quantification

various diets

serum corticosterone after 10 min restraint stress [ng/mL] CORT_stress 61278 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Schoenrock1

hormone quantification

various diets

change in serum corticosterone (stress minus basal) [ng/mL] CORT_chg 61282 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet

CC RIX

18

f

8-9wks

N=11

2018

Shorter5

body weight

(none)

body weight [g] bw 110118

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

organ weights

(none)

testis weight [g] testis 110143 left right

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

organ weights

(none)

testis weight mean [g] testis_mean 110121

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

organ weights

(none)

testis weight as percentage of body weight [%] testis_pct_bw 110122

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

organ weights

(none)

epididymis plus vas deferens weight [g] epidid_vd 110145 left right

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

organ weights

(none)

epididymis plus vas deferens weight mean [g] epidid_vd_mean 110125

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

organ weights

(none)

epididymis plus vas deferens weight as percentage of body weight [%] epidid_vd_pct_bw 110126

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

organ weights

(none)

seminal vesicles weight total [g] semin_vesi_tot 110127

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

organ weights

(none)

seminal vesicles weight as percentage of body weight [%] semin_vesi_pct_bw 110128

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

sperm count

(none)

sperm count per mouse (x 10⁶) [n] sperm_count 110129

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

sperm count

(none)

sperm count per mg testis weight (x 10³) [n/mg] sperm_adj 110130

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

microscopy

(none)

percentage of sperm that are motile [%] motile 110147 10 min 90 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

microscopy

(none)

percentage of motile sperm that are 'vigorous' [%] vigorous 110149 10 min 90 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

microscopy

(none)

percentage of motile sperm that are 'hyperactivated' [%] hyper 110151 10 min 90 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

microscopy

(none)

sperm mean curvilinear velocity [µm/s] VCL 110153 10 min 90 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

histopathology

(none)

percentage of sperm with normal morphology [%] normal_sperm 110139

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

histopathology

(none)

percentage of sperm with abnormal head shape [%] abnormal_head 110140

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

histopathology

(none)

percentage of sperm with abnormal tail bending [%] abnormal_tail 110141

CC RIX

28

m

7-44wks

N=4

2019

Shorter5

histopathology

(none)

percentage of sperm with broken tails [%] broken_tail 110142

CC RIX

28

m

7-44wks

N=4

2019

Shorter7

microscopy

(none)

percentage of sperm that are motile [%] sperm_motile 65701 10 min 30 min 60 min 90 min 120 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter7

microscopy

(none)

percentage of motile sperm that are 'vigorous' [%] sperm_vigor 65706 10 min 30 min 60 min 90 min 120 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter7

microscopy

(none)

percentage of motile sperm that are 'progressive' [%] sperm_prog 65711 10 min 30 min 60 min 90 min 120 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter7

microscopy

(none)

percentage of motile sperm that are 'hyperactivated' [%] sperm_hyper 65716 10 min 30 min 60 min 90 min 120 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter7

microscopy

(none)

percentage of motile sperm that are 'intermediate' [%] sperm_int 65721 10 min 30 min 60 min 90 min 120 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter7

microscopy

(none)

percentage of motile sperm that are 'slow' [%] sperm_slow 65726 10 min 30 min 60 min 90 min 120 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter7

microscopy

(none)

percentage of motile sperm that are 'weak' [%] sperm_weak 65731 10 min 30 min 60 min 90 min 120 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter7

microscopy

(none)

sperm mean path velocity [µm/s] sperm_VAP 65736 10 min 30 min 60 min 90 min 120 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter7

microscopy

(none)

sperm mean straight line velocity [µm/s] sperm_VSL 65741 10 min 30 min 60 min 90 min 120 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter7

microscopy

(none)

sperm mean curvilinear velocity [µm/s] sperm_VCL 65746 10 min 30 min 60 min 90 min 120 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter7

microscopy

(none)

sperm mean lateral head displacement (amplitude) [µm] sperm_ALH 65751 10 min 30 min 60 min 90 min 120 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter7

microscopy

(none)

sperm mean cross beat frequency [Hz] sperm_BCF 65756 10 min 30 min 60 min 90 min 120 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter7

microscopy

(none)

sperm mean straightness [ratio] sperm_STR 65761 10 min 30 min 60 min 90 min 120 min

