Project measure / variable:   Graham3   ics_CD3_pos

ID, description, units MPD:113838   ics_CD3_pos   percentage of splenic lymphocytes that are CD3+ T cells following stimulation with anti-CD3 and anti CD28   [%]  
Data set, strains Graham3   CC RIX   102 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Graham3 - percentage of splenic lymphocytes that are CD3+ T cells following stimulation with anti-CD3 and anti CD28



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested102 strains
Mean of the strain means22.811   %
Median of the strain means21.891   %
SD of the strain means± 10.714
Coefficient of variation (CV)0.4697
Min–max range of strain means2.3333   –   47.3   %
Mean sample size per strain4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 101 51209.4501 507.0243 9.4782 < 0.0001
Residuals 358 19150.6848 53.4935


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(001 x 055) m 43.967 3.0846   6 1.2593 0.0702 40.3, 49.0 1.97
RIX:CC(001 x 074) m 42.0 5.7611   3 3.3262 0.1372 35.7, 47.0 1.79
RIX:CC(002 x 011) m 12.8 2.2594   5 1.0104 0.1765 10.4, 15.7 -0.93
RIX:CC(002 x 021) m 26.1 8.4914   6 3.4666 0.3253 16.3, 38.4 0.31
RIX:CC(003 x 051) m 47.3 13.565   6 5.5377 0.2868 29.9, 68.4 2.29
RIX:CC(003 x 062) m 29.05 11.185   6 4.5665 0.385 10.1, 44.4 0.58
RIX:CC(004 x 011) m 21.515 11.875   6 4.8481 0.552 8.02, 34.7 -0.12
RIX:CC(004 x 012) m 34.767 7.2989   6 2.9798 0.2099 25.3, 42.9 1.12
RIX:CC(005 x 001) m 39.05 2.7754   6 1.1331 0.0711 36.3, 43.5 1.52
RIX:CC(005 x 038) m 25.233 2.2942   3 1.3246 0.0909 22.6, 26.8 0.23
RIX:CC(005 x 040) m 14.76 5.4598   6 2.229 0.3699 7.06, 22.4 -0.75
RIX:CC(006 x 007) m 34.433 6.8102   6 2.7802 0.1978 28.1, 45.7 1.08
RIX:CC(006 x 039) m 2.3333 0.40501   3 0.23383 0.1736 1.99, 2.78 -1.91
RIX:CC(007 x 070) m 24.233 5.658   3 3.2667 0.2335 17.7, 27.5 0.13
RIX:CC(008 x 009) m 9.8567 1.3596   3 0.78499 0.1379 8.6, 11.3 -1.21
RIX:CC(008 x 010) m 6.9333 4.3817   3 2.5298 0.632 2.23, 10.9 -1.48
RIX:CC(008 x 018) m 17.367 0.85049   3 0.49103 0.049 16.4, 18.0 -0.51
RIX:CC(009 x 040) m 13.332 9.9078   6 4.0448 0.7432 4.6, 25.4 -0.88
RIX:CC(010 x 015) m 37.467 3.1747   6 1.2961 0.0847 33.3, 42.2 1.37
RIX:CC(010 x 060) m 23.467 5.9518   3 3.4362 0.2536 17.6, 29.5 0.06
RIX:CC(011 x 032) m 13.133 0.45092   3 0.26034 0.0343 12.7, 13.6 -0.9
RIX:CC(011 x 042) m 22.417 3.3991   6 1.3877 0.1516 18.9, 26.5 -0.04
RIX:CC(012 x 032) m 41.467 19.676   6 8.0328 0.4745 23.8, 73.3 1.74
RIX:CC(012 x 038) m 27.933 2.94   3 1.6974 0.1052 25.5, 31.2 0.48
