Project measure / variable:   Brown2   probe_corr_dur

ID, description, units MPD:22520   probe_corr_dur   probe trial correct quadrant duration   [s]  
Data set, strains Brown2   inbred   13 strains     sex: both     age: 10-18wks
Procedure Barnes circular maze
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  STRAIN COMPARISON PLOT
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Brown2 - probe trial correct quadrant duration



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested13 strains13 strains
Mean of the strain means80.1   s 84.7   s
Median of the strain means79.7   s 88.0   s
SD of the strain means± 17.4 ± 12.5
Coefficient of variation (CV)0.217 0.148
Min–max range of strain means49.3   –   113   s 58.7   –   101   s
Mean sample size per strain11.0   mice 10.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 17.7028 17.7028 0.009 0.9247
strain 12 32738.4318 2728.2027 1.3802 0.1753
sex:strain 12 23795.8625 1982.9885 1.0032 0.4463
Residuals 259 511970.0967 1976.7185


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 81.9 28.5   12 8.22 0.348 21.5, 124.0 0.11
129S1/SvImJ m 101.0 67.6   12 19.5 0.668 3.07, 235.0 1.3
A/J f 49.3 61.9   12 17.9 1.26 -1.77
A/J m 65.5 61.0   18 14.4 0.931 -1.53
AKR/J f 89.2 33.1   12 9.55 0.371 43.8, 160.0 0.53
AKR/J m 74.4 20.8   12 5.99 0.279 49.7, 124.0 -0.82
BALB/cByJ f 91.6 59.9   21 13.1 0.654 0.66
BALB/cByJ m 93.0 44.7   12 12.9 0.48 21.7, 207.0 0.66
BALB/cJ f 72.0 32.4   14 8.66 0.45 11.6, 142.0 -0.47
BALB/cJ m 88.0 39.4   10 12.5 0.448 17.5, 171.0 0.26
C3H/HeJ f 78.1 35.1   10 11.1 0.45 9.57, 137.0 -0.11
C3H/HeJ m 84.4 46.4   10 14.7 0.55 -0.02
C57BL/6J f 113.0 77.9   11 23.5 0.691 17.1, 263.0 1.9
C57BL/6J m 92.8 58.6   12 16.9 0.631 5.28, 217.0 0.65
CAST/EiJ f 52.2 43.3   3 25.0 0.829 6.98, 93.3 -1.61
CAST/EiJ m 101.0 5.83   5 2.61 0.0575 92.7, 108.0 1.3
DBA/2J f 90.6 22.2   12 6.41 0.245 53.9, 131.0 0.61
DBA/2J m 88.3 21.1   11 6.36 0.239 49.6, 115.0 0.29
FVB/NJ f 75.7 12.8   11 3.86 0.169 55.9, 97.9 -0.25
FVB/NJ m 89.6 17.7   12 5.11 0.198 58.1, 112.0 0.39
MOLF/EiJ f 97.3 52.4   12 15.1 0.539 13.9, 180.0 0.99
MOLF/EiJ m 58.7 41.1   11 12.4 0.7 -2.07
SJL/J f 79.7 23.4   12 6.75 0.294 20.1, 118.0 -0.02
SJL/J m 80.0 22.9   9 7.64 0.286 50.1, 125.0 -0.37
SM/J f 70.4 36.9   3 21.3 0.525 49.0, 113.0 -0.56
SM/J m 84.2 16.1   6 6.58 0.191 68.0, 112.0 -0.04


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 81.8917 12.8346 107.1651 56.6182
129S1/SvImJ m 101.2058 12.8346 126.4793 75.9324
A/J f 49.325 12.8346 74.5984 24.0516
A/J m 65.5389 10.4794 86.1746 44.9032
AKR/J f 89.2 12.8346 114.4734 63.9266
AKR/J m 74.4167 12.8346 99.6901 49.1432
BALB/cByJ f 91.6333 9.702 110.7382 72.5284
BALB/cByJ m 92.9583 12.8346 118.2318 67.6849
BALB/cJ f 71.9929 11.8825 95.3915 48.5942
BALB/cJ m 87.96 14.0596 115.6456 60.2744
C3H/HeJ f 78.097 14.0596 105.7826 50.4114
C3H/HeJ m 84.43 14.0596 112.1156 56.7444
C57BL/6J f 112.7364 13.4053 139.1336 86.3391
C57BL/6J m 92.7817 12.8346 118.0551 67.5082
CAST/EiJ f 52.2267 25.6692 102.7735 1.6798
CAST/EiJ m 101.44 19.8833 140.5934 62.2866
DBA/2J f 90.5583 12.8346 115.8318 65.2849
DBA/2J m 88.2545 13.4053 114.6518 61.8573
FVB/NJ f 75.6545 13.4053 102.0518 49.2573
FVB/NJ m 89.6 12.8346 114.8734 64.3266
MOLF/EiJ f 97.3 12.8346 122.5734 72.0266
MOLF/EiJ m 58.7182 13.4053 85.1154 32.321
SJL/J f 79.6833 12.8346 104.9568 54.4099
SJL/J m 80.0111 14.8201 109.1943 50.8279
SM/J f 70.3667 25.6692 120.9135 19.8198
SM/J m 84.2167 18.1508 119.9587 48.4747


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 91.5487 9.0754 109.4198 73.6777
A/J both 57.4319 8.2847 73.7459 41.118
AKR/J both 81.8083 9.0754 99.6793 63.9373
BALB/cByJ both 92.2958 8.0445 108.1368 76.4549
BALB/cJ both 79.9764 9.2042 98.1009 61.8519
C3H/HeJ both 81.2635 9.9416 100.8402 61.6868
C57BL/6J both 102.759 9.2794 121.0317 84.4864
CAST/EiJ both 76.8333 16.2346 108.802 44.8647
DBA/2J both 89.4064 9.2794 107.6791 71.1338
FVB/NJ both 82.6273 9.2794 100.8999 64.3546
MOLF/EiJ both 78.0091 9.2794 96.2817 59.7364
SJL/J both 79.8472 9.8026 99.1501 60.5443
SM/J both 77.2917 15.7191 108.2452 46.3382




  GWAS USING LINEAR MIXED MODELS