MPD: Phenotype measures mapped to MP:0005253, abnormal eye physiology

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Phenotype measures associated with ontology term
MP:0005253 'abnormal eye physiology'

All measures in this list are mapped to the ontology descendants of MP:0005253. None are mapped to MP:0005253 directly.

MP:0001348 abnormal lacrimal gland physiology
MP:0002090 abnormal vision
MP:0004022 abnormal cone electrophysiology
MP:0005551 abnormal eye electrophysiology
MP:0011832 abnormal visual acuity
MP:0020218 abnormal tear production

This MP term has been mapped to these MPD phenotype measurements to help users find relevant data. It should be noted that MPD measurements typically have a mixture of high-end, low-end and "normal" readings.

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Brown2:5	Brown2	Morris water maze	(none)	acquistion training mean distance traveled to find hidden platform, day 3 [cm] acq_dist_d3 22505	inbred	14	both	10-18wks	N=9	2004

Brown2:6	Brown2	Morris water maze	(none)	reversal training mean distance traveled to find hidden platform, day 3 [cm] rev_dist_d3 22506	inbred	14	both	10-18wks	N=9	2004

Brown2:7	Brown2	Morris water maze	(none)	acquisition training mean velocity, day3 [cm/s] acq_vel_d3 22507	inbred	14	both	10-18wks	N=9	2004

Brown2:8	Brown2	Morris water maze	(none)	reversal training mean velocity, day 3 [cm/s] rev_vel_d3 22508	inbred	14	both	10-18wks	N=9	2004

Brown2:11	Brown2	Barnes circular maze	(none)	acquisition training mean errors [n] acq_err 22511 day1 day4	inbred	13	both	10-18wks	N=12	2004

Brown2:13	Brown2	Barnes circular maze	(none)	reversal training mean errors [n] rev_err 22513 day1 day4	inbred	13	both	10-18wks	N=12	2004

Brown2:15	Brown2	Barnes circular maze	(none)	acquisition training mean latency to escape [s] acq_lat 22515 day1 day4	inbred	13	both	10-18wks	N=12	2004

Brown2:17	Brown2	Barnes circular maze	(none)	reversal training mean latency to escape [s] rev_lat 22517 day1 day4	inbred	13	both	10-18wks	N=12	2004

Brown2:19	Brown2	Barnes circular maze	(none)	probe trial correct quadrant total entries [n] probe_corr_ent 22519	inbred	13	both	10-18wks	N=11	2004

Brown2:20	Brown2	Barnes circular maze	(none)	probe trial correct quadrant duration [s] probe_corr_dur 22520	inbred	13	both	10-18wks	N=11	2004

Brown2:21	Brown2	Barnes circular maze	(none)	probe trial percent correct quadrant [%] probe_corr_pct 22521	inbred	13	both	10-18wks	N=11	2004

Brown2:41	Brown2	Morris water maze	(none)	acquistion training mean latency to find hidden platform, day 3 [s] acq_lat_d3 22541	inbred	14	both	10-18wks	N=10	2004

Brown2:42	Brown2	Morris water maze	(none)	reversal training mean latency to find hidden platform, day 3 [s] rev_lat_d3 22542	inbred	14	both	10-18wks	N=10	2004

Brown2:43	Brown2	Morris water maze	(none)	probe trial duration, correct quadrant [s] probe_quad_corr 22543	inbred	14	both	10-18wks	N=10	2004

Brown2:44	Brown2	Morris water maze	(none)	probe trial percent time, correct quadrant [%] MWMprobe_corr_pct 22544	inbred	14	both	10-18wks	N=10	2004

Brown2:45	Brown2	Morris water maze	(none)	mean time within pool edge, across all aquistion and reversal trials [s] thigmotaxia_ave 22545	inbred	14	both	10-18wks	N=10	2004

Brown2:46	Brown2	Morris water maze	(none)	mean latency to find visible platform [s] vis_lat 22546	inbred	14	both	10-18wks	N=10	2004

Brown2:51	Brown2	visual water box	(none)	visual discrimination, detection percent correct performance, 0.17 grating threshold, day 8 [%] pct_vis_detec_d8 22551	inbred	14	both	10-18wks	N=7	2004

Brown2:52	Brown2	visual water box	(none)	visual discrimination, pattern discrimination, percent correct performance, 0.17 grating threshold, day 8 [%] pct_pat_disc_d8 22552	inbred	14	both	10-18wks	N=7	2004

Brown2:53	Brown2	visual water box	(none)	visual acuity, percent correct performance [%] pct_vis_acuit 22553 grating threshold: 0.17 (low) 0.32 0.64 (high)	inbred	14	both	10-18wks	N=7	2004