RIX:CC(013 x 041) m 17.323 5.387   9 1.7957 0.311 9.41, 23.9 -0.51
RIX:CC(014 x 059) m 40.383 9.7526   6 3.9815 0.2415 30.8, 55.3 1.64
RIX:CC(015 x 018) m 37.55 20.186   6 8.2408 0.5376 17.7, 69.3 1.38
RIX:CC(015 x 059) m 21.367 4.2063   3 2.4285 0.1969 17.3, 25.7 -0.13
RIX:CC(016 x 038) m 34.95 8.3519   6 3.4097 0.239 23.3, 48.0 1.13
RIX:CC(017 x 004) m 36.25 3.288   6 1.3423 0.0907 31.4, 39.9 1.25
RIX:CC(017 x 041) m 23.8 2.7684   6 1.1302 0.1163 20.7, 28.5 0.09
RIX:CC(018 x 009) m 19.1 8.5715   3 4.9487 0.4488 10.2, 27.3 -0.35
RIX:CC(018 x 065) m 18.843 7.9582   3 4.5947 0.4223 9.83, 24.9 -0.37
RIX:CC(019 x 002) m 30.173 4.9978   11 1.5069 0.1656 23.0, 39.6 0.69
RIX:CC(019 x 004) m 17.677 11.589   6 4.7314 0.6556 7.07, 33.3 -0.48
RIX:CC(019 x 027) m 27.5 5.9775   3 3.4511 0.2174 20.6, 31.1 0.44
RIX:CC(021 x 023) m 30.2 1.8358   3 1.0599 0.0608 28.1, 31.5 0.69
RIX:CC(022 x 024) m 15.433 6.0335   3 3.4835 0.3909 11.9, 22.4 -0.69
RIX:CC(022 x 044) m 10.413 1.1935   3 0.68909 0.1146 9.04, 11.2 -1.16
RIX:CC(023 x 025) m 26.295 13.489   6 5.5069 0.513 8.87, 46.6 0.33
RIX:CC(024 x 023) m 26.317 5.795   6 2.3658 0.2202 15.7, 31.4 0.33
RIX:CC(024 x 052) m 27.2 2.8583   3 1.6503 0.1051 25.5, 30.5 0.41
RIX:CC(025 x 028) m 10.498 1.418   6 0.57889 0.1351 8.42, 12.3 -1.15
RIX:CC(026 x 034) m 21.1 5.1873   6 2.1177 0.2458 14.2, 30.1 -0.16
RIX:CC(027 x 036) m 10.933 0.85049   3 0.49103 0.0778 10.3, 11.9 -1.11
RIX:CC(027 x 045) m 6.4 0.95095   3 0.54903 0.1486 5.74, 7.49 -1.53
RIX:CC(029 x 027) m 7.7017 3.9765   6 1.6234 0.5163 2.93, 13.2 -1.41
RIX:CC(029 x 071) m 16.967 2.2143   3 1.2785 0.1305 15.4, 19.5 -0.55
RIX:CC(030 x 023) m 3.25 0.92677   3 0.53507 0.2852 2.42, 4.25 -1.83
RIX:CC(030 x 061) m 17.883 5.9908   6 2.4457 0.335 10.8, 24.8 -0.46
RIX:CC(032 x 013) m 16.733 4.0258   6 1.6435 0.2406 11.9, 21.6 -0.57
RIX:CC(032 x 017) m 23.533 5.181   6 2.1151 0.2202 16.7, 30.8 0.07
RIX:CC(033 x 046) m 8.9986 9.3131   6 3.802 1.0349 0.0405, 20.8 -1.29
RIX:CC(035 x 020) m 16.8 2.4515   3 1.4154 0.1459 14.4, 19.3 -0.56
RIX:CC(035 x 071) m 16.467 2.635   3 1.5213 0.16 14.3, 19.4 -0.59
RIX:CC(036 x 051) m 45.433 4.6737   3 2.6984 0.1029 41.5, 50.6 2.11
RIX:CC(037 x 046) m 31.633 1.464   3 0.84525 0.0463 30.3, 33.2 0.82
RIX:CC(037 x 057) m 14.6 1.2116   6 0.49464 0.083 13.2, 16.1 -0.77
RIX:CC(038 x 013) m 35.8 6.5397   6 2.6698 0.1827 28.7, 47.1 1.21
RIX:CC(039 x 020) m 36.833 8.6118   3 4.972 0.2338 29.7, 46.4 1.31
RIX:CC(040 x 003) m 33.333 2.3922   6 0.97662 0.0718 31.2, 37.2 0.98
RIX:CC(040 x 015) m 29.1 0.26458   3 0.15275 0.0091 28.8, 29.3 0.59
