Phenotype measure:   Brown2   vis_detec_ave_d8


  STRAIN COMPARISON PLOT
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Brown2 - visual discrimination, detection mean latency to reach cued platform, day 8



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains14 strains
Mean of the strain means18.4   s 16.6   s
Median of the strain means15.0   s 18.8   s
SD of the strain means± 12.3 ± 6.90
Coefficient of variation (CV)0.667 0.416
Min–max range of strain means4.64   –   37.8   s 5.52   –   27.5   s
Mean sample size per strain6.5   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.2611 4.2611 0.0336 0.8548
strain 11 11229.5896 1020.8718 8.0564 < 0.0001
sex:strain 11 2343.6941 213.0631 1.6814 0.0836
Residuals 138 17486.7612 126.7157


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 7.85 4.02   2   2.84 0.512 5.01, 10.7 -0.86
129S1/SvImJ m 20.0 18.3   6 7.47 0.916 7.57, 55.1 0.49
A/J f 37.8 23.0   5 10.3 0.608 12.9, 58.0 1.58
A/J m 19.6 20.9   10 6.62 1.07 5.68, 59.1 0.43
AKR/J m 8.42 3.19   12 0.922 0.38 4.82, 13.0 -1.19
BALB/cByJ f 34.8 22.2   4 11.1 0.637 13.5, 57.2 1.34
BALB/cByJ m 24.5 10.3   6 4.22 0.422 10.6, 34.7 1.14
BALB/cJ f 35.8 13.4   7 5.05 0.373 20.6, 56.7 1.42
BALB/cJ m 27.5 14.8   6 6.04 0.538 13.9, 52.6 1.58
C3H/HeJ f 14.5 6.0   7 2.27 0.412 7.96, 25.2 -0.32
C3H/HeJ m 21.2 7.34   8 2.6 0.346 9.94, 32.9 0.67
C57BL/6J f 6.98 1.94   6 0.791 0.277 5.38, 10.6 -0.93
C57BL/6J m 7.99 1.52   10 0.481 0.19 5.87, 10.9 -1.25
CAST/EiJ f 9.34 1.62   5 0.726 0.174 7.36, 11.5 -0.74
CAST/EiJ m 12.5 4.11   6 1.68 0.328 8.11, 20.3 -0.6
DBA/2J f 4.64 1.15   10 0.363 0.248 3.14, 7.34 -1.12
DBA/2J m 5.52 2.26   6 0.923 0.41 3.4, 8.89 -1.61
FVB/NJ f 19.5 18.0   6 7.34 0.923 9.08, 55.5 0.09
FVB/NJ m 20.4 12.9   6 5.26 0.633 11.5, 44.4 0.55
MOLF/EiJ f 15.5 5.83   10 1.84 0.377 10.2, 29.3 -0.24
MOLF/EiJ m 22.4 12.0   5 5.39 0.537 9.53, 38.1 0.84
SJL/J f 26.1 11.5   6 4.68 0.438 14.1, 40.3 0.63
SJL/J m 18.0 9.47   9 3.16 0.527 6.57, 40.8 0.2
SM/J f 7.86 2.87   9 0.958 0.365 4.51, 14.3 -0.86
SM/J m 8.55 2.15   7 0.811 0.251 4.73, 10.8 -1.17
SPRET/EiJ m 15.9 10.9   10 3.43 0.682 3.85, 39.5 -0.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 7.855 7.9598 23.5939 0.0
129S1/SvImJ m 19.9733 4.5956 29.0602 10.8865
A/J f 37.84 5.0342 47.7941 27.8859
A/J m 19.569 3.5597 26.6076 12.5304
BALB/cByJ f 34.825 5.6284 45.9541 23.6959
BALB/cByJ m 24.5167 4.5956 33.6035 15.4298
BALB/cJ f 35.8286 4.2547 44.2414 27.4158
BALB/cJ m 27.5 4.5956 36.5868 18.4132
C3H/HeJ f 14.55 4.2547 22.9628 6.1372
C3H/HeJ m 21.2425 3.9799 29.1119 13.3731
C57BL/6J f 6.98 4.5956 16.0668 0.0
C57BL/6J m 7.991 3.5597 15.0296 0.9524
CAST/EiJ f 9.344 5.0342 19.2981 0.0
CAST/EiJ m 12.535 4.5956 21.6218 3.4482
DBA/2J f 4.639 3.5597 11.6776 0.0
DBA/2J m 5.52 4.5956 14.6068 0.0
FVB/NJ f 19.4783 4.5956 28.5652 10.3915
FVB/NJ m 20.3667 4.5956 29.4535 11.2798
MOLF/EiJ f 15.46 3.5597 22.4986 8.4214
MOLF/EiJ m 22.426 5.0342 32.3801 12.4719
SJL/J f 26.15 4.5956 35.2368 17.0632
SJL/J m 17.9633 3.7523 25.3827 10.544
SM/J f 7.8633 3.7523 15.2827 0.444
SM/J m 8.5514 4.2547 16.9642 0.1386


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 13.9142 4.5956 23.001 4.8273
A/J both 28.7045 3.0828 34.8001 22.6089
BALB/cByJ both 29.6708 3.6331 36.8546 22.4871
BALB/cJ both 31.6643 3.1314 37.8559 25.4726
C3H/HeJ both 17.8962 2.913 23.6561 12.1364
C57BL/6J both 7.4855 2.9065 13.2325 1.7385
CAST/EiJ both 10.9395 3.4082 17.6785 4.2005
DBA/2J both 5.0795 2.9065 10.8265 0.0
FVB/NJ both 19.9225 3.2496 26.3479 13.4971
MOLF/EiJ both 18.943 3.0828 25.0386 12.8474
SJL/J both 22.0567 2.9664 27.9222 16.1911
SM/J both 8.2074 2.8364 13.8159 2.5989




  GWAS USING LINEAR MIXED MODELS