Project measure / variable:   Graham3   ics_CD3_pos_CD4_pos

ID, description, units MPD:113842   ics_CD3_pos_CD4_pos   percentage of splenic CD3+ T cells that are CD4+ following stimulation with anti-CD3 and anti-CD28   [%]  
Data set, strains Graham3   CC RIX   102 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Graham3 - percentage of splenic CD3+ T cells that are CD4+ following stimulation with anti-CD3 and anti-CD28



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested102 strains
Mean of the strain means54.42   %
Median of the strain means55.73   %
SD of the strain means± 9.6229
Coefficient of variation (CV)0.1768
Min–max range of strain means28.473   –   74.0   %
Mean sample size per strain4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 101 44120.8544 436.8401 6.9724 < 0.0001
Residuals 358 22429.8384 62.6532


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(001 x 055) m 53.67 4.7471   6 1.938 0.0885 47.4, 59.5 -0.08
RIX:CC(001 x 074) m 57.67 6.133   3 3.5409 0.1064 52.4, 64.4 0.34
RIX:CC(002 x 011) m 45.62 14.428   5 6.4522 0.3163 29.9, 59.8 -0.91
RIX:CC(002 x 021) m 59.1 6.3331   6 2.5855 0.1072 53.2, 67.0 0.49
RIX:CC(003 x 051) m 44.6 12.91   6 5.2706 0.2895 26.0, 55.6 -1.02
RIX:CC(003 x 062) m 64.55 2.9071   6 1.1868 0.045 59.1, 66.8 1.05
RIX:CC(004 x 011) m 58.75 10.196   6 4.1626 0.1736 43.2, 66.6 0.45
RIX:CC(004 x 012) m 52.3 5.0517   6 2.0624 0.0966 45.7, 60.3 -0.22
RIX:CC(005 x 001) m 52.73 2.6128   6 1.0667 0.0495 49.5, 55.8 -0.18
RIX:CC(005 x 038) m 66.93 3.5642   3 2.0578 0.0532 63.2, 70.3 1.3
RIX:CC(005 x 040) m 56.78 7.3355   6 2.9947 0.1292 49.6, 66.6 0.25
RIX:CC(006 x 007) m 56.7 7.3506   6 3.0009 0.1296 45.6, 66.2 0.24
RIX:CC(006 x 039) m 54.6 3.8301   3 2.2113 0.0701 50.4, 57.9 0.02
RIX:CC(007 x 070) m 59.23 6.9097   3 3.9893 0.1167 51.5, 64.8 0.5
RIX:CC(008 x 009) m 51.43 0.66583   3 0.38442 0.0129 51.0, 52.2 -0.31
RIX:CC(008 x 010) m 33.367 4.0278   3 2.3255 0.1207 30.2, 37.9 -2.19
RIX:CC(008 x 018) m 58.1 2.8213   3 1.6289 0.0486 55.1, 60.7 0.38
RIX:CC(009 x 040) m 63.68 5.7496   6 2.3473 0.0903 53.6, 70.2 0.96
RIX:CC(010 x 015) m 63.4 2.3571   6 0.96229 0.0372 60.2, 66.0 0.93
RIX:CC(010 x 060) m 46.7 4.293   3 2.4786 0.0919 42.1, 50.6 -0.8
RIX:CC(011 x 032) m 60.6 0.36056   3 0.20817 0.0059 60.3, 61.0 0.64
RIX:CC(011 x 042) m 58.23 4.9094   6 2.0043 0.0843 48.9, 62.7 0.4
RIX:CC(012 x 032) m 61.83 4.6676   6 1.9055 0.0755 54.1, 65.9 0.77
RIX:CC(012 x 038) m 64.33 3.3561   3 1.9376 0.0522 61.1, 67.8 1.03