RIX:CC(041 x 012) m 29.733 8.9583   6 3.6572 0.3013 18.1, 40.5 0.65
RIX:CC(041 x 016) m 26.583 2.6626   6 1.087 0.1002 24.2, 30.2 0.35
RIX:CC(042 x 017) m 7.37 0.46936   3 0.27099 0.0637 7.06, 7.91 -1.44
RIX:CC(042 x 019) m 40.317 11.573   6 4.7246 0.2871 17.2, 48.3 1.63
RIX:CC(043 x 033) m 17.637 9.2064   3 5.3153 0.522 7.01, 23.2 -0.48
RIX:CC(043 x 037) m 28.167 4.6142   6 1.8837 0.1638 21.0, 34.1 0.5
RIX:CC(044 x 060) m 26.233 3.1005   3 1.7901 0.1182 22.7, 28.5 0.32
RIX:CC(045 x 044) m 16.823 7.1469   6 2.9177 0.4248 7.84, 23.4 -0.56
RIX:CC(046 x 068) m 17.033 4.9273   6 2.0116 0.2893 11.8, 22.3 -0.54
RIX:CC(049 x 036) m 39.867 0.75719   3 0.43716 0.019 39.0, 40.4 1.59
RIX:CC(051 x 005) m 43.7 7.5189   7 2.8419 0.1721 30.7, 54.6 1.95
RIX:CC(051 x 009) m 27.95 3.6198   6 1.4778 0.1295 24.2, 32.5 0.48
RIX:CC(052 x 007) m 21.333 2.8042   3 1.619 0.1314 18.1, 23.1 -0.14
RIX:CC(052 x 014) m 34.2 16.594   5 7.4211 0.4852 14.6, 48.7 1.06
RIX:CC(055 x 006) m 36.333 1.9218   3 1.1096 0.0529 34.6, 38.4 1.26
RIX:CC(055 x 028) m 14.667 1.5373   3 0.88757 0.1048 12.9, 15.7 -0.76
RIX:CC(056 x 033) m 22.933 7.4527   3 4.3028 0.325 16.5, 31.1 0.01
RIX:CC(057 x 052) m 19.99 12.504   6 5.1048 0.6255 8.66, 36.7 -0.26
RIX:CC(058 x 022) m 9.9067 2.757   3 1.5918 0.2783 7.31, 12.8 -1.2
RIX:CC(059 x 065) m 20.693 9.5805   6 3.9112 0.463 9.06, 31.0 -0.2
RIX:CC(060 x 006) m 27.217 4.074   6 1.6632 0.1497 21.0, 32.3 0.41
RIX:CC(060 x 037) m 26.4 1.4526   3 0.83865 0.055 24.9, 27.8 0.33
RIX:CC(061 x 025) m 14.933 0.66583   3 0.38442 0.0446 14.5, 15.7 -0.74
RIX:CC(061 x 026) m 20.983 3.1435   6 1.2833 0.1498 15.9, 24.9 -0.17
RIX:CC(061 x 039) m 26.683 5.3823   6 2.1973 0.2017 21.2, 34.4 0.36
RIX:CC(062 x 046) m 27.1 0.52915   3 0.30551 0.0195 26.7, 27.7 0.4
RIX:CC(062 x 072) m 11.927 4.8077   3 2.7757 0.4031 6.38, 14.9 -1.02
RIX:CC(063 x 001) m 15.9 2.7713   3 1.6 0.1743 14.3, 19.1 -0.65
RIX:CC(063 x 002) m 8.5867 2.6465   3 1.5279 0.3082 6.64, 11.6 -1.33
RIX:CC(065 x 010) m 22.267 8.5703   6 3.4988 0.3849 14.3, 33.9 -0.05
RIX:CC(065 x 072) m 4.1033 1.8061   3 1.0428 0.4402 2.5, 6.06 -1.75
RIX:CC(068 x 035) m 11.103 4.7832   3 2.7616 0.4308 6.01, 15.5 -1.09
RIX:CC(068 x 043) m 12.133 1.5503   3 0.89505 0.1278 10.6, 13.7 -1.0
RIX:CC(070 x 003) m 26.3 7.4505   3 4.3016 0.2833 18.4, 33.2 0.33
RIX:CC(072 x 063) m 3.3967 0.50023   3 0.28881 0.1473 2.86, 3.85 -1.81
RIX:CC(072 x 075) m 19.5 0.3   3 0.17321 0.0154 19.2, 19.8 -0.31
RIX:CC(074 x 058) m 12.173 4.0411   3 2.3331 0.332 7.52, 14.8 -0.99
