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Examples
Phenotype measures associated with
ontology
term
MA:0002513 'bile'
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Data set
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Lyons1
(8)
Lyons2
(8)
Lyons3
(7)
Paigen1
(11)
Paigen3
(11)
Wittenburg1
(6)
Wittenburg2
(11)
Wittenburg3
(12)
Procedure / Protocol
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histopathology
(74)
Treatment
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high-fat diet
(74)
Panel
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inbred
(11)
obesity mutants
(11)
QTL population
(52)
Sex
Clear All
both
(51)
m
(23)
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Phenotype Measure / Variable (click to view)
Panel
No. of Strains
Sex
Age
Sample Size (Avg)
Year
Lyons1:2
Lyons1
histopathology
high-fat diet
gallstones, presence (score 0=absent, 1=present) [score]
gallstone_presence
13002
QTL population
m
16-18wks
N=278
2003
Lyons1:3
Lyons1
histopathology
high-fat diet
gallstones, screening (score 0=absent, 1=present, 2=solid gallstones) [score]
gallstone_score
13003
QTL population
m
16-18wks
N=278
2003
Lyons1:4
Lyons1
histopathology
high-fat diet
number of gallstones [n]
gallstone_count
13004
QTL population
m
16-18wks
N=278
2003
Lyons1:5
Lyons1
histopathology
high-fat diet
weight of gallstones [mg]
gallstone_weight
13005
QTL population
m
16-18wks
N=278
2003
Lyons1:6
Lyons1
histopathology
high-fat diet
sandy gallstones (score 0=absence, 1-4=severity) [score]
gallstone_sandy
13006
QTL population
m
16-18wks
N=278
2003
Lyons1:7
Lyons1
histopathology
high-fat diet
solid gallstones (score 0=absence, 1-4=severity) [score]
gallstone_solid
13007
QTL population
m
16-18wks
N=278
2003
Lyons1:8
Lyons1
histopathology
high-fat diet
cholesterol monohydrate crystals, aggregates (score 0=absence, 1-4=severity) [score]
ChMC_agg
13008
QTL population
m
16-18wks
N=278
2003
Lyons1:9
Lyons1
histopathology
high-fat diet
cholesterol monohydrate crystals (score 0=absence, 1-4=severity) [score]
ChMC_ind
13009
QTL population
m
16-18wks
N=278
2003
Lyons2:4
Lyons2
histopathology
high-fat diet
gallbladder, mucin (score 0-4) [score]
gallbladder_mucin
13104
QTL population
m
16-18wks
N=277
2003
Lyons2:5
Lyons2
histopathology
high-fat diet
gallbladder bile characteristics (score 0=no crystals, 1=crystals present, 2=solid or sandy gallstones present) [score]
bile_score
13105
QTL population
m
16-18wks
N=277
2003
Lyons2:6
Lyons2
histopathology
high-fat diet
cholesterol monohydrate crystals (score 0=absent, 1-4=increasing severity) [score]
gallstone_crystals
13106
QTL population
m
16-18wks
N=277
2003
Lyons2:7
Lyons2
histopathology
high-fat diet
sandy gallstones (score 0=absence, 1-4=severity) [score]
gallstone_sandy
13107
QTL population
m
16-18wks
N=277
2003
Lyons2:8
Lyons2
histopathology
high-fat diet
solid gallstones (score 0=absence, 1-5=severity) [score]
gallstone_solid
13108
QTL population
m
16-18wks
N=277
2003
Lyons2:9
Lyons2
histopathology
high-fat diet
number of solid gallstones [n]
gallstone_count
13109
QTL population
m
16-18wks
N=277
2003
Lyons2:10
Lyons2
histopathology
high-fat diet
weight of solid gallstones [mg]