RIX:CC(013 x 041) m 55.32 2.0111   9 0.67036 0.0364 52.6, 59.4 0.09
RIX:CC(014 x 059) m 42.533 5.0753   6 2.072 0.1193 37.0, 49.3 -1.24
RIX:CC(015 x 018) m 28.473 17.191   6 7.018 0.6037 6.54, 45.7 -2.7
RIX:CC(015 x 059) m 60.47 2.0526   3 1.1851 0.0339 58.2, 62.2 0.63
RIX:CC(016 x 038) m 52.68 3.8509   6 1.5721 0.0731 45.4, 56.1 -0.18
RIX:CC(017 x 004) m 61.77 1.6415   6 0.67016 0.0266 60.1, 64.2 0.76
RIX:CC(017 x 041) m 60.23 3.6258   6 1.4802 0.0602 55.0, 65.7 0.6
RIX:CC(018 x 009) m 54.9 5.1098   3 2.9501 0.0931 50.3, 60.4 0.05
RIX:CC(018 x 065) m 50.67 7.2858   3 4.2065 0.1438 42.5, 56.5 -0.39
RIX:CC(019 x 002) m 64.45 6.4309   11 1.939 0.0998 51.9, 72.3 1.04
RIX:CC(019 x 004) m 61.65 7.4102   6 3.0252 0.1202 48.1, 68.7 0.75
RIX:CC(019 x 027) m 48.867 1.9655   3 1.1348 0.0402 46.6, 50.1 -0.58
RIX:CC(021 x 023) m 55.3 1.3892   3 0.80208 0.0251 54.4, 56.9 0.09
RIX:CC(022 x 024) m 53.0 2.0298   3 1.1719 0.0383 50.8, 54.8 -0.15
RIX:CC(022 x 044) m 62.87 6.1744   3 3.5648 0.0982 56.4, 68.7 0.88
RIX:CC(023 x 025) m 51.42 9.6572   6 3.9425 0.1878 36.0, 62.2 -0.31
RIX:CC(024 x 023) m 52.25 1.7897   6 0.73064 0.0343 48.9, 53.8 -0.23
RIX:CC(024 x 052) m 50.9 3.4511   3 1.9925 0.0678 47.5, 54.4 -0.37
RIX:CC(025 x 028) m 39.15 4.2444   6 1.7328 0.1084 35.3, 45.5 -1.59
RIX:CC(026 x 034) m 53.42 1.9944   6 0.81421 0.0373 50.5, 56.4 -0.1
RIX:CC(027 x 036) m 40.667 0.50332   3 0.29059 0.0124 40.2, 41.2 -1.43
RIX:CC(027 x 045) m 56.13 0.92376   3 0.53333 0.0165 55.6, 57.2 0.18
RIX:CC(029 x 027) m 37.917 4.4405   6 1.8128 0.1171 29.3, 41.5 -1.72
RIX:CC(029 x 071) m 48.333 6.4609   3 3.7302 0.1337 40.9, 52.6 -0.63
RIX:CC(030 x 023) m 68.03 7.6866   3 4.4378 0.113 59.2, 73.2 1.41
RIX:CC(030 x 061) m 46.117 17.904   6 7.3093 0.3882 23.9, 64.4 -0.86
RIX:CC(032 x 013) m 62.77 3.656   6 1.4926 0.0582 58.8, 68.1 0.87
RIX:CC(032 x 017) m 69.92 2.7448   6 1.1205 0.0393 65.5, 73.4 1.61
RIX:CC(033 x 046) m 42.083 33.411   6 13.64 0.7939 -1.28
RIX:CC(035 x 020) m 68.2 2.5865   3 1.4933 0.0379 65.4, 70.5 1.43
RIX:CC(035 x 071) m 44.633 4.1525   3 2.3975 0.093 40.4, 48.7 -1.02
RIX:CC(036 x 051) m 44.8 4.993   3 2.8827 0.1115 39.1, 48.4 -1.0
RIX:CC(037 x 046) m 74.0 0.88882   3 0.51316 0.012 73.0, 74.7 2.03
RIX:CC(037 x 057) m 57.33 1.7829   6 0.72786 0.0311 54.6, 59.9 0.3
RIX:CC(038 x 013) m 52.83 2.4279   6 0.99118 0.046 50.7, 56.7 -0.17
RIX:CC(039 x 020) m 37.533 2.6388   3 1.5235 0.0703 34.5, 39.3 -1.75
RIX:CC(040 x 003) m 72.48 3.2975   6 1.3462 0.0455 66.9, 76.5 1.88
RIX:CC(040 x 015) m 65.07 2.8572   3 1.6496 0.0439 62.1, 67.8 1.11