RIX:CC(074 x 062) m 20.433 1.9035   3 1.099 0.0932 18.6, 22.4 -0.22
RIX:CC(075 x 021) m 23.167 2.6577   3 1.5344 0.1147 20.1, 24.8 0.03
RIX:CC(075 x 035) m 15.303 8.505   3 4.9104 0.5558 9.81, 25.1 -0.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(001 x 055) m 43.9666666667 2.9858983244 49.8387716915 38.0945616418
RIX:CC(001 x 074) m 42.0 4.2226979063 50.3044105658 33.6955894342
RIX:CC(002 x 011) m 12.8 3.2708877334 19.2325687643 6.3674312357
RIX:CC(002 x 021) m 26.1 2.9858983244 31.9721050248 20.2278949752
RIX:CC(003 x 051) m 47.3 2.9858983244 53.1721050248 41.4278949752
RIX:CC(003 x 062) m 29.05 2.9858983244 34.9221050248 23.1778949752
RIX:CC(004 x 011) m 21.515 2.9858983244 27.3871050248 15.6428949752
RIX:CC(004 x 012) m 34.7666666667 2.9858983244 40.6387716915 28.8945616418
RIX:CC(005 x 001) m 39.05 2.9858983244 44.9221050248 33.1778949752
RIX:CC(005 x 038) m 25.2333333333 4.2226979063 33.5377438991 16.9289227675
RIX:CC(005 x 040) m 14.76 2.9858983244 20.6321050248 8.8878949752
RIX:CC(006 x 007) m 34.4333333333 2.9858983244 40.3054383582 28.5612283085
RIX:CC(006 x 039) m 2.3333333333 4.2226979063 10.6377438991 -5.9710772325
RIX:CC(007 x 070) m 24.2333333333 4.2226979063 32.5377438991 15.9289227675
RIX:CC(008 x 009) m 9.8566666667 4.2226979063 18.1610772325 1.5522561009
RIX:CC(008 x 010) m 6.9333333333 4.2226979063 15.2377438991 -1.3710772325
RIX:CC(008 x 018) m 17.3666666667 4.2226979063 25.6710772325 9.0622561009
RIX:CC(009 x 040) m 13.3316666667 2.9858983244 19.2037716915 7.4595616418
RIX:CC(010 x 015) m 37.4666666667 2.9858983244 43.3387716915 31.5945616418
RIX:CC(010 x 060) m 23.4666666667 4.2226979063 31.7710772325 15.1622561009
RIX:CC(011 x 032) m 13.1333333333 4.2226979063 21.4377438991 4.8289227675
RIX:CC(011 x 042) m 22.4166666667 2.9858983244 28.2887716915 16.5445616418
RIX:CC(012 x 032) m 41.4666666667 2.9858983244 47.3387716915 35.5945616418
RIX:CC(012 x 038) m 27.9333333333 4.2226979063 36.2377438991 19.6289227675
RIX:CC(013 x 041) m 17.3233333333 2.4379757729 22.117887009 12.5287796577
RIX:CC(014 x 059) m 40.3833333333 2.9858983244 46.2554383582 34.5112283085
RIX:CC(015 x 018) m 37.55 2.9858983244 43.4221050248 31.6778949752
RIX:CC(015 x 059) m 21.3666666667 4.2226979063 29.6710772325 13.0622561009
RIX:CC(016 x 038) m 34.95 2.9858983244 40.8221050248 29.0778949752
RIX:CC(017 x 004) m 36.25 2.9858983244 42.1221050248 30.3778949752
RIX:CC(017 x 041) m 23.8 2.9858983244 29.6721050248 17.9278949752
RIX:CC(018 x 009) m 19.1 4.2226979063 27.4044105658 10.7955894342