Brown2:55	Brown2	visual water box	(none)	visual discrimination, detection mean latency to reach cued platform, day 8 [s] vis_detec_ave_d8 22555	inbred	14	both	10-18wks	N=7	2004

Brown2:56	Brown2	visual water box	(none)	visual discrimination, pattern discrimination mean latency to reach cued platform, day 8 [s] pat_disc_ave_d8 22556	inbred	14	both	10-18wks	N=7	2004

Brown2:57	Brown2	visual water box	(none)	latency to reach cued platform [s] vis_acuit 22557 grating threshold: 0.17 (low) 0.32 0.64 (high) overall mean	inbred	14	both	10-18wks	N=7	2004

Chang1:1	Chang1	electroretinography	(none)	a-wave amplitude of rod photoreceptors (ERG) [µV] rod_Awave 15701	inbred	16	both	>7wks	N=15	2008

Chang1:2	Chang1	electroretinography	(none)	b-wave amplitude of rod photoreceptors (ERG) [µV] rod_Bwave 15702	inbred	17	both	>7wks	N=15	2008

Chang1:5	Chang1	electroretinography	(none)	b-wave amplitude of cone photoreceptors (ERG) [µV] cone_Bwave 15705	inbred	16	both	>7wks	N=14	2008

GMC03:32	GMC03	observation (SHIRPA)	(none)	lacrimation (0=absent, 1=present) [score] lacrimation 55232	inbred w/CC8	8	both	8-10wks	N=17	2018

GMC14:61	GMC14	virtual optomotor	(none)	threshold of spatial frequency (number of cycles that fall within one degree of visual angle), virtual drum [n/deg] spatial_freq 56361	inbred w/CC8	3	both	14-16wks	N=16	2018

JaxKOMP-EAP:308	JaxKOMP-EAP	slit lamp	(none)	lacrimation lacrimation 100635 categorical	KOMP	2013	both	14wks		2021

JaxKOMP-EAP:364	JaxKOMP-EAP	electroretinography	(none)	b-wave amplitude of cone photoreceptors [µV] cone_b_amplitude cone_b_wave_amplitude 100314 left right	KOMP	351	both	16wks	N=3	2016

JaxKOMP-EAP:366	JaxKOMP-EAP	electroretinography	(none)	b-wave implicit time of rod photoreceptors (interval from onset of stimulus to peak of the wave) [ms] cone_b_time cone_b_wave_implicit_time 100316 left right	KOMP	338	both	16wks	N=3	2016

JaxKOMP-EAP:368	JaxKOMP-EAP	electroretinography	(none)	a-wave amplitude of rod photoreceptors [µV] rod_a_amplitude rod_a_wave_amplitude 100318 left right	KOMP	356	both	16wks	N=3	2016

JaxKOMP-EAP:370	JaxKOMP-EAP	electroretinography	(none)	rod a wave implicit time rod_a_time rod_a_wave_implicit_time 100320 left right	KOMP	330	both	16wks	N=3	2016

JaxKOMP-EAP:372	JaxKOMP-EAP	electroretinography	(none)	b-wave amplitude of rod photoreceptors [µV] rod_b_amplitude rod_b_wave_amplitude 100322 left right	KOMP	357	both	16wks	N=3	2016

JaxKOMP-EAP:374	JaxKOMP-EAP	electroretinography	(none)	rod b wave implicit time rod_b_time rod_b_wave_implicit_time 100324 left right	KOMP	346	both	16wks	N=3	2016

JaxKOMP-LAP:281	JaxKOMP-LAP	slit lamp	(none)	lacrimation lacrimation 101635 categorical	KOMP	150	both	72-79wks		2021

Jaxpheno7:26	Jaxpheno7	observation (SHIRPA)	(none)	presence of lacrimal fluid (tears) around eyes during supine restraint (score 0-1) [score] lacrimation 34926	inbred	6	m	10wks	N=8	2010

Schalkwyk1:21	Schalkwyk1	Morris water maze	(none)	latency to reach visible platform, 1 min test [s] laten_visplat_MWM 34521	inbred	8	m	9-11wks	N=11	2010

Schalkwyk1:22	Schalkwyk1	Morris water maze	(none)	latency to reach hidden platform, 1 min test [s] laten_hidplat 34522 trial: 1 2 3 4 5 6 7	inbred	8	m	9-11wks	N=11	2010

Schalkwyk1:29	Schalkwyk1	Morris water maze	(none)	latency to reach reversed platform, 1 min test [s] laten_revplat 34529 trial 1 trial 2	inbred	8	m	9-11wks	N=11	2010

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