RIX:CC(041 x 012) m 47.167 4.1466   6 1.6929 0.0879 40.6, 53.2 -0.75
RIX:CC(041 x 016) m 44.05 5.7892   6 2.3634 0.1314 34.4, 49.6 -1.08
RIX:CC(042 x 017) m 66.5 2.5357   3 1.464 0.0381 64.7, 69.4 1.26
RIX:CC(042 x 019) m 30.103 25.941   6 10.59 0.8617 8.02, 67.9 -2.53
RIX:CC(043 x 033) m 65.33 6.2405   3 3.6029 0.0955 61.1, 72.5 1.13
RIX:CC(043 x 037) m 65.75 1.1879   6 0.48494 0.0181 64.4, 67.6 1.18
RIX:CC(044 x 060) m 62.4 1.9672   3 1.1358 0.0315 60.3, 64.2 0.83
RIX:CC(045 x 044) m 41.3 8.0769   6 3.2974 0.1956 32.5, 50.4 -1.36
RIX:CC(046 x 068) m 66.92 3.4522   6 1.4094 0.0516 61.7, 71.4 1.3
RIX:CC(049 x 036) m 57.5 0.72111   3 0.41633 0.0125 56.9, 58.3 0.32
RIX:CC(051 x 005) m 53.49 6.2622   7 2.3669 0.1171 40.0, 58.3 -0.1
RIX:CC(051 x 009) m 40.533 3.9913   6 1.6295 0.0985 36.9, 46.3 -1.44
RIX:CC(052 x 007) m 56.37 2.5007   3 1.4438 0.0444 53.5, 58.1 0.2
RIX:CC(052 x 014) m 58.46 2.5472   5 1.1391 0.0436 54.5, 60.8 0.42
RIX:CC(055 x 006) m 61.1 1.3077   3 0.75498 0.0214 59.6, 62.0 0.69
RIX:CC(055 x 028) m 53.27 2.7227   3 1.572 0.0511 50.2, 55.4 -0.12
RIX:CC(056 x 033) m 51.67 5.7709   3 3.3318 0.1117 46.2, 57.7 -0.29
RIX:CC(057 x 052) m 53.83 5.5211   6 2.254 0.1026 47.3, 61.2 -0.06
RIX:CC(058 x 022) m 62.07 5.6012   3 3.2338 0.0902 55.6, 65.4 0.79
RIX:CC(059 x 065) m 57.53 3.0058   6 1.2271 0.0522 54.5, 62.2 0.32
RIX:CC(060 x 006) m 56.9 3.4357   6 1.4026 0.0604 52.3, 62.5 0.26
RIX:CC(060 x 037) m 65.73 0.75056   3 0.43333 0.0114 65.0, 66.5 1.18
RIX:CC(061 x 025) m 55.23 2.916   3 1.6836 0.0528 53.5, 58.6 0.08
RIX:CC(061 x 026) m 59.72 3.4313   6 1.4008 0.0575 56.0, 63.6 0.55
RIX:CC(061 x 039) m 28.967 2.6013   6 1.062 0.0898 25.1, 32.3 -2.65
RIX:CC(062 x 046) m 54.13 3.1134   3 1.7975 0.0575 51.2, 57.4 -0.03
RIX:CC(062 x 072) m 40.033 6.3058   3 3.6407 0.1575 33.3, 45.8 -1.5
RIX:CC(063 x 001) m 43.167 3.9804   3 2.2981 0.0922 39.5, 47.4 -1.17
RIX:CC(063 x 002) m 59.23 1.3614   3 0.78599 0.023 57.7, 60.3 0.5
RIX:CC(065 x 010) m 44.483 17.529   6 7.156 0.394 10.0, 56.5 -1.03
RIX:CC(065 x 072) m 57.43 5.2539   3 3.0333 0.0915 51.4, 61.0 0.31
RIX:CC(068 x 035) m 53.63 8.3483   3 4.8199 0.1557 46.7, 62.9 -0.08
RIX:CC(068 x 043) m 61.07 7.4568   3 4.3052 0.1221 52.5, 66.1 0.69
RIX:CC(070 x 003) m 67.4 2.4556   3 1.4177 0.0364 64.7, 69.5 1.35
RIX:CC(072 x 063) m 44.733 3.3292   3 1.9221 0.0744 40.9, 46.9 -1.01
RIX:CC(072 x 075) m 61.1 4.4193   3 2.5515 0.0723 58.4, 66.2 0.69
RIX:CC(074 x 058) m 58.87 7.2037   3 4.1591 0.1224 50.6, 63.8 0.46
RIX:CC(074 x 062) m 51.8 4.7508   3 2.7429 0.0917 47.1, 56.6 -0.27
RIX:CC(075 x 021) m 40.5 2.0809   3 1.2014 0.0514 39.2, 42.9 -1.45
RIX:CC(075 x 035) m 57.4 5.693   3 3.2868 0.0992 52.9, 63.8 0.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(001 x 055) m 53.6666666667 3.2314387891 60.0216546433 47.3116786901
RIX:CC(001 x 074) m 57.6666666667 4.5699445616 66.6539768519 48.6793564815
RIX:CC(002 x 011) m 45.62 3.539863836 52.5815405349 38.6584594651
RIX:CC(002 x 021) m 59.1 3.2314387891 65.4549879766 52.7450120234
RIX:CC(003 x 051) m 44.6 3.2314387891 50.9549879766 38.2450120234
RIX:CC(003 x 062) m 64.55 3.2314387891 70.9049879766 58.1950120234
RIX:CC(004 x 011) m 58.75 3.2314387891 65.1049879766 52.3950120234
RIX:CC(004 x 012) m 52.3 3.2314387891 58.6549879766 45.9450120234
RIX:CC(005 x 001) m 52.7333333333 3.2314387891 59.0883213099 46.3783453567
RIX:CC(005 x 038) m 66.9333333333 4.5699445616 75.9206435185 57.9460231481
RIX:CC(005 x 040) m 56.7833333333 3.2314387891 63.1383213099 50.4283453567
RIX:CC(006 x 007) m 56.7 3.2314387891 63.0549879766 50.3450120234
RIX:CC(006 x 039) m 54.6 4.5699445616 63.5873101852 45.6126898148
RIX:CC(007 x 070) m 59.2333333333 4.5699445616 68.2206435185 50.2460231481
RIX:CC(008 x 009) m 51.4333333333 4.5699445616 60.4206435185 42.4460231481
RIX:CC(008 x 010) m 33.3666666667 4.5699445616 42.3539768519 24.3793564815
RIX:CC(008 x 018) m 58.1 4.5699445616 67.0873101852 49.1126898148
RIX:CC(009 x 040) m 63.6833333333 3.2314387891 70.0383213099 57.3283453567
RIX:CC(010 x 015) m 63.4 3.2314387891 69.7549879766 57.0450120234
RIX:CC(010 x 060) m 46.7 4.5699445616 55.6873101852 37.7126898148
RIX:CC(011 x 032) m 60.6 4.5699445616 69.5873101852 51.6126898148
RIX:CC(011 x 042) m 58.2333333333 3.2314387891 64.5883213099 51.8783453567
RIX:CC(012 x 032) m 61.8333333333 3.2314387891 68.1883213099 55.4783453567
RIX:CC(012 x 038) m 64.3333333333 4.5699445616 73.3206435185 55.3460231481
RIX:CC(013 x 041) m 55.3222222222 2.6384587228 60.5110481769 50.1333962675
RIX:CC(014 x 059) m 42.5333333333 3.2314387891 48.8883213099 36.1783453567
RIX:CC(015 x 018) m 28.4733333333 3.2314387891 34.8283213099 22.1183453567
RIX:CC(015 x 059) m 60.4666666667 4.5699445616 69.4539768519 51.4793564815
RIX:CC(016 x 038) m 52.6833333333 3.2314387891 59.0383213099 46.3283453567
RIX:CC(017 x 004) m 61.7666666667 3.2314387891 68.1216546433 55.4116786901
RIX:CC(017 x 041) m 60.2333333333 3.2314387891 66.5883213099 53.8783453567
RIX:CC(018 x 009) m 54.9 4.5699445616 63.8873101852 45.9126898148
RIX:CC(018 x 065) m 50.6666666667 4.5699445616 59.6539768519 41.6793564815
RIX:CC(019 x 002) m 64.4454545455 2.3865757114 69.1389242166 59.7519848743
RIX:CC(019 x 004) m 61.65 3.2314387891 68.0049879766 55.2950120234
RIX:CC(019 x 027) m 48.8666666667 4.5699445616 57.8539768519 39.8793564815
RIX:CC(021 x 023) m 55.3 4.5699445616 64.2873101852 46.3126898148
RIX:CC(022 x 024) m 53.0 4.5699445616 61.9873101852 44.0126898148
RIX:CC(022 x 044) m 62.8666666667 4.5699445616 71.8539768519 53.8793564815
RIX:CC(023 x 025) m 51.4166666667 3.2314387891 57.7716546433 45.0616786901
RIX:CC(024 x 023) m 52.25 3.2314387891 58.6049879766 45.8950120234
RIX:CC(024 x 052) m 50.9 4.5699445616 59.8873101852 41.9126898148
RIX:CC(025 x 028) m 39.15 3.2314387891 45.5049879766 32.7950120234
RIX:CC(026 x 034) m 53.4166666667 3.2314387891 59.7716546433 47.0616786901
RIX:CC(027 x 036) m 40.6666666667 4.5699445616 49.6539768519 31.6793564815
RIX:CC(027 x 045) m 56.1333333333 4.5699445616 65.1206435185 47.1460231481
RIX:CC(029 x 027) m 37.9166666667 3.2314387891 44.2716546433 31.5616786901
RIX:CC(029 x 071) m 48.3333333333 4.5699445616 57.3206435185 39.3460231481
RIX:CC(030 x 023) m 68.0333333333 4.5699445616 77.0206435185 59.0460231481
RIX:CC(030 x 061) m 46.1166666667 3.2314387891 52.4716546433 39.7616786901
RIX:CC(032 x 013) m 62.7666666667 3.2314387891 69.1216546433 56.4116786901
RIX:CC(032 x 017) m 69.9166666667 3.2314387891 76.2716546433 63.5616786901
RIX:CC(033 x 046) m 42.0833333333 3.2314387891 48.4383213099 35.7283453567
RIX:CC(035 x 020) m 68.2 4.5699445616 77.1873101852 59.2126898148
RIX:CC(035 x 071) m 44.6333333333 4.5699445616 53.6206435185 35.6460231481
RIX:CC(036 x 051) m 44.8 4.5699445616 53.7873101852 35.8126898148
RIX:CC(037 x 046) m 74.0 4.5699445616 82.9873101852 65.0126898148
RIX:CC(037 x 057) m 57.3333333333 3.2314387891 63.6883213099 50.9783453567
RIX:CC(038 x 013) m 52.8333333333 3.2314387891 59.1883213099 46.4783453567
RIX:CC(039 x 020) m 37.5333333333 4.5699445616 46.5206435185 28.5460231481
RIX:CC(040 x 003) m 72.4833333333 3.2314387891 78.8383213099 66.1283453567
RIX:CC(040 x 015) m 65.0666666667 4.5699445616 74.0539768519 56.0793564815
RIX:CC(041 x 012) m 47.1666666667 3.2314387891 53.5216546433 40.8116786901
RIX:CC(041 x 016) m 44.05 3.2314387891 50.4049879766 37.6950120234
RIX:CC(042 x 017) m 66.5 4.5699445616 75.4873101852 57.5126898148
RIX:CC(042 x 019) m 30.1033333333 3.2314387891 36.4583213099 23.7483453567
RIX:CC(043 x 033) m 65.3333333333 4.5699445616 74.3206435185 56.3460231481
RIX:CC(043 x 037) m 65.75 3.2314387891 72.1049879766 59.3950120234