CC RIX

28

m

7-44wks

N=4

2019

Shorter7

microscopy

(none)

sperm mean linearity [ratio] sperm_LIN 65766 10 min 30 min 60 min 90 min 120 min

CC RIX

28

m

7-44wks

N=4

2019

Xenakis1

None

(none)

batch [] batch 111144 informational

CC RIX

73

both

N=6

2020

Xenakis1

None

(none)

cage cage 111145 categorical informational

CC RIX

73

both

N=6

2020

Xenakis1

None

(none)

dam dam 111146 categorical informational

CC RIX

73

both

N=6

2020

Xenakis1

None

(none)

sire sire 111147 categorical informational

CC RIX

73

both

N=6

2020

Xenakis1

None

(none)

strain_long_name strain_long_name 111148 categorical informational

CC RIX

73

both

N=6

2020

Xenakis1

None

(none)

treatment treatment 111149 categorical informational

CC RIX

73

both

N=6

2020

Xenakis1

body weight

(none)

body weight, placebo group [g] bw_cont 111150 pre-treatment post-treatment

CC RIX

73

both

7-13wks

N=3

2020

Xenakis1

body weight

haloperidol

body weight, treatment group [g] bw_Rx 111152 pre-treatment post-treatment

CC RIX

73

both

7-13wks

N=3

2020

Xenakis1

inclined screen test

(none)

latency to move all four paws (extrapyramidal symptoms), placebo group [s] latency_cont 111154 pre-treatment post-treatment

CC RIX

73

both

7-9wks

N=3

2020

Xenakis1

inclined screen test

haloperidol

latency to move all four paws (extrapyramidal symptoms), treatment group [s] latency_Rx 111156 pre-treatment post-treatment

CC RIX

73

both

7-9wks

N=3

2020

Xenakis1

open field test

(none)

distance traveled, 30 min test, placebo group [cm] distance_cont 111158 pre-treatment post-treatment

CC RIX

73

both

7-13wks

N=3

2020

Xenakis1

open field test

haloperidol

distance traveled, 30 min test, treatment group [cm] distance_Rx 111160 pre-treatment post-treatment

CC RIX

73

both

7-13wks

N=3

2020

Xenakis1

open field test

(none)

vertical activity (beam breaks), 30 min test, placebo group [n] vertical_cont 111162 pre-treatment post-treatment

CC RIX

73

both

7-13wks

N=3

2020

Xenakis1

open field test

haloperidol

vertical activity (beam breaks), 30 min test, treatment group [n] vertical_Rx 111164 pre-treatment post-treatment

CC RIX

73

both

7-13wks

N=3

2020

Xenakis1

open field test

(none)

time spent in center of arena, 30 min test, placebo group [s] center_cont 111166 pre-treatment post-treatment

CC RIX

73

both

7-13wks

N=3

2020

Xenakis1

open field test

haloperidol

time spent in center of arena, 30 min test, treatment group [s] center_Rx 111168 pre-treatment post-treatment

CC RIX

73

both

7-13wks

N=3

2020

Xenakis1

open field test

(none)

stereotypy activity (beam breaks), 30 min test, placebo group [n] stereotypy_cont 111170 pre-treatment post-treatment

CC RIX

73

both

7-13wks

N=3

2020

Xenakis1

open field test

haloperidol

stereotypy activity (beam breaks), 30 min test, treatment group [n] stereotypy_Rx 111172 pre-treatment post-treatment

CC RIX

73

both

7-13wks

N=3

2020

Xenakis1

behavior observation

haloperidol

subtle vacuous chewing movements, 15 min test, treatment group, post-treatment [n] subtle_vcm_Rx_post 111174

CC RIX

73

both

11-13wks

N=5

2020

Xenakis1

behavior observation

haloperidol

overt vacuous chewing movements, 15 min test, treatment group, post-treatment [n] overt_vcm_Rx_post 111175

CC RIX

73

both

11-13wks

N=5

2020

Xenakis1

behavior observation

haloperidol

tongue protrusions, 15 min test, treatment group, post-treatment [n] tongue_Rx_post 111176

CC RIX

73

both

11-13wks

N=5

2020

Xenakis1

behavior observation

haloperidol

jaw tremors, 15 min test, treatment group, post-treatment [n] jawtremor_Rx_post 111177

CC RIX

73

both

11-13wks

N=5

2020

Xenakis1

behavior observation

(none)

length of video analysis for vacuous chewing movements, treatment group, post-treatment analyzed_duration_Rx_post 111178 informational

CC RIX

73

both

N=5

2020

Xenakis1

drug and metabolite quantification

haloperidol

plasma haloperidol concentration, treatment group, post-treatment [ng/dL] haloperidol_conc_post 111179

CC RIX

53

both

11-13wks

N=2

2020

Filter Table Results