RIX:CC(018 x 065) m 18.8433333333 4.2226979063 27.1477438991 10.5389227675
RIX:CC(019 x 002) m 30.1727272727 2.20523206 34.5095642489 25.8358902966
RIX:CC(019 x 004) m 17.6766666667 2.9858983244 23.5487716915 11.8045616418
RIX:CC(019 x 027) m 27.5 4.2226979063 35.8044105658 19.1955894342
RIX:CC(021 x 023) m 30.2 4.2226979063 38.5044105658 21.8955894342
RIX:CC(022 x 024) m 15.4333333333 4.2226979063 23.7377438991 7.1289227675
RIX:CC(022 x 044) m 10.4133333333 4.2226979063 18.7177438991 2.1089227675
RIX:CC(023 x 025) m 26.295 2.9858983244 32.1671050248 20.4228949752
RIX:CC(024 x 023) m 26.3166666667 2.9858983244 32.1887716915 20.4445616418
RIX:CC(024 x 052) m 27.2 4.2226979063 35.5044105658 18.8955894342
RIX:CC(025 x 028) m 10.4983333333 2.9858983244 16.3704383582 4.6262283085
RIX:CC(026 x 034) m 21.1 2.9858983244 26.9721050248 15.2278949752
RIX:CC(027 x 036) m 10.9333333333 4.2226979063 19.2377438991 2.6289227675
RIX:CC(027 x 045) m 6.4 4.2226979063 14.7044105658 -1.9044105658
RIX:CC(029 x 027) m 7.7016666667 2.9858983244 13.5737716915 1.8295616418
RIX:CC(029 x 071) m 16.9666666667 4.2226979063 25.2710772325 8.6622561009
RIX:CC(030 x 023) m 3.25 4.2226979063 11.5544105658 -5.0544105658
RIX:CC(030 x 061) m 17.8833333333 2.9858983244 23.7554383582 12.0112283085
RIX:CC(032 x 013) m 16.7333333333 2.9858983244 22.6054383582 10.8612283085
RIX:CC(032 x 017) m 23.5333333333 2.9858983244 29.4054383582 17.6612283085
RIX:CC(033 x 046) m 8.9985833333 2.9858983244 14.8706883582 3.1264783085
RIX:CC(035 x 020) m 16.8 4.2226979063 25.1044105658 8.4955894342
RIX:CC(035 x 071) m 16.4666666667 4.2226979063 24.7710772325 8.1622561009
RIX:CC(036 x 051) m 45.4333333333 4.2226979063 53.7377438991 37.1289227675
RIX:CC(037 x 046) m 31.6333333333 4.2226979063 39.9377438991 23.3289227675
RIX:CC(037 x 057) m 14.6 2.9858983244 20.4721050248 8.7278949752
RIX:CC(038 x 013) m 35.8 2.9858983244 41.6721050248 29.9278949752
RIX:CC(039 x 020) m 36.8333333333 4.2226979063 45.1377438991 28.5289227675
RIX:CC(040 x 003) m 33.3333333333 2.9858983244 39.2054383582 27.4612283085
RIX:CC(040 x 015) m 29.1 4.2226979063 37.4044105658 20.7955894342
RIX:CC(041 x 012) m 29.7333333333 2.9858983244 35.6054383582 23.8612283085
RIX:CC(041 x 016) m 26.5833333333 2.9858983244 32.4554383582 20.7112283085
RIX:CC(042 x 017) m 7.37 4.2226979063 15.6744105658 -0.9344105658
RIX:CC(042 x 019) m 40.3166666667 2.9858983244 46.1887716915 34.4445616418
RIX:CC(043 x 033) m 17.6366666667 4.2226979063 25.9410772325 9.3322561009
RIX:CC(043 x 037) m 28.1666666667 2.9858983244 34.0387716915 22.2945616418
