Project measure / variable:   Brown2   vis_lat

ID, description, units MPD:22546   vis_lat   mean latency to find visible platform   [s]  
Data set, strains Brown2   inbred   14 strains     sex: both     age: 10-18wks
Procedure Morris water maze
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  STRAIN COMPARISON PLOT
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Brown2 - mean latency to find visible platform



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested13 strains14 strains
Mean of the strain means120   s 114   s
Median of the strain means110   s 96.0   s
SD of the strain means± 50.3 ± 57.2
Coefficient of variation (CV)0.421 0.500
Min–max range of strain means37.2   –   211   s 41.3   –   236   s
Mean sample size per strain10.4   mice 9.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 13315.2468 13315.2468 4.6993 0.0312
strain 12 511667.2139 42638.9345 15.0485 < 0.0001
sex:strain 12 27454.1481 2287.8457 0.8074 0.6427
Residuals 238 674357.4906 2833.4348


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 77.9 50.2   12 14.5 0.644 18.9, 198.0 -0.83
129S1/SvImJ m 87.8 62.1   12 17.9 0.707 18.0, 191.0 -0.47
A/J f 177.0 77.4   6 31.6 0.438 47.0, 240.0 1.14
A/J m 130.0 66.8   18 15.8 0.513 26.6, 240.0 0.27
AKR/J f 71.5 33.2   12 9.59 0.465 32.9, 147.0 -0.96
AKR/J m 74.4 24.6   12 7.09 0.33 46.3, 130.0 -0.7
BALB/cByJ f 110.0 68.1   15 17.6 0.621 28.6, 240.0 -0.19
BALB/cByJ m 63.7 30.3   6 12.4 0.476 29.5, 107.0 -0.89
BALB/cJ f 135.0 67.1   14 17.9 0.497 54.5, 240.0 0.31
BALB/cJ m 104.0 75.0   10 23.7 0.724 31.9, 240.0 -0.18
C3H/HeJ f 163.0 43.7   10 13.8 0.267 100.0, 223.0 0.86
C3H/HeJ m 158.0 35.0   9 11.7 0.222 93.3, 209.0 0.76
C57BL/6J f 37.2 14.1   12 4.08 0.381 18.6, 58.2 -1.64
C57BL/6J m 41.3 16.7   12 4.83 0.405 17.9, 65.1 -1.28
CAST/EiJ f 95.7 81.4   10 25.7 0.85 25.8, 240.0 -0.47
CAST/EiJ m 87.9 70.6   10 22.3 0.804 23.9, 240.0 -0.46
DBA/2J f 69.2 47.8   6 19.5 0.691 31.3, 161.0 -1.0
DBA/2J m 47.3 17.1   6 6.97 0.361 27.5, 79.1 -1.17
FVB/NJ f 150.0 47.9   6 19.6 0.32 107.0, 240.0 0.6
FVB/NJ m 162.0 65.3   6 26.7 0.404 72.3, 240.0 0.83
MOLF/EiJ f 211.0 43.3   11 13.1 0.206 118.0, 240.0 1.82
MOLF/EiJ m 171.0 44.5   4 22.3 0.26 117.0, 226.0 0.99
SJL/J f 156.0 62.8   12 18.1 0.403 55.8, 240.0 0.72
SJL/J m 167.0 42.7   12 12.3 0.256 92.2, 222.0 0.92
SM/J f 101.0 39.2   9 13.1 0.39 24.5, 169.0 -0.37
SM/J m 71.3 40.3   12 11.6 0.566 24.3, 135.0 -0.75
SPRET/EiJ m 236.0 12.7   11 3.82 0.0536 198.0, 240.0 2.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 77.8833 15.3662 108.1544 47.6122
129S1/SvImJ m 87.8333 15.3662 118.1044 57.5622
A/J f 176.6667 21.7311 219.4765 133.8569
A/J m 130.2278 12.5464 154.944 105.5115
AKR/J f 71.5083 15.3662 101.7794 41.2372
AKR/J m 74.4417 15.3662 104.7128 44.1706
BALB/cByJ f 109.6 13.7439 136.6753 82.5247
BALB/cByJ m 63.7 21.7311 106.5098 20.8902
BALB/cJ f 135.1643 14.2263 163.1899 107.1387
BALB/cJ m 103.6 16.8328 136.7603 70.4397
C3H/HeJ f 163.3 16.8328 196.4603 130.1397
C3H/HeJ m 157.5889 17.7433 192.5429 122.6348
C57BL/6J f 37.175 15.3662 67.4461 6.9039
C57BL/6J m 41.3333 15.3662 71.6044 11.0622
CAST/EiJ f 95.7 16.8328 128.8603 62.5397
CAST/EiJ m 87.91 16.8328 121.0703 54.7497
DBA/2J f 69.2 21.7311 112.0098 26.3902
DBA/2J m 47.2667 21.7311 90.0765 4.4569
FVB/NJ f 150.0 21.7311 192.8098 107.1902
FVB/NJ m 161.8833 21.7311 204.6931 119.0735
MOLF/EiJ f 210.8182 16.0495 242.4353 179.2011
MOLF/EiJ m 171.25 26.615 223.6811 118.8189
SJL/J f 156.0 15.3662 186.2711 125.7289
SJL/J m 166.8333 15.3662 197.1044 136.5622
SM/J f 100.5778 17.7433 135.5318 65.6237
SM/J m 71.25 15.3662 101.5211 40.9789


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 82.8583 10.8655 104.2632 61.4534
A/J both 153.4472 12.5464 178.1635 128.731
AKR/J both 72.975 10.8655 94.3799 51.5701
BALB/cByJ both 86.65 12.8563 111.9766 61.3234
BALB/cJ both 119.3821 11.0197 141.0907 97.6736
C3H/HeJ both 160.4444 12.2288 184.5349 136.354
C57BL/6J both 39.2542 10.8655 60.6591 17.8493
CAST/EiJ both 91.805 11.9026 115.2529 68.3571
DBA/2J both 58.2333 15.3662 88.5044 27.9622
FVB/NJ both 155.9417 15.3662 186.2128 125.6706
MOLF/EiJ both 191.0341 15.5398 221.6472 160.4209
SJL/J both 161.4167 10.8655 182.8216 140.0118
SM/J both 85.9139 11.7361 109.0338 62.794




  GWAS USING LINEAR MIXED MODELS