gallstone_weight
13110
QTL population
m
16-18wks
N=277
2003
Lyons2:14
Lyons2
histopathology
high-fat diet
solid gallstones, presence (score 0=absent, 1=present) [score]
Solid
13114
QTL population
m
16-18wks
N=277
2003
Lyons3:1
Lyons3
histopathology
high-fat diet
weight of gallstones [mg]
GS_wt
14601
QTL population
m
14-20wks
N=330
2004
Lyons3:2
Lyons3
histopathology
high-fat diet
number of gallstones [n]
GS_no
14602
QTL population
m
14-20wks
N=330
2004
Lyons3:3
Lyons3
histopathology
high-fat diet
gallstone score (score 0=absent, 1=crystals only, 2=sandy or solid gallstones) [score]
Score_1
14603
QTL population
m
14-20wks
N=330
2004
Lyons3:4
Lyons3
histopathology
high-fat diet
cholesterol monohydrate crystals, aggregates (score 0=absence, 1-4=severity) [score]
AggChM
14604
QTL population
m
14-20wks
N=330
2004
Lyons3:5
Lyons3
histopathology
high-fat diet
solid gallstones (score 0=absence, 4=severity) [score]
Solid
14605
QTL population
m
14-20wks
N=330
2004
Lyons3:6
Lyons3
histopathology
high-fat diet
sandy gallstones (score 0=absence, 1-4=severity) [score]
Sandy
14606
QTL population
m
14-20wks
N=330
2004
Lyons3:7
Lyons3
histopathology
high-fat diet
gallbladder mucin accumulation (score 0-3) 0=no mucin;1-3= mucin accumulation severity [score]
Mucin
14607
QTL population
m
14-20wks
N=330
2004
Paigen1:9
Paigen1
histopathology
high-fat diet
gallbladder, mucin (score: 0-4) [score]
mucin
2909
inbred
43
both
15-19wks
N=8
2000
Paigen1:10
Paigen1
histopathology
high-fat diet
gallbladder, arc (score: 0-4) [score]
arc
2910
inbred
43
both
15-19wks
N=8
2000
Paigen1:11
Paigen1
histopathology
high-fat diet
gallbladder, filaments (score: 0-4) [score]
filaments
2911
inbred
43
both
15-19wks
N=8
2000
Paigen1:12
Paigen1
histopathology
high-fat diet
gallbladder, small liquid crystals (score: 0-4) [score]
smallLC
2912
inbred
43
both
15-19wks
N=8
2000
Paigen1:13
Paigen1
histopathology
high-fat diet
gallbladder, aggregated liquid crystals (score: 0-4) [score]
agLC
2913
inbred
43
both
15-19wks
N=8
2000
Paigen1:14
Paigen1
histopathology
high-fat diet
gallbladder, fused liquid crystals (score: 0-4) [score]
fusedLC
2914
inbred
43
both
15-19wks
N=8
2000
Paigen1:15
Paigen1
histopathology
high-fat diet
gallbladder, cholesterol monohydrate crystals (score: 0-4) [score]
ChMC
2915
inbred
43
both
15-19wks
N=8
2000
Paigen1:16
Paigen1
histopathology
high-fat diet
gallbladder, number of sandy stones [n]
sandysto
2916
inbred
43
both
15-19wks
N=8
2000
Paigen1:17
Paigen1
histopathology
high-fat diet
gallbladder, number of true gallstones [n]
gs
2917
inbred
43
both
15-19wks
N=8
2000
Paigen1:18
Paigen1
histopathology
high-fat diet
gallbladder, number of sandy plus true stones [n]
nstones
2918
inbred
43
both
15-19wks
N=8
2000
Paigen1:19
Paigen1
histopathology
high-fat diet
gallbladder, presence of stones (score: 1=present, 0=absent) [score]
st_pres
2919
inbred
43
both
15-19wks
N=9
2000
Paigen3:9
Paigen3
histopathology
high-fat diet
gallbladder, mucin (score: 0-4) [score]
mucin
2809
obesity mutants
7
both
15-19wks
N=8
2000
Paigen3:10
Paigen3
histopathology
high-fat diet
gallbladder, arc (score: 0-4) [score]
arc
2810
obesity mutants
7
both
15-19wks
N=8
2000
Paigen3:11
Paigen3
histopathology
high-fat diet
gallbladder, filaments (score: 0-4) [score]
filaments
2811
obesity mutants
7
both
15-19wks
N=8
2000
Paigen3:12
Paigen3
histopathology
high-fat diet
gallbladder, small liquid crystals (score: 0-4) [score]
smallLC
2812
obesity mutants
7
both
15-19wks
N=8
2000
Paigen3:13
Paigen3
histopathology
high-fat diet
gallbladder, aggregated liquid crystals (score: 0-4) [score]
agLC
2813
obesity mutants
7
both
15-19wks
N=8
2000
Paigen3:14
Paigen3
histopathology
high-fat diet
gallbladder, fused liquid crystals (score: 0-4) [score]
fusedLC
2814
obesity mutants
7
both
15-19wks
N=8
2000
Paigen3:15
Paigen3
histopathology
high-fat diet
gallbladder, cholesterol monohydrate crystals (score: 0-4) [score]
ChMC
2815
obesity mutants
7
both
15-19wks
N=8
2000
Paigen3:16
Paigen3
histopathology
high-fat diet
gallbladder, number of sandy stones [n]
sandysto
2816
obesity mutants
7
both
15-19wks
N=8
2000
Paigen3:17
Paigen3
histopathology
high-fat diet
gallbladder, number of true gallstones [n]
gs
2817
obesity mutants
7
both
15-19wks
N=8
2000
Paigen3:18
Paigen3
histopathology
high-fat diet
gallbladder, number of sandy plus true stones [n]
nstones
2818
obesity mutants
7
both
15-19wks
N=8
2000
Paigen3:19
Paigen3
histopathology
high-fat diet
gallbladder, presence of stones (score: 1=present, 0=absent) [score]
st_pres
2819
obesity mutants
8
both
15-19wks
N=19
2000
Wittenburg1:5
Wittenburg1
histopathology
high-fat diet
gallbladder, mucin (score 0-4), log transformed [score]
gallbladder_mucin_log
12605
QTL population
both
18-20wks
N=130
2002
Wittenburg1:6
Wittenburg1
histopathology
high-fat diet
gallstones, presence (score 0=absent, 1=present) [score]
gallstone_presence
12606
QTL population
both
18-20wks
N=130
2002
Wittenburg1:7
Wittenburg1
histopathology
high-fat diet
gallstones, number [n]
gallstone_count
12607
QTL population
both
18-20wks
N=130
2002
Wittenburg1:8
Wittenburg1
histopathology
high-fat diet
weight of solid gallstones [mg]
gallstone_wt
12608
QTL population
both
18-20wks
N=130
2002
Wittenburg1:9
Wittenburg1
histopathology
high-fat diet
gallstone severity (score 0=absent, 1=crystals, 2=stones) [score]
gallstone_score
12609
QTL population
both
18-20wks
N=130
2002
Wittenburg1:10
Wittenburg1
histopathology
high-fat diet
gallstones volume
gallstone_vol
12610
QTL population
both
18-20wks
N=130
2002
Wittenburg2:6
Wittenburg2
histopathology
high-fat diet
gallbladder, mucin (score 0-5) [score]
gallbladder_mucin
13806
QTL population
both
14-16wks
N=152
2003
Wittenburg2:7
Wittenburg2
histopathology
high-fat diet
gallstones, presence (score 0=absent, 1=present) [score]
gallstone_presence
13807
QTL population
both
14-16wks
N=152
2003
Wittenburg2:8
Wittenburg2
histopathology
high-fat diet
gallstones, screening (score 0=absent, 1=present, 2=solid gallstones) [score]
gallstone_screen
13808
QTL population
both
14-16wks
N=152
2003
Wittenburg2:9
Wittenburg2
histopathology
high-fat diet
number of solid gallstones [n]
gallstone_count
13809
QTL population
both
14-16wks
N=152
2003
Wittenburg2:10
Wittenburg2
histopathology
high-fat diet
weight of solid gallstones [mg]
gallstone_wt
13810
QTL population
both
14-16wks
N=152
2003
Wittenburg2:11
Wittenburg2
histopathology
high-fat diet
weight of solid gallstones, log transformed [log(mg)]
gallstone_wt_log
13811
QTL population
both
14-16wks
N=152
2003
Wittenburg2:12
Wittenburg2
histopathology
high-fat diet
weight of solid gallstones ([mg] + 1), log10 transformed [log(mg)]
gallstone_wt_log10
13812
QTL population
both
14-16wks
N=152
2003
Wittenburg2:13
Wittenburg2
histopathology
high-fat diet
weight of solid gallstones, square root [sqrt(mg)]
gallstone_wt_sqr
13813
QTL population
both
14-16wks
N=152
2003
Wittenburg2:14
Wittenburg2
histopathology
high-fat diet
gallstones, presence of sandy stones (score 0=absent, 1=present) [score]
gallstone_sandy
13814
QTL population
both
14-16wks
N=152
2003
Wittenburg2:15
Wittenburg2
histopathology
high-fat diet
gallbladder, cholesterol monohydrate crystals (score 0-5) [score]
gallstone_crystals
13815
QTL population
both
14-16wks
N=152
2003
Wittenburg2:16
Wittenburg2
histopathology
high-fat diet
gallstone severity (score 0-3) [score]
gallstone_score
13816
QTL population
both
14-16wks
N=152
2003
Wittenburg3:5
Wittenburg3
histopathology
high-fat diet
gallstones, presence (score 0=absent, 1=present) [score]
gallstone_presence
18205
QTL population
both
14-16wks
N=162
2005
Wittenburg3:6
Wittenburg3
histopathology
high-fat diet
sandy gallstones, presence (score 0=absent, 1=present) [score]
gallstone_sandy
18206
QTL population
both
14-16wks
N=162
2005
Wittenburg3:7
Wittenburg3
histopathology
high-fat diet
solid gallstones, presence (score 0=absent, 1=present) [score]
gallstone_solid
18207
QTL population
both
14-16wks
N=162
2005
Wittenburg3:8
Wittenburg3
histopathology
high-fat diet
number of gallstones [n]
gallstone_count
18208
QTL population
both
14-16wks
N=162
2005
Wittenburg3:9
Wittenburg3
histopathology
high-fat diet
gallstone weight [mg]
gallstone_wt
18209
QTL population
both
14-16wks
N=162
2005
Wittenburg3:10
Wittenburg3
histopathology
high-fat diet
gallbladder, cholesterol monohydrate crystals (score 0=absent, 1-5=severity) [score]
gallstone_crystals
18210
QTL population
both
14-16wks
N=162
2005
Wittenburg3:11
Wittenburg3
histopathology
high-fat diet
gallbladder, mucin (score 0=absent, 1-5=severity) [score]
gallbladder_mucin
18211
QTL population
both
14-16wks
N=162
2005
Wittenburg3:12
Wittenburg3
histopathology
high-fat diet
gallstone score (score 0=absent, 1=crystals only, 2=sandy or solid gallstones) [score]
gallstone_score
18212
QTL population
both
14-16wks
N=162
2005
Wittenburg3:13
Wittenburg3
histopathology
high-fat diet
gallstone severity index (score 0-3, increasing severity) [score]
gallstone_severity
18213
QTL population
both
14-16wks
N=162
2005
Wittenburg3:18
Wittenburg3
histopathology
high-fat diet
gallstone weight if gallstones present [mg]
gallstone_wt_if_present
18218
QTL population
both
14-16wks
N=162
2005
Wittenburg3:19
Wittenburg3
histopathology
high-fat diet
gallstones presence score (0=absent, 1=present)
gallstone_present_absent
18219
QTL population
both
14-16wks
N=162
2005
Wittenburg3:20
Wittenburg3
histopathology
high-fat diet
Revised subjective summary score (0-3)
score_new
18220
QTL population
both
14-16wks
N=162
2005
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