RIX:CC(044 x 060) m 26.2333333333 4.2226979063 34.5377438991 17.9289227675
RIX:CC(045 x 044) m 16.8233333333 2.9858983244 22.6954383582 10.9512283085
RIX:CC(046 x 068) m 17.0333333333 2.9858983244 22.9054383582 11.1612283085
RIX:CC(049 x 036) m 39.8666666667 4.2226979063 48.1710772325 31.5622561009
RIX:CC(051 x 005) m 43.7 2.7644046846 49.13651286 38.26348714
RIX:CC(051 x 009) m 27.95 2.9858983244 33.8221050248 22.0778949752
RIX:CC(052 x 007) m 21.3333333333 4.2226979063 29.6377438991 13.0289227675
RIX:CC(052 x 014) m 34.2 3.2708877334 40.6325687643 27.7674312357
RIX:CC(055 x 006) m 36.3333333333 4.2226979063 44.6377438991 28.0289227675
RIX:CC(055 x 028) m 14.6666666667 4.2226979063 22.9710772325 6.3622561009
RIX:CC(056 x 033) m 22.9333333333 4.2226979063 31.2377438991 14.6289227675
RIX:CC(057 x 052) m 19.99 2.9858983244 25.8621050248 14.1178949752
RIX:CC(058 x 022) m 9.9066666667 4.2226979063 18.2110772325 1.6022561009
RIX:CC(059 x 065) m 20.6933333333 2.9858983244 26.5654383582 14.8212283085
RIX:CC(060 x 006) m 27.2166666667 2.9858983244 33.0887716915 21.3445616418
RIX:CC(060 x 037) m 26.4 4.2226979063 34.7044105658 18.0955894342
RIX:CC(061 x 025) m 14.9333333333 4.2226979063 23.2377438991 6.6289227675
RIX:CC(061 x 026) m 20.9833333333 2.9858983244 26.8554383582 15.1112283085
RIX:CC(061 x 039) m 26.6833333333 2.9858983244 32.5554383582 20.8112283085
RIX:CC(062 x 046) m 27.1 4.2226979063 35.4044105658 18.7955894342
RIX:CC(062 x 072) m 11.9266666667 4.2226979063 20.2310772325 3.6222561009
RIX:CC(063 x 001) m 15.9 4.2226979063 24.2044105658 7.5955894342
RIX:CC(063 x 002) m 8.5866666667 4.2226979063 16.8910772325 0.2822561009
RIX:CC(065 x 010) m 22.2666666667 2.9858983244 28.1387716915 16.3945616418
RIX:CC(065 x 072) m 4.1033333333 4.2226979063 12.4077438991 -4.2010772325
RIX:CC(068 x 035) m 11.1033333333 4.2226979063 19.4077438991 2.7989227675
RIX:CC(068 x 043) m 12.1333333333 4.2226979063 20.4377438991 3.8289227675
RIX:CC(070 x 003) m 26.3 4.2226979063 34.6044105658 17.9955894342
RIX:CC(072 x 063) m 3.3966666667 4.2226979063 11.7010772325 -4.9077438991
RIX:CC(072 x 075) m 19.5 4.2226979063 27.8044105658 11.1955894342
RIX:CC(074 x 058) m 12.1733333333 4.2226979063 20.4777438991 3.8689227675
RIX:CC(074 x 062) m 20.4333333333 4.2226979063 28.7377438991 12.1289227675
RIX:CC(075 x 021) m 23.1666666667 4.2226979063 31.4710772325 14.8622561009
RIX:CC(075 x 035) m 15.3033333333 4.2226979063 23.6077438991 6.9989227675




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA