Phenotype measure:   Brown2   pat_disc_ave_d8

ID, description, units MPD:22556   pat_disc_ave_d8   visual discrimination, pattern discrimination mean latency to reach cued platform, day 8   [s]
Data set, strains Brown2   inbred   14 strains     sex: both     age: 10-18wks
Procedure visual water box
Ontology mappings

  STRAIN COMPARISON PLOT
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Brown2 - visual discrimination, pattern discrimination mean latency to reach cued platform, day 8



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains14 strains
Mean of the strain means18.4   s 17.2   s
Median of the strain means15.1   s 17.4   s
SD of the strain means± 11.7 ± 7.51
Coefficient of variation (CV)0.638 0.437
Min–max range of strain means5.52   –   41.7   s 8.20   –   32.5   s
Mean sample size per strain6.4   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.5214 0.5214 0.0051 0.9433
strain 11 11406.7613 1036.9783 10.1002 < 0.0001
sex:strain 11 1983.453 180.3139 1.7563 0.0676
Residuals 137 14065.7201 102.6695


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 9.38 3.56   2   2.52 0.379 6.87, 11.9 -0.77
129S1/SvImJ m 22.1 18.9   6 7.7 0.852 9.94, 60.0 0.66
A/J f 31.1 19.8   5 8.85 0.636 13.1, 60.0 1.09
A/J m 17.3 16.8   10 5.31 0.971 4.99, 60.0 0.02
AKR/J m 8.2 1.95   13 0.54 0.238 5.62, 13.1 -1.19
BALB/cByJ f 37.0 20.4   4 10.2 0.551 19.3, 56.3 1.59
BALB/cByJ m 25.2 10.2   6 4.18 0.407 14.3, 42.8 1.07
BALB/cJ f 41.7 9.1   7 3.44 0.218 29.7, 57.0 1.99
BALB/cJ m 32.5 15.4   6 6.27 0.473 16.9, 59.7 2.04
C3H/HeJ f 15.8 3.83   7 1.45 0.242 11.3, 21.9 -0.22
C3H/HeJ m 21.1 11.4   8 4.04 0.542 11.7, 47.2 0.52
C57BL/6J f 8.7 2.38   6 0.971 0.273 5.8, 12.4 -0.82
C57BL/6J m 9.18 3.58   10 1.13 0.39 4.28, 14.9 -1.06
CAST/EiJ f 14.0 5.83   4 2.91 0.416 6.75, 19.9 -0.37
CAST/EiJ m 13.0 3.59   6 1.46 0.277 8.19, 17.9 -0.56
DBA/2J f 5.52 0.875   10 0.277 0.159 4.17, 7.53 -1.1
DBA/2J m 9.44 3.48   6 1.42 0.369 6.78, 15.6 -1.03
FVB/NJ f 14.3 11.0   6 4.5 0.773 6.76, 36.0 -0.35
FVB/NJ m 11.3 4.48   6 1.83 0.396 6.2, 17.5 -0.78
MOLF/EiJ f 16.2 9.66   10 3.05 0.595 9.47, 42.3 -0.18
MOLF/EiJ m 25.9 12.5   5 5.58 0.482 13.2, 41.0 1.16
SJL/J f 16.6 5.8   6 2.37 0.35 10.6, 27.1 -0.15
SJL/J m 18.2 10.6   9 3.53 0.58 10.6, 44.1 0.14
SM/J f 10.1 2.98   9 0.994 0.294 6.86, 15.2 -0.71
SM/J m 9.44 2.49   7 0.94 0.264 5.46, 13.5 -1.03
SPRET/EiJ m 17.5 15.0   10 4.75 0.857 6.03, 46.3 0.04


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 9.385 7.1648 23.553 0.0
129S1/SvImJ m 22.14 4.1366 30.3199 13.9601
A/J f 31.14 4.5314 40.1006 22.1794
A/J m 17.311 3.2042 23.6471 10.9749
BALB/cByJ f 36.95 5.0663 46.9683 26.9317
BALB/cByJ m 25.1667 4.1366 33.3465 16.9868
BALB/cJ f 41.6857 3.8298 49.2588 34.1126
BALB/cJ m 32.5 4.1366 40.6799 24.3201
C3H/HeJ f 15.8143 3.8298 23.3874 8.2412
C3H/HeJ m 21.0625 3.5824 28.1465 13.9785
C57BL/6J f 8.7 4.1366 16.8799 0.5201
C57BL/6J m 9.184 3.2042 15.5201 2.8479
CAST/EiJ f 14.0125 5.0663 24.0308 3.9942
CAST/EiJ m 12.965 4.1366 21.1449 4.7851
DBA/2J f 5.518 3.2042 11.8541 0.0
DBA/2J m 9.4383 4.1366 17.6182 1.2585
FVB/NJ f 14.2533 4.1366 22.4332 6.0735
FVB/NJ m 11.2933 4.1366 19.4732 3.1135
MOLF/EiJ f 16.237 3.2042 22.5731 9.9009
MOLF/EiJ m 25.88 4.5314 34.8406 16.9194
SJL/J f 16.5667 4.1366 24.7465 8.3868
SJL/J m 18.2444 3.3775 24.9233 11.5656
SM/J f 10.1344 3.3775 16.8133 3.4556
SM/J m 9.4357 3.8298 17.0088 1.8626


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 15.7625 4.1366 23.9424 7.5826
A/J both 24.2255 2.7749 29.7127 18.7383
BALB/cByJ both 31.0583 3.2703 37.5251 24.5916
BALB/cJ both 37.0929 2.8186 42.6665 31.5192
C3H/HeJ both 18.4384 2.6221 23.6233 13.2535
C57BL/6J both 8.942 2.6162 14.1154 3.7686
CAST/EiJ both 13.4888 3.2703 19.9555 7.022
DBA/2J both 7.4782 2.6162 12.6516 2.3048
FVB/NJ both 12.7733 2.925 18.5574 6.9893
MOLF/EiJ both 21.0585 2.7749 26.5457 15.5713
SJL/J both 17.4056 2.6702 22.6856 12.1255
SM/J both 9.7851 2.5532 14.8338 4.7364




  GWAS USING LINEAR MIXED MODELS