RIX:CC(044 x 060) m 62.4 4.5699445616 71.3873101852 53.4126898148
RIX:CC(045 x 044) m 41.3 3.2314387891 47.6549879766 34.9450120234
RIX:CC(046 x 068) m 66.9166666667 3.2314387891 73.2716546433 60.5616786901
RIX:CC(049 x 036) m 57.5 4.5699445616 66.4873101852 48.5126898148
RIX:CC(051 x 005) m 53.4857142857 2.9917309822 59.3692898883 47.6021386832
RIX:CC(051 x 009) m 40.5333333333 3.2314387891 46.8883213099 34.1783453567
RIX:CC(052 x 007) m 56.3666666667 4.5699445616 65.3539768519 47.3793564815
RIX:CC(052 x 014) m 58.46 3.539863836 65.4215405349 51.4984594651
RIX:CC(055 x 006) m 61.1 4.5699445616 70.0873101852 52.1126898148
RIX:CC(055 x 028) m 53.2666666667 4.5699445616 62.2539768519 44.2793564815
RIX:CC(056 x 033) m 51.6666666667 4.5699445616 60.6539768519 42.6793564815
RIX:CC(057 x 052) m 53.8333333333 3.2314387891 60.1883213099 47.4783453567
RIX:CC(058 x 022) m 62.0666666667 4.5699445616 71.0539768519 53.0793564815
RIX:CC(059 x 065) m 57.5333333333 3.2314387891 63.8883213099 51.1783453567
RIX:CC(060 x 006) m 56.9 3.2314387891 63.2549879766 50.5450120234
RIX:CC(060 x 037) m 65.7333333333 4.5699445616 74.7206435185 56.7460231481
RIX:CC(061 x 025) m 55.2333333333 4.5699445616 64.2206435185 46.2460231481
RIX:CC(061 x 026) m 59.7166666667 3.2314387891 66.0716546433 53.3616786901
RIX:CC(061 x 039) m 28.9666666667 3.2314387891 35.3216546433 22.6116786901
RIX:CC(062 x 046) m 54.1333333333 4.5699445616 63.1206435185 45.1460231481
RIX:CC(062 x 072) m 40.0333333333 4.5699445616 49.0206435185 31.0460231481
RIX:CC(063 x 001) m 43.1666666667 4.5699445616 52.1539768519 34.1793564815
RIX:CC(063 x 002) m 59.2333333333 4.5699445616 68.2206435185 50.2460231481
RIX:CC(065 x 010) m 44.4833333333 3.2314387891 50.8383213099 38.1283453567
RIX:CC(065 x 072) m 57.4333333333 4.5699445616 66.4206435185 48.4460231481
RIX:CC(068 x 035) m 53.6333333333 4.5699445616 62.6206435185 44.6460231481
RIX:CC(068 x 043) m 61.0666666667 4.5699445616 70.0539768519 52.0793564815
RIX:CC(070 x 003) m 67.4 4.5699445616 76.3873101852 58.4126898148
RIX:CC(072 x 063) m 44.7333333333 4.5699445616 53.7206435185 35.7460231481
RIX:CC(072 x 075) m 61.1 4.5699445616 70.0873101852 52.1126898148
RIX:CC(074 x 058) m 58.8666666667 4.5699445616 67.8539768519 49.8793564815
RIX:CC(074 x 062) m 51.8 4.5699445616 60.7873101852 42.8126898148
RIX:CC(075 x 021) m 40.5 4.5699445616 49.4873101852 31.5126898148
RIX:CC(075 x 035) m 57.4 4.5699445616 66.3873101852 48.4126898148




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA